Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 8.2e-61 236.9 120 100.0
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 9.1e-36 153.7 80 93.8
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 1.2e-35 153.3 113 73.5
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 3.5e-35 151.8 80 91.2
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 7.7e-35 150.6 80 92.5
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 3.8e-34 148.3 80 90.0
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 7.2e-33 144.1 75 93.3
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 8.0e-32 140.6 80 85.0
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 8.0e-32 140.6 80 85.0
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.0e-31 138.7 74 91.9
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.8e-28 129.4 80 75.0
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 3.1e-28 128.6 81 76.5
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 7.0e-28 127.5 80 76.2
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.6e-27 126.3 68 91.2
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.0e-27 125.9 80 75.0
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 2.6e-27 125.6 80 72.5
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 4.5e-27 124.8 80 75.0
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 7.7e-27 124.0 79 75.9
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 7.7e-27 124.0 80 71.2
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 7.7e-27 124.0 80 70.0
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.0e-26 123.6 80 72.5
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.3e-26 123.2 79 72.2
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 1.7e-26 122.9 80 70.0
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 1.7e-26 122.9 80 67.5
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 1.7e-26 122.9 80 67.5
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.7e-26 122.9 91 69.2
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.7e-26 122.9 91 68.1
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.7e-26 122.9 80 71.2
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.7e-26 122.9 80 71.2
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 2.2e-26 122.5 80 67.5
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 2.2e-26 122.5 80 67.5
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 2.2e-26 122.5 80 67.5
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 2.2e-26 122.5 80 67.5
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 2.2e-26 122.5 80 71.2
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 2.9e-26 122.1 79 73.4
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 2.9e-26 122.1 91 68.1
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 2.9e-26 122.1 79 72.2
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 3.8e-26 121.7 80 67.5
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 3.8e-26 121.7 80 71.2
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 3.8e-26 121.7 80 73.8
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 3.8e-26 121.7 80 68.8
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 5.0e-26 121.3 80 66.2
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 5.0e-26 121.3 80 66.2
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 5.0e-26 121.3 80 72.5
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 5.0e-26 121.3 80 70.0
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 5.0e-26 121.3 79 73.4
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 5.0e-26 121.3 91 67.0
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 5.0e-26 121.3 80 67.5
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 6.5e-26 120.9 80 68.8
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 6.5e-26 120.9 80 68.8
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 6.5e-26 120.9 81 65.4
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 6.5e-26 120.9 91 67.0
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 8.5e-26 120.6 79 73.4
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 8.5e-26 120.6 85 68.2
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 8.5e-26 120.6 80 67.5
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.1e-25 120.2 80 71.2
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 1.1e-25 120.2 80 73.8
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.5e-25 119.8 81 66.7
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.5e-25 119.8 91 65.9
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 1.5e-25 119.8 79 72.2
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 1.9e-25 119.4 92 62.0
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 1.9e-25 119.4 80 71.2
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 2.5e-25 119.0 80 66.2
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 3.2e-25 118.6 80 68.8
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 3.2e-25 118.6 80 65.0
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 3.2e-25 118.6 80 66.2
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 3.2e-25 118.6 80 71.2
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 3.2e-25 118.6 80 67.5
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 4.2e-25 118.2 80 67.5
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 4.2e-25 118.2 91 65.9
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 4.2e-25 118.2 80 68.8
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 4.2e-25 118.2 80 70.0
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 5.5e-25 117.9 82 68.3
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 7.2e-25 117.5 80 68.8
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.2e-24 116.7 80 70.0
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 1.2e-24 116.7 80 67.5
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.6e-24 116.3 80 67.5
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.6e-24 116.3 80 68.8
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.6e-24 116.3 80 67.5
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 1.6e-24 116.3 80 67.5
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.6e-24 116.3 80 68.8
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 2.1e-24 115.9 80 63.8
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 2.7e-24 115.5 80 65.0
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 3.6e-24 115.2 80 65.0
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 4.7e-24 114.8 79 65.8
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 6.1e-24 114.4 79 63.3
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 6.1e-24 114.4 80 66.2
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 8.0e-24 114.0 79 64.6
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 1.4e-23 113.2 80 65.0
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.4e-23 113.2 79 63.3
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 4.0e-23 111.7 80 66.2
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.2e-22 110.2 80 62.5
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.2e-22 110.2 104 58.7
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 2.0e-22 109.4 118 52.5
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 2.0e-22 109.4 79 64.6
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.2e-19 100.1 79 57.0
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 1.6e-19 99.8 69 60.9
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 5.9e-19 97.8 100 48.0
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 5.0e-18 94.7 69 65.2
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.9e-17 92.8 66 65.2
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 2.5e-17 92.4 80 53.8
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 8.0e-16 87.4 65 72.3
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.0e-15 87.0 80 51.2
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 1.4e-15 86.7 80 47.5
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 1.8e-15 86.3 50 86.0
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 6.3e-13 77.8 101 44.6
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 1.8e-12 76.3 97 43.3
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 4.1e-12 75.1 50 66.0
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.2e-11 73.6 55 60.0
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.6e-11 73.2 55 61.8
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.6e-11 73.2 55 61.8
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 1.7e-10 69.7 55 58.2
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.6e-08 63.2 46 63.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 3.0e-07 58.9 50 52.0
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 6.8e-07 57.8 80 51.2
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 6.8e-07 57.8 107 41.1
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 4.4e-06 55.1 41 56.1


User provided reference genes

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