Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 2.9e-24 114.4 57 100.0
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 4.5e-17 90.5 50 92.0
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 5.9e-17 90.1 50 92.0
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 5.9e-17 90.1 50 92.0
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 5.9e-17 90.1 50 92.0
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 5.9e-17 90.1 50 90.0
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 1.0e-16 89.4 50 90.0
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.0e-16 89.4 50 88.0
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 1.3e-16 89.0 50 88.0
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-15 85.9 50 86.0
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 4.2e-15 84.0 50 84.0
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 4.2e-15 84.0 50 84.0
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.1e-12 75.9 50 72.0
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 1.1e-12 75.9 50 74.0
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.1e-12 75.9 53 69.8
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 1.5e-12 75.5 50 74.0
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 2.5e-12 74.7 53 66.0
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 3.3e-12 74.3 50 76.0
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 4.3e-12 73.9 50 72.0
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 4.3e-12 73.9 50 72.0
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 5.7e-12 73.6 50 72.0
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 7.4e-12 73.2 53 67.9
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 7.4e-12 73.2 50 70.0
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 9.7e-12 72.8 50 72.0
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 9.7e-12 72.8 50 70.0
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 1.3e-11 72.4 50 72.0
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.7e-11 72.0 50 68.0
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 1.7e-11 72.0 50 70.0
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 1.7e-11 72.0 53 60.4
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 2.8e-11 71.2 50 68.0
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 2.8e-11 71.2 50 80.0
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 6.3e-11 70.1 50 70.0
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 6.3e-11 70.1 50 64.0
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 8.2e-11 69.7 50 70.0
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 1.1e-10 69.3 50 68.0
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 1.1e-10 69.3 50 70.0
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 1.1e-10 69.3 50 66.0
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.1e-10 69.3 50 68.0
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.4e-10 68.9 50 68.0
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.4e-10 68.9 50 64.0
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.4e-10 68.9 50 64.0
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.4e-10 68.9 50 66.0
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.4e-10 68.9 50 66.0
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.4e-10 68.9 50 66.0
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.8e-10 68.6 50 66.0
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.8e-10 68.6 50 68.0
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.8e-10 68.6 50 70.0
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 2.4e-10 68.2 50 68.0
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 2.4e-10 68.2 50 64.0
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 2.4e-10 68.2 50 64.0
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 2.4e-10 68.2 50 66.0
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 3.1e-10 67.8 50 60.0
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 3.1e-10 67.8 50 60.0
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 3.1e-10 67.8 49 63.3
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 3.1e-10 67.8 50 68.0
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 3.1e-10 67.8 50 68.0
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 3.1e-10 67.8 50 64.0
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 3.1e-10 67.8 50 68.0
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 3.1e-10 67.8 53 64.2
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 4.1e-10 67.4 50 60.0
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 4.1e-10 67.4 50 60.0
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 4.1e-10 67.4 50 60.0
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 4.1e-10 67.4 50 60.0
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 4.1e-10 67.4 50 60.0
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 5.3e-10 67.0 50 60.0
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 6.9e-10 66.6 50 60.0
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 6.9e-10 66.6 50 64.0
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 6.9e-10 66.6 50 66.0
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 9.1e-10 66.2 50 62.0
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 9.1e-10 66.2 50 60.0
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 9.1e-10 66.2 50 58.0
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 1.2e-09 65.9 44 68.2
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.2e-09 65.9 50 58.0
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.2e-09 65.9 50 58.0
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.5e-09 65.5 50 60.0
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 2.0e-09 65.1 50 66.0
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 2.6e-09 64.7 50 66.0
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 2.6e-09 64.7 50 66.0
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 3.4e-09 64.3 50 56.0
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 3.4e-09 64.3 50 60.0
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 3.4e-09 64.3 50 62.0
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 4.5e-09 63.9 50 68.0
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 4.5e-09 63.9 50 58.0
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 4.5e-09 63.9 49 63.3
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 4.5e-09 63.9 49 61.2
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 5.9e-09 63.5 50 64.0
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 5.9e-09 63.5 50 62.0
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 5.9e-09 63.5 50 62.0
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 7.7e-09 63.2 50 58.0
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.0e-08 62.8 50 56.0
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.0e-08 62.8 50 60.0
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.3e-08 62.4 50 62.0
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.7e-08 62.0 50 58.0
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 2.2e-08 61.6 50 54.0
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 2.2e-08 61.6 50 62.0
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 2.9e-08 61.2 50 56.0
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 2.9e-08 61.2 50 60.0
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 5.0e-08 60.5 50 54.0
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 6.5e-08 60.1 51 58.8
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 6.5e-08 60.1 50 54.0
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 2.5e-07 58.2 49 53.1
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 7.2e-07 56.6 40 65.0
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 2.1e-06 55.1 45 55.6
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 2.7e-06 54.7 49 51.0
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 6.1e-06 53.5 48 52.1


User provided reference genes

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