Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0323551 Rosa chinensis HOM05D000001 ORTHO05D010829 6.0e-60 234.2 137 100.0
RcHm_v2.0_Chr1g0323771 Rosa chinensis HOM05D000001 ORTHO05D000003 4.8e-25 118.2 108 80.6
RcHm_v2.0_Chr1g0323691 Rosa chinensis HOM05D000001 ORTHO05D010829 6.5e-22 107.8 108 78.7
FAN28G0150 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.8e-19 97.4 104 76.0
Cc01_g01000 Coffea canephora HOM05D000001 ORTHO05D000003 1.2e-15 87.0 107 68.2
CANSAT25G3527 Cannabis sativa HOM05D000001 ORTHO05D000003 3.5e-15 85.5 107 66.4
RcHm_v2.0_Chr1g0323521 Rosa chinensis HOM05D000001 ORTHO05D010829 1.7e-14 83.2 41 92.7
EL10Ac9g21415 Beta vulgaris HOM05D003332 ORTHO05D003800 1.1e-13 80.5 107 64.5
Prupe.8G162400 Prunus persica HOM05D000001 ORTHO05D000003 1.5e-13 80.1 107 62.6
FvH4_1g26660 Fragaria vesca HOM05D000001 ORTHO05D000003 1.9e-13 79.7 104 68.3
QL11p049153 Quercus lobata HOM05D000001 ORTHO05D000003 3.2e-13 79.0 106 67.0
RcHm_v2.0_Chr1g0323621 Rosa chinensis HOM05D000001 ORTHO05D000003 4.2e-13 78.6 101 66.3
QL11p048573 Quercus lobata HOM05D000001 ORTHO05D000003 5.5e-13 78.2 106 66.0
Cfa005212 Carpinus fangiana HOM05D000001 ORTHO05D000003 7.2e-13 77.8 106 63.2
MD10G1120900 Malus domestica HOM05D000001 ORTHO05D000003 9.4e-13 77.4 104 63.5
Haze_02176 Corylus avellana HOM05D000001 ORTHO05D000003 6.1e-12 74.7 106 61.3
Haze_02183 Corylus avellana HOM05D000001 ORTHO05D000003 6.1e-12 74.7 106 61.3
HanXRQChr17g0553841 Helianthus annuus HOM05D000001 ORTHO05D000003 1.4e-11 73.6 107 60.7
Ah.01g008950 Amaranthus hybridus HOM05D003332 ORTHO05D003800 2.3e-11 72.8 104 60.6
Atru.chr5.3269 Acer truncatum HOM05D000001 ORTHO05D010829 3.0e-11 72.4 107 62.6
AUR62013066 Chenopodium quinoa HOM05D000001 ORTHO05D000003 6.8e-11 71.2 104 61.5
Lsat_1_v5_gn_8_124920 Lactuca sativa HOM05D000001 ORTHO05D000003 6.8e-11 71.2 107 56.1
Lj3g0015811 Lotus japonicus HOM05D000001 ORTHO05D000003 1.5e-10 70.1 107 62.6
Nn5g28072 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.5e-10 70.1 107 60.7
TPR.G19910 Trifolium pratense HOM05D000001 ORTHO05D000003 3.4e-10 68.9 107 61.7
Psat7g174760 Pisum sativum HOM05D000001 ORTHO05D000003 9.8e-10 67.4 107 61.7
Actinidia20495 Actinidia chinensis HOM05D003332 ORTHO05D003800 1.3e-09 67.0 104 61.5
MD05G1117900 Malus domestica HOM05D000001 ORTHO05D000003 2.2e-09 66.2 85 68.2
CAN.G241.19 Capsicum annuum HOM05D000001 ORTHO05D010829 2.8e-09 65.9 107 57.9
Lalb_Chr03g0025021 Lupinus albus HOM05D000001 ORTHO05D000003 2.8e-09 65.9 107 59.8
CiPaw.05G079000 Carya illinoinensis HOM05D000001 ORTHO05D000003 3.7e-09 65.5 107 58.9
Rhsim11G0190400 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.7e-09 65.5 103 61.2
AUR62010074 Chenopodium quinoa HOM05D000001 ORTHO05D000003 4.8e-09 65.1 104 59.6
ClCG09G015460 Citrullus lanatus HOM05D000001 ORTHO05D000003 4.8e-09 65.1 107 57.9
Medtr4g073930 Medicago truncatula HOM05D000001 ORTHO05D000003 6.3e-09 64.7 107 61.7
A04p15890 Brassica napus HOM05D000001 ORTHO05D000003 1.4e-08 63.5 104 61.5
C08p41840 Brassica napus HOM05D000001 ORTHO05D000003 1.4e-08 63.5 107 59.8
BraA04t17222Z Brassica rapa HOM05D000001 ORTHO05D000003 1.4e-08 63.5 104 61.5
CARHR111930 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.4e-08 63.5 107 58.9
BolC8t51747H Brassica oleracea HOM05D000180 ORTHO05D000003 2.4e-08 62.8 107 59.8
Nitab4.5_0001423g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.1e-08 62.0 107 58.9
THA.LOC104804096 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 4.1e-08 62.0 107 59.8
BcaB06g27767 Brassica carinata HOM05D000001 ORTHO05D000003 5.4e-08 61.6 107 59.8
Thhalv10000418m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 7.0e-08 61.2 107 60.7
MBI05_g31852_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 7.0e-08 61.2 104 52.9
Sp4g00230 Schrenkiella parvula HOM05D000001 ORTHO05D000003 9.1e-08 60.8 107 59.8
Eucgr.G01766 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.6e-07 60.1 105 58.1
RcHm_v2.0_Chr1g0323751 Rosa chinensis HOM05D000001 ORTHO05D348260 1.6e-07 60.1 31 83.9
A09p58540 Brassica napus HOM05D000001 ORTHO05D000003 2.0e-07 59.7 107 58.9
C04p50340 Brassica napus HOM05D000001 ORTHO05D000003 2.0e-07 59.7 104 60.6
BolC4t26632H Brassica oleracea HOM05D000001 ORTHO05D000003 2.0e-07 59.7 104 60.6
BraA09t41240Z Brassica rapa HOM05D000180 ORTHO05D000003 2.0e-07 59.7 107 58.9
CSS0010402 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 3.5e-07 58.9 104 58.7
BcaC07g41176 Brassica carinata HOM05D000001 ORTHO05D000003 4.5e-07 58.5 107 57.9
Nitab4.5_0001903g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 5.9e-07 58.2 107 57.0
Carub.0004s0012 Capsella rubella HOM05D000001 ORTHO05D000003 7.7e-07 57.8 107 57.9
Dinv39488 Davidia involucrata HOM05D000001 ORTHO05D000003 7.7e-07 57.8 104 58.7
Aa31LG7G15590 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.3e-06 57.0 107 57.0
AT2G21090 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 1.3e-06 57.0 107 57.0
MSTRG.16891 Avicennia marina HOM05D000001 ORTHO05D000003 1.7e-06 56.6 104 58.7
CAN.G134.238 Capsicum annuum HOM05D000001 ORTHO05D000003 2.3e-06 56.2 107 55.1
GSVIVG01024061001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.9e-06 55.8 104 58.7
AL4G10180 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 5.0e-06 55.1 107 56.1
Actinidia33593 Actinidia chinensis HOM05D000001 ORTHO05D000003 8.6e-06 54.3 42 57.1
PGR042G0492 Punica granatum HOM05D000001 ORTHO05D000003 8.6e-06 54.3 103 56.3


User provided reference genes

Program Settings