Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-101 373.2 179 100.0
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 7.8e-84 313.9 181 87.8
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 4.3e-82 308.1 181 86.7
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 4.0e-80 301.6 181 84.0
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 5.3e-80 301.2 180 83.9
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 6.9e-80 300.8 180 84.4
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.0e-79 299.3 180 83.9
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 3.4e-79 298.5 181 82.3
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 1.7e-78 296.2 181 81.8
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 6.4e-78 294.3 188 79.3
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 7.1e-77 290.8 183 80.9
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 1.8e-72 276.2 181 75.1
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 9.0e-72 273.9 181 75.7
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 9.0e-72 273.9 181 75.7
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 9.0e-72 273.9 181 74.0
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 1.2e-71 273.5 181 73.5
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.6e-71 272.3 181 74.0
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 4.5e-71 271.6 181 74.6
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 9.9e-71 270.4 180 74.4
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 1.3e-70 270.0 181 74.0
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 2.9e-70 268.9 181 73.5
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 3.8e-70 268.5 181 72.9
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 4.9e-70 268.1 181 72.9
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.1e-69 266.9 181 71.8
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.9e-69 266.2 181 72.9
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 1.9e-69 266.2 181 74.0
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.4e-69 265.8 181 71.8
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.4e-69 265.8 181 70.7
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 4.2e-69 265.0 181 70.2
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 4.2e-69 265.0 181 70.2
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 5.4e-69 264.6 181 72.4
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 9.3e-69 263.8 178 70.2
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 9.3e-69 263.8 181 71.8
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 9.3e-69 263.8 181 71.8
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 9.3e-69 263.8 181 71.8
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 1.6e-68 263.1 181 74.6
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.6e-68 263.1 181 70.7
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.1e-68 262.7 181 71.8
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 2.7e-68 262.3 186 71.0
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 2.7e-68 262.3 186 71.0
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 4.6e-68 261.5 181 71.3
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 4.6e-68 261.5 181 70.7
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 6.0e-68 261.2 181 72.9
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.0e-67 260.4 181 69.6
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.8e-67 259.6 181 72.4
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.8e-67 259.6 181 71.3
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 2.3e-67 259.2 179 69.8
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 5.1e-67 258.1 181 71.8
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 6.7e-67 257.7 181 68.0
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.7e-67 257.7 181 70.7
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 6.7e-67 257.7 180 70.6
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.5e-66 256.5 181 69.6
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 1.5e-66 256.5 181 69.6
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.5e-66 256.5 181 70.2
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.5e-66 255.8 177 70.1
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 2.5e-66 255.8 181 68.5
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.3e-66 255.4 181 69.6
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 1.6e-65 253.1 167 73.7
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 1.6e-65 253.1 181 70.7
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 2.1e-65 252.7 181 68.0
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 2.1e-65 252.7 180 70.0
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 2.1e-65 252.7 181 69.1
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 2.8e-65 252.3 181 67.4
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 2.8e-65 252.3 180 68.3
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 4.8e-65 251.5 181 68.0
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.8e-65 251.5 181 66.9
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 4.8e-65 251.5 181 69.6
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 6.2e-65 251.1 181 66.9
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 6.2e-65 251.1 181 68.5
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 1.1e-64 250.4 181 69.1
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 1.1e-64 250.4 181 67.4
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 1.4e-64 250.0 181 66.9
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 3.1e-64 248.8 186 67.2
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 4.0e-64 248.4 181 68.5
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 5.3e-64 248.1 178 67.4
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 6.9e-64 247.7 181 69.1
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 9.0e-64 247.3 181 66.3
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 9.0e-64 247.3 186 65.6
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 9.0e-64 247.3 178 66.3
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 1.2e-63 246.9 177 67.2
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 1.5e-63 246.5 181 68.5
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.0e-63 246.1 181 65.7
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.0e-63 246.1 147 84.4
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 3.4e-63 245.4 225 56.4
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 4.5e-63 245.0 181 66.9
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.3e-62 243.4 178 67.4
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 3.8e-62 241.9 181 66.3
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.9e-61 239.6 181 65.7
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 1.9e-61 239.6 181 66.3
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 2.5e-61 239.2 187 64.2
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 3.2e-61 238.8 181 65.7
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 3.2e-61 238.8 186 64.5
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 4.2e-61 238.4 187 63.6
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 5.5e-61 238.0 180 66.1
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 9.3e-61 237.3 181 65.7
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 1.6e-60 236.5 180 65.0
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 2.7e-60 235.7 169 72.2
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 4.6e-60 235.0 181 64.1
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 6.0e-60 234.6 180 64.4
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 6.0e-60 234.6 181 64.6
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 1.0e-59 233.8 181 63.0
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 3.0e-59 232.3 180 63.9
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 5.1e-59 231.5 205 58.0
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 1.5e-58 229.9 179 64.2
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 2.5e-58 229.2 179 64.2
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 9.6e-58 227.3 181 66.3
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 3.1e-56 222.2 178 62.4
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 5.3e-56 221.5 181 60.2
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.2e-55 220.3 194 59.8
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.0e-54 217.2 178 59.6
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 9.3e-53 210.7 181 60.2
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 7.9e-52 207.6 140 71.4
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 8.7e-51 204.1 181 60.8
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.9e-50 203.0 135 71.1
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.9e-45 186.4 133 66.9
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.5e-45 186.0 163 58.9
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 3.0e-43 179.1 137 65.0
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 3.9e-43 178.7 178 47.8
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 4.3e-42 175.3 174 54.0
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 4.1e-40 168.7 176 48.9
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 7.2e-37 157.9 176 48.9
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.3e-35 152.9 107 71.0
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.6e-34 149.4 175 44.0
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 1.5e-21 107.1 90 57.8
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 8.8e-19 97.8 72 63.9
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 5.7e-18 95.1 88 54.5
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 5.4e-16 88.6 63 66.7
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.2e-13 79.3 46 73.9
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.4e-08 63.2 55 50.9


User provided reference genes

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