Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-34 149.1 78 100.0
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 2.2e-22 108.6 66 86.4
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 1.4e-21 105.9 64 85.9
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 2.4e-21 105.1 66 83.3
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.4e-21 105.1 66 83.3
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.4e-21 105.1 66 83.3
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.4e-21 105.1 66 83.3
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.0e-19 99.8 65 80.0
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 2.9e-19 98.2 66 77.3
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 6.6e-19 97.1 65 76.9
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 2.5e-18 95.1 65 76.9
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 4.2e-18 94.4 66 74.2
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 5.5e-18 94.0 55 87.3
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 2.8e-17 91.7 65 73.8
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 3.6e-17 91.3 66 72.7
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 4.7e-17 90.9 64 73.4
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.0e-16 89.7 66 66.7
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.0e-16 89.7 66 66.7
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.0e-16 89.7 64 67.2
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.4e-16 89.4 64 70.3
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 1.8e-16 89.0 66 68.2
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 2.3e-16 88.6 64 67.2
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 3.0e-16 88.2 66 68.2
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 4.0e-16 87.8 64 68.8
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 6.8e-16 87.0 64 65.6
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 8.9e-16 86.7 64 71.9
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 1.2e-15 86.3 66 63.6
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.2e-15 86.3 64 64.1
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 1.5e-15 85.9 64 65.6
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 2.0e-15 85.5 64 67.2
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 2.0e-15 85.5 64 62.5
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 2.0e-15 85.5 64 62.5
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 2.0e-15 85.5 64 62.5
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 2.0e-15 85.5 64 64.1
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 2.6e-15 85.1 63 69.8
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 2.6e-15 85.1 64 67.2
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 2.6e-15 85.1 66 65.2
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 3.4e-15 84.7 64 70.3
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 3.4e-15 84.7 66 62.1
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 4.4e-15 84.3 66 65.2
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 4.4e-15 84.3 64 67.2
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 4.4e-15 84.3 64 65.6
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 4.4e-15 84.3 64 65.6
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 4.4e-15 84.3 66 62.1
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 4.4e-15 84.3 66 62.1
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 5.7e-15 84.0 66 60.6
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 5.7e-15 84.0 64 65.6
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 5.7e-15 84.0 64 64.1
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 7.5e-15 83.6 66 60.6
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 7.5e-15 83.6 64 64.1
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 7.5e-15 83.6 64 64.1
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 7.5e-15 83.6 64 64.1
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 7.5e-15 83.6 64 65.6
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 7.5e-15 83.6 64 65.6
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 9.8e-15 83.2 64 62.5
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.3e-14 82.8 64 59.4
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 1.7e-14 82.4 64 60.9
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.7e-14 82.4 64 62.5
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 2.9e-14 81.6 64 65.6
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 2.9e-14 81.6 64 65.6
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 3.7e-14 81.3 66 59.1
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 4.9e-14 80.9 64 60.9
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 8.3e-14 80.1 60 66.7
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 1.4e-13 79.3 64 57.8
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 1.8e-13 79.0 64 62.5
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.8e-13 79.0 66 62.1
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 4.1e-13 77.8 63 57.1
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 4.1e-13 77.8 69 62.3
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 4.1e-13 77.8 63 60.3
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 7.0e-13 77.0 66 63.6
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 7.0e-13 77.0 64 57.8
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 2.0e-12 75.5 63 61.9
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.0e-12 75.5 63 61.9
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 2.7e-12 75.1 63 57.1
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 3.5e-12 74.7 64 59.4
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 4.6e-12 74.3 62 59.7
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 5.9e-12 73.9 64 56.2
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 5.9e-12 73.9 64 56.2
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 7.8e-12 73.6 63 57.1
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 7.8e-12 73.6 66 62.1
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 7.8e-12 73.6 64 56.2
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.3e-11 72.8 64 53.1
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.7e-11 72.4 67 53.7
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 2.9e-11 71.6 63 57.1
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 2.9e-11 71.6 63 57.1
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 5.0e-11 70.9 65 55.4
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 5.0e-11 70.9 65 55.4
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 6.6e-11 70.5 64 53.1
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 6.6e-11 70.5 64 54.7
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 6.6e-11 70.5 64 54.7
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 8.6e-11 70.1 65 55.4
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 8.6e-11 70.1 65 55.4
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 8.6e-11 70.1 65 55.4
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 8.6e-11 70.1 65 55.4
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 1.1e-10 69.7 64 51.6
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.1e-10 69.7 63 63.5
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 1.5e-10 69.3 64 54.7
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 2.5e-10 68.6 45 82.2
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 5.6e-10 67.4 63 52.4
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 2.8e-09 65.1 64 48.4
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 2.8e-09 65.1 64 53.1
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 8.0e-09 63.5 70 45.7
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 5.2e-08 60.8 60 53.3
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 2.6e-07 58.5 65 55.4
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 9.8e-07 56.6 55 60.0
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.7e-06 55.8 43 67.4
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.7e-06 55.8 70 44.3
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 3.7e-06 54.7 51 56.9


User provided reference genes

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