Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 3.5e-35 151.0 71 100.0
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 1.7e-26 122.1 65 87.7
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 7.8e-19 96.7 65 70.8
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 3.6e-16 87.8 56 75.0
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 1.1e-15 86.3 56 75.0
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.1e-15 86.3 56 75.0
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-15 86.3 56 75.0
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 4.0e-15 84.3 56 73.2
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 8.9e-15 83.2 47 83.0
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 8.9e-15 83.2 47 83.0
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 2.0e-14 82.0 47 78.7
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 2.0e-14 82.0 47 78.7
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 2.0e-14 82.0 47 80.9
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 2.0e-14 82.0 61 65.6
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 2.6e-14 81.6 61 65.6
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 2.6e-14 81.6 47 80.9
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 2.6e-14 81.6 47 80.9
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 3.4e-14 81.3 47 80.9
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 3.4e-14 81.3 47 83.0
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 4.4e-14 80.9 56 67.9
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 4.4e-14 80.9 61 63.9
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 4.4e-14 80.9 61 63.9
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 4.4e-14 80.9 61 63.9
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 4.4e-14 80.9 61 63.9
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 5.8e-14 80.5 46 80.4
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 7.5e-14 80.1 56 67.9
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 7.5e-14 80.1 61 63.9
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 7.5e-14 80.1 47 74.5
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 9.9e-14 79.7 47 76.6
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-13 79.3 56 66.1
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-13 79.3 56 66.1
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 1.3e-13 79.3 46 78.3
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.7e-13 79.0 56 67.9
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 2.2e-13 78.6 46 76.1
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 2.2e-13 78.6 47 74.5
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 2.9e-13 78.2 47 72.3
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 2.9e-13 78.2 47 76.6
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 2.9e-13 78.2 47 74.5
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 2.9e-13 78.2 56 64.3
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 2.9e-13 78.2 72 56.9
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 3.7e-13 77.8 56 62.5
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 3.7e-13 77.8 47 78.7
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 3.7e-13 77.8 56 64.3
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 4.9e-13 77.4 56 64.3
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 4.9e-13 77.4 56 64.3
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 4.9e-13 77.4 56 64.3
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 4.9e-13 77.4 56 64.3
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 4.9e-13 77.4 56 64.3
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 4.9e-13 77.4 56 64.3
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 4.9e-13 77.4 56 64.3
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 4.9e-13 77.4 46 80.4
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 4.9e-13 77.4 47 74.5
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 4.9e-13 77.4 47 74.5
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 4.9e-13 77.4 47 74.5
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 4.9e-13 77.4 47 72.3
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 6.4e-13 77.0 47 74.5
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 6.4e-13 77.0 47 74.5
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 8.3e-13 76.6 56 60.7
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 8.3e-13 76.6 46 73.9
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 8.3e-13 76.6 46 73.9
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.1e-12 76.3 47 74.5
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 1.4e-12 75.9 56 64.3
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.4e-12 75.9 56 64.3
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 1.4e-12 75.9 47 72.3
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.4e-12 75.9 47 72.3
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.4e-12 75.9 56 64.3
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 1.4e-12 75.9 47 72.3
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 3.2e-12 74.7 47 70.2
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 4.1e-12 74.3 47 72.3
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 4.1e-12 74.3 49 69.4
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 4.1e-12 74.3 46 73.9
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 5.4e-12 73.9 47 72.3
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 7.1e-12 73.6 47 66.0
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 7.1e-12 73.6 47 70.2
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 9.2e-12 73.2 46 71.7
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 9.2e-12 73.2 46 69.6
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 1.2e-11 72.8 52 67.3
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.2e-11 72.8 47 70.2
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.2e-11 72.8 47 68.1
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 1.6e-11 72.4 46 71.7
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.6e-11 72.4 47 70.2
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 3.5e-11 71.2 47 66.0
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 3.5e-11 71.2 47 66.0
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 3.5e-11 71.2 52 59.6
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 4.6e-11 70.9 52 65.4
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 4.6e-11 70.9 47 68.1
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 4.6e-11 70.9 47 68.1
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 1.0e-10 69.7 47 61.7
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.0e-10 69.7 47 66.0
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 1.3e-10 69.3 47 68.1
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 1.7e-10 68.9 46 73.9
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.7e-10 68.9 55 56.4
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 3.0e-10 68.2 47 63.8
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 3.0e-10 68.2 47 63.8
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 3.9e-10 67.8 52 57.7
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 6.6e-10 67.0 47 66.0
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.5e-09 65.9 63 54.0
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 3.3e-09 64.7 46 65.2
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 5.6e-09 63.9 55 52.7
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 4.7e-08 60.8 56 46.4
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 6.2e-08 60.5 33 81.8
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 4.4e-06 54.3 61 45.9
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 5.8e-06 53.9 50 50.0


User provided reference genes

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