Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322881 Rosa chinensis HOM05D003760 ORTHO05D004672 6.1e-46 187.2 99 100.0
RcHm_v2.0_Chr1g0322021 Rosa chinensis HOM05D003760 ORTHO05D004672 6.8e-37 157.1 99 90.9
FAN03G0077 Fragaria x ananassa HOM05D003760 ORTHO05D004672 1.3e-35 152.9 99 88.9
FAN01G2043 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.2e-35 152.1 99 88.9
FvH4_7g02780 Fragaria vesca HOM05D003760 ORTHO05D004672 2.8e-35 151.8 99 87.9
FAN06G0531 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.8e-35 151.8 99 87.9
Prupe.2G032300 Prunus persica HOM05D003760 ORTHO05D004672 1.1e-34 149.8 99 85.9
FAN10G4281 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.4e-34 148.7 99 86.9
Sabra03G0148000 Salix brachista HOM05D003760 ORTHO05D004672 1.2e-33 146.4 94 87.2
Ciclev10001295m.g Citrus clementina HOM05D003760 ORTHO05D004672 2.0e-33 145.6 95 86.3
Potri.003G199301 Populus trichocarpa HOM05D003760 ORTHO05D004672 3.5e-33 144.8 94 87.2
Potri.T126106 Populus trichocarpa HOM05D003760 ORTHO05D004672 3.5e-33 144.8 94 87.2
Potri.001G026100 Populus trichocarpa HOM05D003760 ORTHO05D004672 1.0e-32 143.3 94 86.2
Manes.04G165800 Manihot esculenta HOM05D003760 ORTHO05D004672 1.3e-32 142.9 99 82.8
Ciclev10005415m.g Citrus clementina HOM05D003760 ORTHO05D004672 1.7e-32 142.5 94 86.2
MELO3C005125.2 Cucumis melo HOM05D003760 ORTHO05D004672 1.7e-32 142.5 94 86.2
Hund21541 Selenicereus undatus HOM05D003760 ORTHO05D004672 2.3e-32 142.1 94 85.1
AUR62043363 Chenopodium quinoa HOM05D003760 ORTHO05D004672 2.9e-32 141.7 94 85.1
ClCG01G007720 Citrullus lanatus HOM05D003760 ORTHO05D004672 2.9e-32 141.7 94 86.2
Lj9C655T7 Lonicera japonica HOM05D003760 ORTHO05D004672 3.8e-32 141.4 94 83.0
Nn2g14898 Nelumbo nucifera HOM05D003760 ORTHO05D004672 3.8e-32 141.4 94 83.0
TAR636G0376 Trochodendron aralioides HOM05D003760 ORTHO05D004672 3.8e-32 141.4 94 83.0
Cfa006289 Carpinus fangiana HOM05D003760 ORTHO05D004672 5.0e-32 141.0 94 85.1
AUR62033839 Chenopodium quinoa HOM05D003760 ORTHO05D004672 5.0e-32 141.0 94 83.0
COL.COLO4_21460 Corchorus olitorius HOM05D003760 ORTHO05D004672 6.6e-32 140.6 99 81.8
GSVIVG01000658001 Vitis vinifera HOM05D003760 ORTHO05D004672 6.6e-32 140.6 94 84.0
CSS0033000 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 8.6e-32 140.2 94 81.9
Rhsim07G0066200 Rhododendron simsii HOM05D003760 ORTHO05D004672 8.6e-32 140.2 94 81.9
Sabra01G0019300 Salix brachista HOM05D003760 ORTHO05D004672 1.1e-31 139.8 94 84.0
TAR633G0271 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.1e-31 139.8 94 81.9
Atru.chr12.1379 Acer truncatum HOM05D003760 ORTHO05D004672 1.5e-31 139.4 94 84.0
CsaV3_5G024790 Cucumis sativus L. HOM05D003760 ORTHO05D004672 1.5e-31 139.4 94 84.0
TAR633G2507 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.5e-31 139.4 94 80.9
Actinidia19460 Actinidia chinensis HOM05D003760 ORTHO05D004672 1.9e-31 139.0 94 81.9
CiPaw.13G012300 Carya illinoinensis HOM05D003760 ORTHO05D004672 1.9e-31 139.0 99 81.8
TWI63G0088 Tripterygium wilfordii HOM05D003760 ORTHO05D004672 2.5e-31 138.7 99 80.8
QL04p014453 Quercus lobata HOM05D003760 ORTHO05D004672 3.3e-31 138.3 94 84.0
QL04p014818 Quercus lobata HOM05D003760 ORTHO05D004672 3.3e-31 138.3 94 84.0
Cc02_g29710 Coffea canephora HOM05D003760 ORTHO05D004672 4.3e-31 137.9 93 83.9
Sed0003663 Sechium edule HOM05D003760 ORTHO05D004672 4.3e-31 137.9 94 84.0
Thecc.10G166200 Theobroma cacao HOM05D003760 ORTHO05D004672 4.3e-31 137.9 99 79.8
Duzib114G0596 Durio zibethinus HOM05D003760 ORTHO05D004672 5.6e-31 137.5 99 80.8
Ah.11g039100 Amaranthus hybridus HOM05D003760 ORTHO05D004672 7.3e-31 137.1 94 80.9
Cpa.g.sc223.12 Carica papaya HOM05D003760 ORTHO05D004672 1.2e-30 136.3 99 78.8
PGR031G0954 Punica granatum HOM05D003760 ORTHO05D004672 1.2e-30 136.3 99 77.8
Sed0017009 Sechium edule HOM05D003760 ORTHO05D004672 1.2e-30 136.3 93 82.8
Dinv32036 Davidia involucrata HOM05D003760 ORTHO05D004672 1.6e-30 136.0 94 81.9
Sc10g0004370 Simmondsia chinensis HOM05D003760 ORTHO05D004672 1.6e-30 136.0 94 81.9
VMungo0464G1704 Vigna mungo HOM05D003760 ORTHO05D004672 2.1e-30 135.6 99 79.8
arahy.Tifrunner.gnm1.ann1.88C8QI Arachis hypogaea HOM05D003760 ORTHO05D004672 2.8e-30 135.2 99 77.8
arahy.Tifrunner.gnm1.ann1.R8F3HD Arachis hypogaea HOM05D003760 ORTHO05D004672 2.8e-30 135.2 99 77.8
Haze_03069 Corylus avellana HOM05D003760 ORTHO05D004672 2.8e-30 135.2 94 83.0
Glyma.07G090900 Glycine max HOM05D003760 ORTHO05D004672 2.8e-30 135.2 94 81.9
vmacro22865 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 2.8e-30 135.2 93 80.6
Eucgr.G03244 Eucalyptus grandis HOM05D003760 ORTHO05D004672 4.7e-30 134.4 99 76.8
Aqoxy2G00338 Aquilegia oxysepala HOM05D003760 ORTHO05D004672 6.1e-30 134.0 95 80.0
Ca_02468_v3 Cicer arietinum L. HOM05D003760 ORTHO05D004672 6.1e-30 134.0 94 81.9
Glyma.09G185000 Glycine max HOM05D003760 ORTHO05D004672 6.1e-30 134.0 94 83.0
Gohir.A05G281000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 6.1e-30 134.0 99 77.8
Sabra12G0005200 Salix brachista HOM05D003760 ORTHO05D020255 6.1e-30 134.0 96 80.2
Cfa010888 Carpinus fangiana HOM05D003760 ORTHO05D004672 8.0e-30 133.7 94 80.9
Gohir.D05G283000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 8.0e-30 133.7 99 76.8
Gorai.009G296500 Gossypium raimondii HOM05D003760 ORTHO05D004672 8.0e-30 133.7 99 76.8
THA.LOC104818980 Tarenaya hassleriana HOM05D003760 ORTHO05D004672 1.0e-29 133.3 99 76.8
ECA233G5140 Erigeron canadensis HOM05D003760 ORTHO05D004672 1.4e-29 132.9 94 76.6
Phvul.004G157800 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 1.4e-29 132.9 99 78.8
Migut.B01218 Erythranthe guttata HOM05D003760 ORTHO05D004672 1.8e-29 132.5 94 78.7
Lsat_1_v5_gn_5_36241 Lactuca sativa HOM05D003760 ORTHO05D004672 1.8e-29 132.5 94 77.7
MBI13_g01615_MAGBIO Magnolia biondii HOM05D003760 ORTHO05D004672 2.3e-29 132.1 94 79.8
EL10Ac1g02286 Beta vulgaris HOM05D003760 ORTHO05D004672 3.0e-29 131.7 94 75.5
CiPaw.14G006600 Carya illinoinensis HOM05D003760 ORTHO05D004672 3.0e-29 131.7 99 74.7
Dinv09260 Davidia involucrata HOM05D003760 ORTHO05D004672 3.0e-29 131.7 94 79.8
Hma1.2p1_0121F.1_g057510 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 3.0e-29 131.7 94 78.7
Lj3g0013265 Lotus japonicus HOM05D003760 ORTHO05D004672 4.0e-29 131.3 94 80.9
MD02G1290200 Malus domestica HOM05D003760 ORTHO05D004672 4.0e-29 131.3 88 84.1
Medtr5g031790 Medicago truncatula HOM05D003760 ORTHO05D004672 8.9e-29 130.2 94 79.8
Hma1.2p1_1396F.1_g280580 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 1.2e-28 129.8 92 79.3
HanXRQChr12g0382881 Helianthus annuus HOM05D003760 ORTHO05D004672 1.5e-28 129.4 94 77.7
Lalb_Chr08g0234711 Lupinus albus HOM05D003760 ORTHO05D004672 2.0e-28 129.0 94 78.7
HPP92_016595 Vanilla planifolia HOM05D003760 ORTHO05D004672 2.6e-28 128.6 93 78.5
AT3G07300 Arabidopsis thaliana HOM05D003760 ORTHO05D004672 3.4e-28 128.3 94 78.7
MSTRG.20523 Avicennia marina HOM05D003760 ORTHO05D004672 3.4e-28 128.3 93 77.4
CARHR081950 Cardamine hirsuta HOM05D003760 ORTHO05D004672 3.4e-28 128.3 99 73.7
MD07G1036800 Malus domestica HOM05D003760 ORTHO05D004672 4.4e-28 127.9 87 82.8
MSTRG.16994 Avicennia marina HOM05D003760 ORTHO05D004672 5.7e-28 127.5 93 77.4
Lsat_1_v5_gn_8_34020 Lactuca sativa HOM05D003760 ORTHO05D004672 5.7e-28 127.5 94 77.7
AL3G18600 Arabidopsis lyrata HOM05D003760 ORTHO05D004672 7.5e-28 127.1 94 77.7
Oeu015685.1 Olea europaea HOM05D003760 ORTHO05D004672 7.5e-28 127.1 94 76.6
SGA_v2.0_scaffold124G33635 Striga asiatica HOM05D003760 ORTHO05D004672 7.5e-28 127.1 94 75.5
BolC5t34655H Brassica oleracea HOM05D003760 ORTHO05D004672 9.8e-28 126.7 99 73.7
PSO384G0478 Papaver somniferum HOM05D003760 ORTHO05D004672 9.8e-28 126.7 94 74.5
Sp3g06250 Schrenkiella parvula HOM05D003760 ORTHO05D004672 9.8e-28 126.7 99 72.7
Carub.0003s0684 Capsella rubella HOM05D003760 ORTHO05D004672 1.3e-27 126.3 99 73.7
Thhalv10007798m.g Eutrema salsugineum HOM05D003760 ORTHO05D004672 1.7e-27 125.9 99 72.7
PSO339G5967 Papaver somniferum HOM05D003760 ORTHO05D004672 2.2e-27 125.6 94 73.4
A05p40900 Brassica napus HOM05D003760 ORTHO05D004672 2.9e-27 125.2 99 73.7
BraA05t22819Z Brassica rapa HOM05D003760 ORTHO05D004672 2.9e-27 125.2 99 73.7
C05p60000 Brassica napus HOM05D003760 ORTHO05D004672 3.7e-27 124.8 99 71.7
Nitab4.5_0001681g0070 Nicotiana tabacum HOM05D003760 ORTHO05D004672 3.7e-27 124.8 92 75.0
DCAR_022349 Daucus carota HOM05D003760 ORTHO05D004672 6.4e-27 124.0 95 74.7
Glyma.11G154300 Glycine max HOM05D003760 ORTHO05D004672 8.3e-27 123.6 94 75.5
Aa31LG5G17870 Aethionema arabicum HOM05D003760 ORTHO05D004672 1.1e-26 123.2 94 73.4
CDE07G1968 Ceratophyllum demersum HOM05D003760 ORTHO05D004672 1.4e-26 122.9 94 75.5
SalBow5G2833 Salvia bowleyana HOM05D003760 ORTHO05D004672 3.2e-26 121.7 93 73.1
Rhsim02G0042300 Rhododendron simsii HOM05D003760 ORTHO05D004672 2.0e-25 119.0 94 70.2
Phvul.005G029500 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 1.3e-24 116.3 94 74.5
Solyc09g090400.4 Solanum lycopersicum HOM05D003760 ORTHO05D004672 1.3e-24 116.3 94 69.1
Sopen09g033310 Solanum pennellii HOM05D003760 ORTHO05D004672 1.3e-24 116.3 94 69.1
unitig_578.g16298 Utricularia gibba HOM05D003760 ORTHO05D004672 1.3e-24 116.3 94 70.2
SEGI_21043 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 1.7e-24 115.9 94 68.1
CAN.G220.44 Capsicum annuum HOM05D003760 ORTHO05D004672 2.3e-24 115.5 94 69.1
PGSC0003DMG400017207 Solanum tuberosum HOM05D003760 ORTHO05D004672 2.3e-24 115.5 94 69.1
BcaB04g21296 Brassica carinata HOM05D003760 ORTHO05D004672 3.0e-24 115.2 95 72.6
CAN.G476.4 Capsicum annuum HOM05D003760 ORTHO05D004672 6.6e-24 114.0 90 72.2
Actinidia39916 Actinidia chinensis HOM05D003760 ORTHO05D004672 8.6e-24 113.6 94 71.3
FAN03G0469 Fragaria x ananassa HOM05D003760 ORTHO05D020255 8.6e-24 113.6 68 92.6
Nitab4.5_0006936g0020 Nicotiana tabacum HOM05D003760 ORTHO05D004672 8.6e-24 113.6 92 70.7
SEGI_24692 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 8.6e-24 113.6 99 64.6
Nitab4.5_0001425g0120 Nicotiana tabacum HOM05D003760 ORTHO05D004672 1.5e-23 112.8 92 70.7
BNapus_Darmor_BZH_scaffold_109p00130 Brassica napus HOM05D003760 ORTHO05D004672 2.5e-23 112.1 117 59.0
Peaxi162Scf00602g00420 Petunia axillaris HOM05D003760 ORTHO05D004672 3.3e-23 111.7 94 70.2
Solyc11g005600.2 Solanum lycopersicum HOM05D003760 ORTHO05D004672 3.3e-23 111.7 90 71.1
Sopen11g001570 Solanum pennellii HOM05D003760 ORTHO05D004672 3.3e-23 111.7 90 71.1
Potri.010G068600 Populus trichocarpa HOM05D003760 ORTHO05D004672 4.3e-23 111.3 94 67.0
Zm00001eb048720 Zea mays HOM05D003760 ORTHO05D004672 4.3e-23 111.3 96 66.7
ATR0075G007 Amborella trichopoda HOM05D003760 ORTHO05D004672 5.6e-23 110.9 94 69.1
Zm00001eb223560 Zea mays HOM05D003760 ORTHO05D004672 5.6e-23 110.9 96 66.7
vmacro15463 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 7.3e-23 110.5 94 66.0
Sabra10G0038400 Salix brachista HOM05D003760 ORTHO05D004672 2.8e-22 108.6 94 67.0
Pp3c10_19890 Physcomitrium patens HOM05D003760 ORTHO05D004672 1.8e-21 105.9 94 62.8
AUR62042161 Chenopodium quinoa HOM05D003760 ORTHO05D004672 5.2e-21 104.4 81 72.8
Atru.chr4.1982 Acer truncatum HOM05D003760 ORTHO05D004672 6.8e-21 104.0 94 67.0
Pp3c21_14090 Physcomitrium patens HOM05D003760 ORTHO05D004672 2.0e-20 102.4 94 60.6
QL06p019987 Quercus lobata HOM05D003760 ORTHO05D004672 2.0e-20 102.4 91 65.9
SMO340G0195 Selaginella moellendorffii HOM05D003760 ORTHO05D004672 5.8e-20 100.9 92 60.9
Mapoly0105s0017 Marchantia polymorpha HOM05D003760 ORTHO05D004672 2.9e-19 98.6 99 58.6
Psat3g180400 Pisum sativum HOM05D003760 ORTHO05D020255 1.1e-18 96.7 68 77.9
Ciclev10006759m.g Citrus clementina HOM05D003760 ORTHO05D004672 1.9e-18 95.9 94 60.6
Prupe.1G044800 Prunus persica HOM05D003760 ORTHO05D004672 1.9e-18 95.9 93 65.6
Cc03_g05880 Coffea canephora HOM05D003760 ORTHO05D020255 2.4e-18 95.5 109 56.0
COL.COLO4_15929 Corchorus olitorius HOM05D003760 ORTHO05D004672 3.2e-18 95.1 92 63.0
AagrBONN_evm.TU.Sc2ySwM_344.807 Anthoceros agrestis HOM05D003760 ORTHO05D004672 1.6e-17 92.8 94 55.3
TPR.G36778 Trifolium pratense HOM05D003760 ORTHO05D004672 4.6e-17 91.3 95 58.9
RcHm_v2.0_Chr4g0394571 Rosa chinensis HOM05D003760 ORTHO05D004672 2.5e-15 85.5 91 59.3
CSS0026575 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D020255 3.3e-15 85.1 68 66.2
CDE04G3266 Ceratophyllum demersum HOM05D000656 ORTHO05D000871 6.2e-14 80.9 68 67.6
FvH4_4g04150 Fragaria vesca HOM05D003760 ORTHO05D004672 4.0e-13 78.2 92 55.4
FAN12G0242 Fragaria x ananassa HOM05D003760 ORTHO05D004672 4.0e-13 78.2 92 55.4
FAN22G1391 Fragaria x ananassa HOM05D003760 ORTHO05D004672 8.9e-13 77.0 92 54.3
Nitab4.5_0000320g0110 Nicotiana tabacum HOM05D003760 ORTHO05D004672 8.9e-13 77.0 53 75.5
FAN17G2831 Fragaria x ananassa HOM05D003760 ORTHO05D004672 4.4e-12 74.7 92 53.3
Oeu035508.1 Olea europaea HOM05D003760 ORTHO05D020255 2.2e-11 72.4 68 57.4
MD13G1218100 Malus domestica HOM05D003760 ORTHO05D020255 5.4e-10 67.8 69 58.0
Psat6g019960 Pisum sativum HOM05D003760 ORTHO05D004672 1.0e-08 63.5 48 72.9
CBR_g42076 Chara braunii HOM05D003760 ORTHO05D004672 1.1e-07 60.1 65 50.8
Cre16.g662902 Chlamydomonas reinhardtii HOM05D003760 ORTHO05D004672 9.5e-07 57.0 69 49.3
MCO16G454 Micromonas commoda HOM05D003760 ORTHO05D004672 9.5e-07 57.0 85 41.2
Actinidia06249 Actinidia chinensis HOM05D003760 ORTHO05D004672 3.6e-06 55.1 38 73.7
BolC1t05559H Brassica oleracea HOM05D003760 ORTHO05D004672 3.6e-06 55.1 36 83.3
BraA01t04387Z Brassica rapa HOM05D003760 ORTHO05D004672 3.6e-06 55.1 36 83.3


User provided reference genes

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