Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 9.2e-40 166.4 82 100.0
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 1.0e-30 136.3 82 81.7
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 8.1e-28 126.7 73 82.2
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 8.1e-28 126.7 73 83.6
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 3.1e-27 124.8 73 82.2
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.1e-27 124.8 73 82.2
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.4e-26 121.3 73 79.5
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 5.4e-24 114.0 73 69.9
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 9.3e-24 113.2 72 70.8
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 4.6e-23 110.9 72 70.8
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 6.0e-23 110.5 71 71.8
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 6.0e-23 110.5 72 69.4
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 7.9e-23 110.2 89 60.7
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 3.9e-22 107.8 72 73.6
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 3.9e-22 107.8 73 67.1
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 3.9e-22 107.8 73 68.5
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 3.9e-22 107.8 73 68.5
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 3.9e-22 107.8 68 73.5
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 3.9e-22 107.8 68 73.5
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 5.1e-22 107.5 68 70.6
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 5.1e-22 107.5 71 71.8
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 6.7e-22 107.1 66 74.2
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 8.7e-22 106.7 73 65.8
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.1e-21 106.3 73 65.8
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 1.1e-21 106.3 69 73.9
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.5e-21 105.9 73 68.5
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.9e-21 105.5 69 73.9
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.9e-21 105.5 71 70.4
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 2.5e-21 105.1 67 73.1
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 3.3e-21 104.8 69 72.5
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 4.3e-21 104.4 73 65.8
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 5.6e-21 104.0 65 72.3
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 7.4e-21 103.6 70 68.6
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 7.4e-21 103.6 73 64.4
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 7.4e-21 103.6 63 74.6
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 7.4e-21 103.6 63 74.6
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 9.6e-21 103.2 72 63.9
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.8e-20 101.7 62 69.4
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 2.8e-20 101.7 59 76.3
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 2.8e-20 101.7 73 63.0
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 3.7e-20 101.3 69 66.7
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 4.8e-20 100.9 75 65.3
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 4.8e-20 100.9 62 72.6
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 6.2e-20 100.5 73 58.9
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 1.1e-19 99.8 67 70.1
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 1.1e-19 99.8 73 61.6
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 1.1e-19 99.8 73 64.4
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 1.1e-19 99.8 61 75.4
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.8e-19 99.0 62 72.6
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.8e-19 99.0 75 61.3
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 2.4e-19 98.6 70 64.3
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 2.4e-19 98.6 73 63.0
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 3.1e-19 98.2 59 72.9
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 4.0e-19 97.8 73 60.3
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 5.3e-19 97.4 62 71.0
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 5.3e-19 97.4 61 70.5
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 5.3e-19 97.4 72 59.7
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 6.9e-19 97.1 73 58.9
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 6.9e-19 97.1 73 60.3
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 9.0e-19 96.7 73 57.5
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 1.5e-18 95.9 70 60.0
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 2.0e-18 95.5 73 58.9
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.0e-18 95.5 57 71.9
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 2.6e-18 95.1 61 65.6
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 2.6e-18 95.1 62 71.0
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 2.6e-18 95.1 57 71.9
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 2.6e-18 95.1 61 67.2
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 3.4e-18 94.7 61 68.9
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 3.4e-18 94.7 61 68.9
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 3.4e-18 94.7 61 68.9
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 3.4e-18 94.7 61 68.9
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 3.4e-18 94.7 61 68.9
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 3.4e-18 94.7 61 68.9
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 3.4e-18 94.7 61 68.9
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 3.4e-18 94.7 70 60.0
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 3.4e-18 94.7 73 58.9
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 3.4e-18 94.7 73 58.9
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 3.4e-18 94.7 65 70.8
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 4.5e-18 94.4 66 65.2
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 7.6e-18 93.6 71 57.7
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 1.0e-17 93.2 62 62.9
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 1.0e-17 93.2 58 74.1
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.0e-17 93.2 70 60.0
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-17 92.8 61 65.6
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-17 92.8 61 65.6
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.2e-17 92.0 72 58.3
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 2.2e-17 92.0 60 70.0
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 2.2e-17 92.0 61 65.6
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.9e-17 91.7 57 70.2
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 2.9e-17 91.7 55 72.7
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 3.8e-17 91.3 55 74.5
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 4.9e-17 90.9 61 65.6
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 8.4e-17 90.1 66 60.6
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 1.1e-16 89.7 57 70.2
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 1.4e-16 89.4 66 62.1
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 3.2e-16 88.2 106 48.1
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 4.2e-16 87.8 61 65.6
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 9.3e-16 86.7 55 69.1
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 4.6e-15 84.3 56 66.1
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 1.3e-14 82.8 63 63.5
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 1.3e-14 82.8 57 64.9
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 2.8e-12 75.1 110 43.6
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.1e-11 73.2 55 58.2
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 4.0e-11 71.2 55 60.0
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 5.8e-10 67.4 63 52.4
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 2.2e-09 65.5 62 46.8
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 7.9e-07 57.0 64 39.1
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.3e-06 55.5 32 84.4


User provided reference genes

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