Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322871 Rosa chinensis HOM05D003760 ORTHO05D050733 1.4e-24 115.5 61 100.0
RcHm_v2.0_Chr1g0322021 Rosa chinensis HOM05D003760 ORTHO05D004672 9.0e-24 112.8 60 98.3
FAN03G0077 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.6e-23 111.3 60 96.7
FAN10G4281 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.6e-23 111.3 60 96.7
FAN01G2043 Fragaria x ananassa HOM05D003760 ORTHO05D004672 1.7e-22 108.6 60 95.0
Prupe.2G032300 Prunus persica HOM05D003760 ORTHO05D004672 2.2e-22 108.2 60 93.3
COL.COLO4_21460 Corchorus olitorius HOM05D003760 ORTHO05D004672 3.8e-22 107.5 60 91.7
Thecc.10G166200 Theobroma cacao HOM05D003760 ORTHO05D004672 3.8e-22 107.5 60 91.7
Manes.04G165800 Manihot esculenta HOM05D003760 ORTHO05D004672 5.0e-22 107.1 60 93.3
CiPaw.13G012300 Carya illinoinensis HOM05D003760 ORTHO05D004672 8.5e-22 106.3 60 90.0
Duzib114G0596 Durio zibethinus HOM05D003760 ORTHO05D004672 8.5e-22 106.3 60 91.7
Haze_03069 Corylus avellana HOM05D003760 ORTHO05D004672 1.9e-21 105.1 60 88.3
MD07G1036800 Malus domestica HOM05D003760 ORTHO05D004672 1.9e-21 105.1 60 90.0
Gohir.D05G283000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 2.5e-21 104.8 60 90.0
Gorai.009G296500 Gossypium raimondii HOM05D003760 ORTHO05D004672 2.5e-21 104.8 60 90.0
Cfa006289 Carpinus fangiana HOM05D003760 ORTHO05D004672 3.2e-21 104.4 60 88.3
PGR031G0954 Punica granatum HOM05D003760 ORTHO05D004672 5.5e-21 103.6 60 90.0
AUR62033839 Chenopodium quinoa HOM05D003760 ORTHO05D004672 9.3e-21 102.8 60 86.7
TAR633G0271 Trochodendron aralioides HOM05D003760 ORTHO05D004672 9.3e-21 102.8 58 91.4
TAR633G2507 Trochodendron aralioides HOM05D003760 ORTHO05D004672 9.3e-21 102.8 58 91.4
GSVIVG01000658001 Vitis vinifera HOM05D003760 ORTHO05D004672 9.3e-21 102.8 60 86.7
Potri.001G026100 Populus trichocarpa HOM05D003760 ORTHO05D004672 1.2e-20 102.4 60 88.3
Cfa010888 Carpinus fangiana HOM05D003760 ORTHO05D004672 1.6e-20 102.1 60 86.7
Nn2g14898 Nelumbo nucifera HOM05D003760 ORTHO05D004672 1.6e-20 102.1 60 85.0
arahy.Tifrunner.gnm1.ann1.88C8QI Arachis hypogaea HOM05D003760 ORTHO05D004672 2.1e-20 101.7 60 85.0
arahy.Tifrunner.gnm1.ann1.R8F3HD Arachis hypogaea HOM05D003760 ORTHO05D004672 2.1e-20 101.7 60 85.0
Gohir.A05G281000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 2.1e-20 101.7 60 88.3
Potri.003G199301 Populus trichocarpa HOM05D003760 ORTHO05D004672 2.1e-20 101.7 60 86.7
Potri.T126106 Populus trichocarpa HOM05D003760 ORTHO05D004672 2.1e-20 101.7 60 86.7
Sabra03G0148000 Salix brachista HOM05D003760 ORTHO05D004672 2.1e-20 101.7 60 86.7
FvH4_7g02780 Fragaria vesca HOM05D003760 ORTHO05D004672 2.7e-20 101.3 60 93.3
FAN06G0531 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.7e-20 101.3 60 93.3
QL04p014453 Quercus lobata HOM05D003760 ORTHO05D004672 2.7e-20 101.3 60 86.7
QL04p014818 Quercus lobata HOM05D003760 ORTHO05D004672 2.7e-20 101.3 60 86.7
Sabra01G0019300 Salix brachista HOM05D003760 ORTHO05D004672 2.7e-20 101.3 60 83.3
Hund21541 Selenicereus undatus HOM05D003760 ORTHO05D004672 2.7e-20 101.3 60 88.3
Ah.11g039100 Amaranthus hybridus HOM05D003760 ORTHO05D004672 3.6e-20 100.9 60 86.7
Cpa.g.sc223.12 Carica papaya HOM05D003760 ORTHO05D004672 3.6e-20 100.9 59 86.4
Hma1.2p1_0121F.1_g057510 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 4.6e-20 100.5 60 85.0
Lj3g0013265 Lotus japonicus HOM05D003760 ORTHO05D004672 4.6e-20 100.5 60 86.7
TWI63G0088 Tripterygium wilfordii HOM05D003760 ORTHO05D004672 4.6e-20 100.5 60 86.7
TAR636G0376 Trochodendron aralioides HOM05D003760 ORTHO05D004672 4.6e-20 100.5 59 89.8
CiPaw.14G006600 Carya illinoinensis HOM05D003760 ORTHO05D004672 6.1e-20 100.1 60 86.7
Dinv09260 Davidia involucrata HOM05D003760 ORTHO05D004672 6.1e-20 100.1 60 86.7
Eucgr.G03244 Eucalyptus grandis HOM05D003760 ORTHO05D004672 6.1e-20 100.1 60 85.0
MBI13_g01615_MAGBIO Magnolia biondii HOM05D003760 ORTHO05D004672 1.0e-19 99.4 60 83.3
Ciclev10001295m.g Citrus clementina HOM05D003760 ORTHO05D004672 1.3e-19 99.0 59 89.8
Ciclev10005415m.g Citrus clementina HOM05D003760 ORTHO05D004672 1.3e-19 99.0 59 89.8
Dinv32036 Davidia involucrata HOM05D003760 ORTHO05D004672 1.3e-19 99.0 60 85.0
Medtr5g031790 Medicago truncatula HOM05D003760 ORTHO05D004672 2.3e-19 98.2 59 88.1
CSS0033000 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 3.0e-19 97.8 60 85.0
EL10Ac1g02286 Beta vulgaris HOM05D003760 ORTHO05D004672 3.9e-19 97.4 60 81.7
PSO339G5967 Papaver somniferum HOM05D003760 ORTHO05D004672 3.9e-19 97.4 60 81.7
PSO384G0478 Papaver somniferum HOM05D003760 ORTHO05D004672 3.9e-19 97.4 60 81.7
Psat6g019840 Pisum sativum HOM05D003760 ORTHO05D004672 3.9e-19 97.4 59 88.1
Actinidia19460 Actinidia chinensis HOM05D003760 ORTHO05D004672 6.7e-19 96.7 60 81.7
ClCG01G007720 Citrullus lanatus HOM05D003760 ORTHO05D004672 1.1e-18 95.9 60 85.0
Sed0003663 Sechium edule HOM05D003760 ORTHO05D004672 1.1e-18 95.9 60 83.3
Ca_02468_v3 Cicer arietinum L. HOM05D003760 ORTHO05D004672 1.5e-18 95.5 59 86.4
MELO3C005125.2 Cucumis melo HOM05D003760 ORTHO05D004672 1.5e-18 95.5 60 83.3
CsaV3_5G024790 Cucumis sativus L. HOM05D003760 ORTHO05D004672 1.5e-18 95.5 60 83.3
Sc10g0004370 Simmondsia chinensis HOM05D003760 ORTHO05D004672 1.5e-18 95.5 60 81.7
HPP92_016595 Vanilla planifolia HOM05D003760 ORTHO05D004672 1.5e-18 95.5 60 78.3
DCAR_022349 Daucus carota HOM05D003760 ORTHO05D004672 2.5e-18 94.7 60 78.3
Cc02_g29710 Coffea canephora HOM05D003760 ORTHO05D004672 3.3e-18 94.4 60 80.0
CAN.G476.4 Capsicum annuum HOM05D003760 ORTHO05D004672 9.7e-18 92.8 60 78.3
Solyc11g005600.2 Solanum lycopersicum HOM05D003760 ORTHO05D004672 9.7e-18 92.8 60 78.3
THA.LOC104818980 Tarenaya hassleriana HOM05D003760 ORTHO05D004672 9.7e-18 92.8 59 79.7
Migut.B01218 Erythranthe guttata HOM05D003760 ORTHO05D004672 1.6e-17 92.0 59 81.4
Sopen11g001570 Solanum pennellii HOM05D003760 ORTHO05D004672 2.2e-17 91.7 60 78.3
Oeu015685.1 Olea europaea HOM05D003760 ORTHO05D004672 2.8e-17 91.3 60 78.3
Lj9C655T7 Lonicera japonica HOM05D003760 ORTHO05D004672 3.7e-17 90.9 60 81.7
Phvul.004G157800 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 6.3e-17 90.1 58 79.3
CDE07G1968 Ceratophyllum demersum HOM05D003760 ORTHO05D004672 8.2e-17 89.7 60 76.7
Sed0017009 Sechium edule HOM05D003760 ORTHO05D004672 8.2e-17 89.7 60 78.3
MSTRG.20523 Avicennia marina HOM05D003760 ORTHO05D004672 1.4e-16 89.0 60 75.0
AUR62043363 Chenopodium quinoa HOM05D003760 ORTHO05D004672 3.1e-16 87.8 60 80.0
Hma1.2p1_1396F.1_g280580 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 3.1e-16 87.8 60 76.7
AUR62042161 Chenopodium quinoa HOM05D003760 ORTHO05D004672 4.1e-16 87.4 60 80.0
Duzib128G1330 Durio zibethinus HOM05D003760 ORTHO05D004672 4.1e-16 87.4 55 78.2
Peaxi162Scf01732g00023 Petunia axillaris HOM05D003760 ORTHO05D004672 4.1e-16 87.4 53 84.9
Aqoxy2G00338 Aquilegia oxysepala HOM05D003760 ORTHO05D004672 6.9e-16 86.7 60 80.0
Nitab4.5_0001681g0070 Nicotiana tabacum HOM05D003760 ORTHO05D004672 6.9e-16 86.7 70 68.6
SGA_v2.0_scaffold124G33635 Striga asiatica HOM05D003760 ORTHO05D004672 1.5e-15 85.5 60 70.0
MSTRG.16994 Avicennia marina HOM05D003760 ORTHO05D004672 2.0e-15 85.1 60 73.3
Phvul.005G029500 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 2.0e-15 85.1 58 77.6
Thhalv10007798m.g Eutrema salsugineum HOM05D003760 ORTHO05D004672 2.6e-15 84.7 59 72.9
vmacro22865 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 3.4e-15 84.3 53 79.2
BraA05t22819Z Brassica rapa HOM05D003760 ORTHO05D004672 4.5e-15 84.0 59 72.9
CARHR081950 Cardamine hirsuta HOM05D003760 ORTHO05D004672 4.5e-15 84.0 60 70.0
BolC5t34655H Brassica oleracea HOM05D003760 ORTHO05D004672 7.7e-15 83.2 59 72.9
Rhsim07G0066200 Rhododendron simsii HOM05D003760 ORTHO05D004672 7.7e-15 83.2 72 65.3
Atru.chr12.1379 Acer truncatum HOM05D003760 ORTHO05D004672 1.7e-14 82.0 60 75.0
Glyma.11G154300 Glycine max HOM05D003760 ORTHO05D004672 2.2e-14 81.6 58 74.1
Aa31LG5G17870 Aethionema arabicum HOM05D003760 ORTHO05D004672 2.9e-14 81.3 59 72.9
ATR0075G007 Amborella trichopoda HOM05D003760 ORTHO05D004672 3.8e-14 80.9 60 70.0
Lsat_1_v5_gn_8_34020 Lactuca sativa HOM05D003760 ORTHO05D004672 5.0e-14 80.5 60 68.3
ECA233G5140 Erigeron canadensis HOM05D003760 ORTHO05D004672 6.5e-14 80.1 60 70.0
AT3G07300 Arabidopsis thaliana HOM05D003760 ORTHO05D004672 1.9e-13 78.6 59 69.5
GSVIVG01024428001 Vitis vinifera HOM05D003760 ORTHO05D050733 1.9e-13 78.6 53 77.4
Sp3g06250 Schrenkiella parvula HOM05D003760 ORTHO05D004672 2.5e-13 78.2 59 69.5
MD02G1290200 Malus domestica HOM05D003760 ORTHO05D004672 3.2e-13 77.8 44 90.9
A05p40900 Brassica napus HOM05D003760 ORTHO05D004672 5.5e-13 77.0 59 69.5
AL3G18600 Arabidopsis lyrata HOM05D003760 ORTHO05D004672 7.2e-13 76.6 59 67.8
BNapus_Darmor_BZH_scaffold_109p00130 Brassica napus HOM05D003760 ORTHO05D004672 7.2e-13 76.6 59 69.5
Carub.0003s0684 Capsella rubella HOM05D003760 ORTHO05D004672 7.2e-13 76.6 59 67.8
BcaB04g21296 Brassica carinata HOM05D003760 ORTHO05D004672 9.4e-13 76.3 59 67.8
C05p60000 Brassica napus HOM05D003760 ORTHO05D004672 9.4e-13 76.3 59 69.5
BolC1t05559H Brassica oleracea HOM05D003760 ORTHO05D004672 9.4e-13 76.3 59 67.8
BraA01t04387Z Brassica rapa HOM05D003760 ORTHO05D004672 9.4e-13 76.3 59 67.8
VMungo0464G1704 Vigna mungo HOM05D003760 ORTHO05D004672 1.2e-12 75.9 49 79.6
Nitab4.5_0000320g0110 Nicotiana tabacum HOM05D003760 ORTHO05D004672 2.1e-12 75.1 60 66.7
SEGI_21043 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 2.1e-12 75.1 60 66.7
Glyma.09G185000 Glycine max HOM05D003760 ORTHO05D004672 2.7e-12 74.7 47 78.7
CAN.G220.44 Capsicum annuum HOM05D003760 ORTHO05D004672 4.6e-12 73.9 63 71.4
HanXRQChr12g0382881 Helianthus annuus HOM05D003760 ORTHO05D004672 4.6e-12 73.9 46 82.6
Nitab4.5_0001425g0120 Nicotiana tabacum HOM05D003760 ORTHO05D004672 7.9e-12 73.2 63 71.4
Nitab4.5_0006936g0020 Nicotiana tabacum HOM05D003760 ORTHO05D004672 7.9e-12 73.2 63 71.4
Peaxi162Scf00602g00420 Petunia axillaris HOM05D003760 ORTHO05D004672 7.9e-12 73.2 62 71.0
Glyma.07G090900 Glycine max HOM05D003760 ORTHO05D004672 1.0e-11 72.8 46 78.3
Lalb_Chr08g0234711 Lupinus albus HOM05D003760 ORTHO05D004672 1.0e-11 72.8 60 66.7
PGSC0003DMG400017207 Solanum tuberosum HOM05D003760 ORTHO05D004672 3.0e-11 71.2 52 75.0
Solyc09g090400.4 Solanum lycopersicum HOM05D003760 ORTHO05D004672 3.9e-11 70.9 52 75.0
Sabra10G0038400 Salix brachista HOM05D003760 ORTHO05D004672 8.8e-11 69.7 59 61.0
Atru.chr4.1982 Acer truncatum HOM05D003760 ORTHO05D004672 5.7e-10 67.0 60 61.7
Psat6g019960 Pisum sativum HOM05D003760 ORTHO05D004672 5.7e-10 67.0 36 91.7
Sopen09g033310 Solanum pennellii HOM05D003760 ORTHO05D004672 5.7e-10 67.0 52 73.1
Os10g0392700 Oryza sativa ssp. japonica HOM05D003760 ORTHO05D004672 7.4e-10 66.6 60 58.3
Lsat_1_v5_gn_5_36241 Lactuca sativa HOM05D003760 ORTHO05D004672 2.2e-09 65.1 60 65.0
Zm00001eb223560 Zea mays HOM05D003760 ORTHO05D004672 6.3e-09 63.5 60 56.7
unitig_578.g16298 Utricularia gibba HOM05D003760 ORTHO05D004672 1.1e-08 62.8 60 60.0
Zm00001eb048720 Zea mays HOM05D003760 ORTHO05D004672 1.1e-08 62.8 60 56.7
Potri.010G068600 Populus trichocarpa HOM05D003760 ORTHO05D004672 2.4e-08 61.6 59 59.3
Actinidia39916 Actinidia chinensis HOM05D003760 ORTHO05D004672 5.3e-08 60.5 40 75.0
Mapoly0105s0017 Marchantia polymorpha HOM05D003760 ORTHO05D004672 7.7e-07 56.6 60 50.0
CSS0016471 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 1.3e-06 55.8 40 70.0
SEGI_24692 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 1.3e-06 55.8 60 53.3
AagrBONN_evm.TU.Sc2ySwM_344.807 Anthoceros agrestis HOM05D003760 ORTHO05D004672 3.8e-06 54.3 59 52.5
Rhsim02G0042300 Rhododendron simsii HOM05D003760 ORTHO05D004672 8.5e-06 53.1 41 61.0


User provided reference genes

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