Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0323031 Rosa chinensis HOM05D011824 ORTHO05D017030 3.8e-82 308.1 159 100.0
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 5.8e-30 134.8 149 53.0
FvH4_5g08844 Fragaria vesca HOM05D000003 ORTHO05D000004 5.4e-28 128.3 153 49.0
FAN26G2950 Fragaria x ananassa HOM05D011824 ORTHO05D017030 3.9e-26 122.1 155 44.5
RcHm_v2.0_Chr7g0223051 Rosa chinensis HOM05D000003 ORTHO05D009449 8.6e-26 120.9 153 46.4
FvH4_2g06831 Fragaria vesca HOM05D011824 ORTHO05D035622 5.2e-23 111.7 143 49.0
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 5.8e-22 108.2 152 43.4
RcHm_v2.0_Chr1g0347191 Rosa chinensis HOM05D000003 ORTHO05D000004 3.8e-21 105.5 152 39.5
RcHm_v2.0_Chr1g0327811 Rosa chinensis HOM05D032655 ORTHO05D007254 2.4e-20 102.8 156 36.5
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 1.7e-18 96.7 107 48.6
RcHm_v2.0_Chr6g0263011 Rosa chinensis HOM05D011824 ORTHO05D017030 1.1e-17 94.0 144 37.5
FAN25G0009 Fragaria x ananassa HOM05D011824 ORTHO05D017030 3.1e-15 85.9 117 46.2
FAN25G3042 Fragaria x ananassa HOM05D011824 ORTHO05D017030 3.1e-15 85.9 117 46.2
FvH4_2g01641 Fragaria vesca HOM05D011824 ORTHO05D017030 6.9e-15 84.7 120 45.0
FvH4_5g26254 Fragaria vesca HOM05D011824 ORTHO05D009449 2.0e-14 83.2 86 53.5
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.9e-14 80.9 149 37.6
FvH4_3g10392 Fragaria vesca HOM05D008133 ORTHO05D009449 1.7e-13 80.1 161 37.9
FvH4_6g11620 Fragaria vesca HOM05D008133 ORTHO05D009449 1.7e-13 80.1 176 34.1
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.7e-13 80.1 146 37.7
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.4e-12 76.3 146 36.3
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 4.2e-12 75.5 140 37.1
FvH4_5g31282 Fragaria vesca HOM05D000003 ORTHO05D000004 1.2e-11 73.9 92 39.1
PSO017G5116 Papaver somniferum HOM05D000003 ORTHO05D000004 1.6e-11 73.6 144 36.8
FvH4_1g10354 Fragaria vesca HOM05D000003 ORTHO05D022646 2.1e-11 73.2 152 36.2
PSO339G5018 Papaver somniferum HOM05D000003 ORTHO05D000004 2.7e-11 72.8 144 36.8
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.7e-11 72.8 149 36.2
PSO170G6319 Papaver somniferum HOM05D003407 ORTHO05D001026 3.5e-11 72.4 133 34.6
RcHm_v2.0_Chr3g0490691 Rosa chinensis HOM05D000003 ORTHO05D035622 4.6e-11 72.0 72 56.9
PSO339G3052 Papaver somniferum HOM05D000003 ORTHO05D000004 7.9e-11 71.2 147 36.1
COL.COLO4_30555 Corchorus olitorius HOM05D000003 ORTHO05D000167 1.0e-10 70.9 139 36.0
RcHm_v2.0_Chr1g0332521 Rosa chinensis HOM05D011824 ORTHO05D017030 1.7e-10 70.1 87 47.1
COL.COLO4_35856 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.3e-10 69.7 125 32.8
LjContig00357g0004525 Lotus japonicus HOM05D000003 ORTHO05D000022 2.3e-10 69.7 136 34.6
PSO210G5459 Papaver somniferum HOM05D000003 ORTHO05D000004 3.9e-10 68.9 147 36.1
COL.COLO4_22912 Corchorus olitorius HOM05D000003 ORTHO05D000126 5.1e-10 68.6 149 29.5
FvH4_3g32111 Fragaria vesca HOM05D000003 ORTHO05D000004 5.1e-10 68.6 145 29.7
TWI60G0205 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 6.6e-10 68.2 100 41.0
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-09 67.0 142 30.3
PSO017G2944 Papaver somniferum HOM05D000003 ORTHO05D000004 1.9e-09 66.6 149 33.6
PSO675G4934 Papaver somniferum HOM05D003407 ORTHO05D001026 2.5e-09 66.2 134 35.1
COL.COLO4_37225 Corchorus olitorius HOM05D000003 ORTHO05D000126 3.3e-09 65.9 120 33.3
PSO210G3048 Papaver somniferum HOM05D000003 ORTHO05D000004 3.3e-09 65.9 147 34.0
PSO170G3074 Papaver somniferum HOM05D000003 ORTHO05D001026 5.6e-09 65.1 136 30.9
PSO210G1914 Papaver somniferum HOM05D003407 ORTHO05D001026 5.6e-09 65.1 132 29.5
COL.COLO4_16660 Corchorus olitorius HOM05D008133 ORTHO05D007254 7.3e-09 64.7 119 34.5
COL.COLO4_36557 Corchorus olitorius HOM05D000003 ORTHO05D000126 7.3e-09 64.7 138 36.2
CANSAT11G0139 Cannabis sativa HOM05D000003 ORTHO05D000167 9.6e-09 64.3 143 32.9
PSO170G2843 Papaver somniferum HOM05D000003 ORTHO05D001026 9.6e-09 64.3 139 33.1
RcHm_v2.0_Chr1g0326401 Rosa chinensis HOM05D000003 ORTHO05D000004 9.6e-09 64.3 57 56.1
AUR62014610 Chenopodium quinoa HOM05D000003 ORTHO05D011948 1.3e-08 63.9 137 32.8
FvH4_1g29601 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-08 63.9 148 31.8
PSO675G7015 Papaver somniferum HOM05D000003 ORTHO05D001026 1.3e-08 63.9 139 32.4
Atru.chr10.544 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-08 63.5 140 32.9
FvH4_2g05763 Fragaria vesca HOM05D000003 ORTHO05D000004 1.6e-08 63.5 151 31.8
FvH4_6g16031 Fragaria vesca HOM05D000003 ORTHO05D009449 1.6e-08 63.5 146 34.2
QL05p051227 Quercus lobata HOM05D000003 ORTHO05D000004 2.1e-08 63.2 158 29.1
RcHm_v2.0_Chr1g0367181 Rosa chinensis HOM05D017965 ORTHO05D009449 2.1e-08 63.2 96 42.7
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.8e-08 62.8 131 33.6
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-08 62.8 147 27.9
CANSAT35G0981 Cannabis sativa HOM05D000003 ORTHO05D000167 2.8e-08 62.8 146 27.4
CANSAT76G0001 Cannabis sativa HOM05D000003 ORTHO05D000167 3.6e-08 62.4 145 35.2
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 3.6e-08 62.4 145 29.7
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 3.6e-08 62.4 141 28.4
Lj1g0000509 Lotus japonicus HOM05D000003 ORTHO05D000004 3.6e-08 62.4 143 30.8
Atru.chr10.535 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-08 62.0 140 32.1
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 4.8e-08 62.0 149 30.2
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 4.8e-08 62.0 138 29.7
PSO017G3684 Papaver somniferum HOM05D000003 ORTHO05D001026 6.2e-08 61.6 138 29.7
Rhsim01G0194100 Rhododendron simsii HOM05D018264 ORTHO05D018096 6.2e-08 61.6 140 30.0
BolC5t29150H Brassica oleracea HOM05D001239 ORTHO05D000925 8.1e-08 61.2 148 34.5
FvH4_7g06171 Fragaria vesca HOM05D000003 ORTHO05D000006 8.1e-08 61.2 114 36.0
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.8 142 28.2
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 1.1e-07 60.8 147 34.7
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.4e-07 60.5 153 33.3
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.4e-07 60.5 145 29.7
FvH4_3g43651 Fragaria vesca HOM05D008133 ORTHO05D009449 1.4e-07 60.5 117 40.2
CANSAT64G1068 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-07 60.1 142 28.2
RcHm_v2.0_Chr6g0270721 Rosa chinensis HOM05D011824 ORTHO05D009449 2.4e-07 59.7 74 51.4
BolC4t23673H Brassica oleracea HOM05D001239 ORTHO05D000925 3.1e-07 59.3 145 34.5
FvH4_2g03961 Fragaria vesca HOM05D000003 ORTHO05D000004 3.1e-07 59.3 72 54.2
PSO339G0616 Papaver somniferum HOM05D000003 ORTHO05D001026 3.1e-07 59.3 118 34.7
PSO017G6120 Papaver somniferum HOM05D003407 ORTHO05D001026 4.0e-07 58.9 134 31.3
PSO837G0069 Papaver somniferum HOM05D000003 ORTHO05D001026 4.0e-07 58.9 146 30.1
Atru.chr2.176 Acer truncatum HOM05D000003 ORTHO05D000167 5.3e-07 58.5 85 42.4
CANSAT80G0675 Cannabis sativa HOM05D000003 ORTHO05D000167 5.3e-07 58.5 143 30.8
FvH4_6g24271 Fragaria vesca HOM05D000003 ORTHO05D000004 5.3e-07 58.5 158 36.1
PSO782G1244 Papaver somniferum HOM05D000003 ORTHO05D000004 5.3e-07 58.5 147 32.7
TWI59G0949 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 5.3e-07 58.5 130 30.0
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 5.3e-07 58.5 137 30.7
PSO210G4338 Papaver somniferum HOM05D000003 ORTHO05D000004 6.9e-07 58.2 132 31.8
PSO210G5902 Papaver somniferum HOM05D000003 ORTHO05D001026 6.9e-07 58.2 138 29.0
PSO478G0919 Papaver somniferum HOM05D003407 ORTHO05D001026 6.9e-07 58.2 134 30.6
QL01p007248 Quercus lobata HOM05D000003 ORTHO05D000022 6.9e-07 58.2 143 33.6
Aa31LG2G16130 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.0e-07 57.8 117 34.2
FvH4_7g01171 Fragaria vesca HOM05D000003 ORTHO05D000004 9.0e-07 57.8 153 34.0
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 1.2e-06 57.4 153 29.4
LjContig00201_ERROPOS200000g0010907 Lotus japonicus HOM05D000003 ORTHO05D000126 1.2e-06 57.4 85 41.2
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.2e-06 57.4 138 33.3
RcHm_v2.0_Chr2g0147661 Rosa chinensis HOM05D000003 ORTHO05D010713 1.2e-06 57.4 140 34.3
PSO063G5365 Papaver somniferum HOM05D000003 ORTHO05D000004 1.5e-06 57.0 140 31.4
Rhsim06G0091800 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.5e-06 57.0 144 33.3
CANSAT21G2373 Cannabis sativa HOM05D000003 ORTHO05D000167 2.0e-06 56.6 150 33.3
PSO017G5115 Papaver somniferum HOM05D003407 ORTHO05D001026 2.0e-06 56.6 156 30.8
PSO782G2749 Papaver somniferum HOM05D008740 ORTHO05D006738 2.0e-06 56.6 143 32.9
Aqoxy6G02148 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 2.6e-06 56.2 100 38.0
CANSAT80G2762 Cannabis sativa HOM05D000003 ORTHO05D000167 2.6e-06 56.2 139 34.5
PSO063G1913 Papaver somniferum HOM05D000003 ORTHO05D000004 2.6e-06 56.2 136 34.6
Atru.chr4.1218 Acer truncatum HOM05D000003 ORTHO05D000167 3.4e-06 55.8 142 34.5
CANSAT80G2517 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-06 55.8 142 30.3
PSO063G1248 Papaver somniferum HOM05D003407 ORTHO05D001026 3.4e-06 55.8 140 31.4
PSO782G5746 Papaver somniferum HOM05D000003 ORTHO05D000004 3.4e-06 55.8 142 31.0
FAN17G3058 Fragaria x ananassa HOM05D008133 ORTHO05D009449 4.5e-06 55.5 76 43.4
PSO017G1972 Papaver somniferum HOM05D000003 ORTHO05D000004 4.5e-06 55.5 80 42.5
PSO017G2202 Papaver somniferum HOM05D003407 ORTHO05D001026 4.5e-06 55.5 142 29.6
PSO017G4097 Papaver somniferum HOM05D000003 ORTHO05D000004 4.5e-06 55.5 138 29.7
PSO170G4058 Papaver somniferum HOM05D000003 ORTHO05D001026 4.5e-06 55.5 148 29.1
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 4.5e-06 55.5 142 30.3
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.6e-06 54.7 126 31.0
FvH4_5g35622 Fragaria vesca HOM05D000003 ORTHO05D014221 7.6e-06 54.7 158 27.8
FAN10G3960 Fragaria x ananassa HOM05D011824 ORTHO05D017030 7.6e-06 54.7 77 41.6
PSO017G3156 Papaver somniferum HOM05D003407 ORTHO05D001026 7.6e-06 54.7 144 26.4
BcaB04g18173 Brassica carinata HOM05D001239 ORTHO05D000925 9.9e-06 54.3 148 31.1
CSS0047653 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.9e-06 54.3 83 38.6
PSO210G2487 Papaver somniferum HOM05D003407 ORTHO05D001026 9.9e-06 54.3 147 28.6


User provided reference genes

Program Settings