Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322411 Rosa chinensis HOM05D000539 ORTHO05D000592 4.0e-23 110.5 54 100.0
RcHm_v2.0_Chr5g0020841 Rosa chinensis HOM05D000539 ORTHO05D000592 1.8e-20 101.7 53 86.8
RcHm_v2.0_Chr3g0471941 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-19 98.6 53 84.9
RcHm_v2.0_Chr4g0391241 Rosa chinensis HOM05D000539 ORTHO05D000592 1.0e-18 95.9 52 84.6
RcHm_v2.0_Chr4g0401821 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-18 95.1 52 84.6
RcHm_v2.0_Chr5g0071751 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-18 94.7 53 81.1
RcHm_v2.0_Chr7g0203071 Rosa chinensis HOM05D000539 ORTHO05D000592 5.5e-17 90.1 52 78.8
FAN18G0712 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.4e-14 80.5 51 74.5
FAN23G0667 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.8e-14 79.3 52 73.1
FAN08G0188 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.3e-13 79.0 51 72.5
FAN22G0206 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.3e-13 79.0 51 72.5
FAN22G1432 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.3e-13 79.0 51 72.5
FAN28G2943 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.3e-13 79.0 51 72.5
FAN04G1435 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.9e-13 77.0 51 68.6
FvH4_3g26441 Fragaria vesca HOM05D000539 ORTHO05D000592 8.3e-13 76.3 51 70.6
RcHm_v2.0_Chr1g0316591 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-12 75.5 49 65.3
FAN18G4025 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.4e-12 73.6 51 66.7
FAN28G0205 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.2e-12 72.8 51 68.6
RcHm_v2.0_Chr7g0228381 Rosa chinensis HOM05D000539 ORTHO05D000592 9.2e-12 72.8 47 63.8
RcHm_v2.0_Chr2g0164701 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-11 72.0 52 59.6
FAN24G0755 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.5e-11 70.9 51 64.7
FvH4_5g25800 Fragaria vesca HOM05D000539 ORTHO05D000592 4.5e-11 70.5 51 64.7
FvH4_2g07145 Fragaria vesca HOM05D000539 ORTHO05D000592 2.3e-10 68.2 50 66.0
RcHm_v2.0_Chr3g0488981 Rosa chinensis HOM05D000539 ORTHO05D000592 3.3e-09 64.3 49 49.0
FAN05G1979 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-09 63.2 48 56.2
FAN05G4673 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-09 63.2 48 56.2
FAN05G5337 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-09 63.2 48 56.2
FAN06G2612 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-09 63.2 48 56.2
FAN07G2556 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-09 63.2 48 56.2
FAN09G4698 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-09 63.2 48 56.2
FAN10G3314 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-09 63.2 48 56.2
FAN23G1524 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-09 63.2 48 56.2
FAN28G2269 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-09 63.2 48 56.2
FAN28G2905 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-09 63.2 48 56.2
FvH4_3g21081 Fragaria vesca HOM05D000539 ORTHO05D000592 1.6e-08 62.0 48 54.2
FAN21G1162 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.6e-08 62.0 50 56.0
FAN14G5053 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.1e-08 61.6 48 54.2
FAN15G1357 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.1e-08 61.6 47 55.3
FAN08G0101 Fragaria x ananassa HOM05D007187 ORTHO05D009219 3.6e-08 60.8 48 54.2
FvH4_1g29808 Fragaria vesca HOM05D000539 ORTHO05D000592 4.7e-08 60.5 48 52.1
RcHm_v2.0_Chr4g0424911 Rosa chinensis HOM05D000539 ORTHO05D000592 4.7e-08 60.5 49 55.1
FvH4_6g20174 Fragaria vesca HOM05D000539 ORTHO05D000592 6.1e-08 60.1 48 52.1
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 6.1e-08 60.1 49 53.1
RcHm_v2.0_Chr2g0095661 Rosa chinensis HOM05D000539 ORTHO05D000592 6.1e-08 60.1 49 55.1
FvH4_7g02151 Fragaria vesca HOM05D000539 ORTHO05D000592 8.0e-08 59.7 48 52.1
FAN10G4183 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.0e-08 59.7 48 50.0
FAN12G0188 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.0e-08 59.7 48 52.1
FAN14G5321 Fragaria x ananassa HOM05D000539 ORTHO05D000233 8.0e-08 59.7 48 52.1
RcHm_v2.0_Chr6g0275521 Rosa chinensis HOM05D000539 ORTHO05D000592 8.0e-08 59.7 48 50.0
FAN27G0241 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.0e-07 59.3 47 51.1
FvH4_4g08650 Fragaria vesca HOM05D000539 ORTHO05D000592 1.4e-07 58.9 42 69.0
FvH4_5g24830 Fragaria vesca HOM05D000539 ORTHO05D000592 1.4e-07 58.9 48 54.2
FAN11G2856 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-07 58.9 48 52.1
FvH4_6g23071 Fragaria vesca HOM05D000539 ORTHO05D000233 1.8e-07 58.5 47 51.1
FAN09G0649 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-07 58.5 48 50.0
FAN18G0787 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-07 58.5 48 52.1
RcHm_v2.0_Chr2g0108851 Rosa chinensis HOM05D000539 ORTHO05D000592 1.8e-07 58.5 49 51.0
RcHm_v2.0_Chr5g0079561 Rosa chinensis HOM05D000539 ORTHO05D000592 1.8e-07 58.5 49 51.0
RcHm_v2.0_Chr6g0263841 Rosa chinensis HOM05D000539 ORTHO05D000592 1.8e-07 58.5 48 45.8
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 1.8e-07 58.5 49 51.0
FvH4_5g31540 Fragaria vesca HOM05D000539 ORTHO05D000592 2.3e-07 58.2 47 51.1
FAN10G2166 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.1e-07 57.8 48 47.9
RcHm_v2.0_Chr5g0023941 Rosa chinensis HOM05D000539 ORTHO05D000592 3.1e-07 57.8 49 49.0
FAN22G0531 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-07 57.4 47 48.9
FAN28G0003 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-07 57.4 47 48.9
FvH4_2g11482 Fragaria vesca HOM05D000539 ORTHO05D000592 5.2e-07 57.0 48 52.1
FvH4_4g09070 Fragaria vesca HOM05D000539 ORTHO05D000592 5.2e-07 57.0 45 53.3
FvH4_4g16177 Fragaria vesca HOM05D000539 ORTHO05D000592 6.8e-07 56.6 48 50.0
FvH4_5g19271 Fragaria vesca HOM05D000539 ORTHO05D000233 6.8e-07 56.6 48 50.0
FAN04G2790 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.9e-07 56.2 47 48.9
FAN08G0784 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.9e-07 56.2 48 47.9
RcHm_v2.0_Chr7g0197301 Rosa chinensis HOM05D000539 ORTHO05D000592 8.9e-07 56.2 48 50.0
RcHm_v2.0_Chr7g0227181 Rosa chinensis HOM05D000539 ORTHO05D000592 8.9e-07 56.2 49 51.0
FvH4_7g07222 Fragaria vesca HOM05D000539 ORTHO05D000592 1.2e-06 55.8 49 49.0
FAN13G1253 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-06 55.8 49 51.0
FvH4_5g33852 Fragaria vesca HOM05D000539 ORTHO05D000592 1.5e-06 55.5 45 53.3
RcHm_v2.0_Chr2g0095171 Rosa chinensis HOM05D000539 ORTHO05D000592 1.5e-06 55.5 48 47.9
RcHm_v2.0_Chr2g0140381 Rosa chinensis HOM05D000539 ORTHO05D000592 1.5e-06 55.5 49 49.0
FvH4_3g31624 Fragaria vesca HOM05D000539 ORTHO05D000592 2.0e-06 55.1 48 45.8
FvH4_7g07223 Fragaria vesca HOM05D000539 ORTHO05D000592 2.0e-06 55.1 48 45.8
RcHm_v2.0_Chr7g0209041 Rosa chinensis HOM05D000539 ORTHO05D000592 2.0e-06 55.1 49 49.0
RcHm_v2.0_Chr3g0481131 Rosa chinensis HOM05D000539 ORTHO05D000592 2.6e-06 54.7 48 52.1
RcHm_v2.0_Chr5g0072991 Rosa chinensis HOM05D000539 ORTHO05D000592 2.6e-06 54.7 49 46.9
RcHm_v2.0_Chr7g0235441 Rosa chinensis HOM05D000539 ORTHO05D000592 2.6e-06 54.7 49 46.9
FAN02G3402 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.4e-06 54.3 48 45.8
RcHm_v2.0_Chr3g0481661 Rosa chinensis HOM05D000539 ORTHO05D000592 3.4e-06 54.3 49 53.1
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 3.4e-06 54.3 49 53.1
RcHm_v2.0_Chr3g0485231 Rosa chinensis HOM05D000539 ORTHO05D000592 3.4e-06 54.3 49 53.1
FAN10G1931 Fragaria x ananassa HOM05D002161 ORTHO05D002619 4.4e-06 53.9 48 45.8
FAN18G3704 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.4e-06 53.9 49 46.9
FAN22G0175 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.4e-06 53.9 48 50.0
RcHm_v2.0_Chr3g0495531 Rosa chinensis HOM05D000539 ORTHO05D000592 4.4e-06 53.9 49 51.0
RcHm_v2.0_Chr4g0414241 Rosa chinensis HOM05D000539 ORTHO05D000592 4.4e-06 53.9 49 51.0
RcHm_v2.0_Chr5g0072071 Rosa chinensis HOM05D000539 ORTHO05D000592 4.4e-06 53.9 49 51.0
FAN02G1901 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.5e-06 53.1 46 47.8
FAN02G2287 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.5e-06 53.1 32 71.9
FAN28G2186 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.5e-06 53.1 45 51.1
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 9.8e-06 52.8 47 51.1
RcHm_v2.0_Chr4g0393851 Rosa chinensis HOM05D000539 ORTHO05D000592 9.8e-06 52.8 50 44.0


User provided reference genes

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