Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 5.6e-62 240.7 118 100.0
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 1.2e-51 206.5 105 96.2
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 6.4e-50 200.7 105 95.2
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 1.6e-48 196.1 104 92.3
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 2.7e-48 195.3 105 91.4
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 8.1e-45 183.7 99 90.9
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 8.1e-45 183.7 105 84.8
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.3e-44 182.2 99 90.9
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 4.0e-44 181.4 105 82.9
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 4.4e-43 177.9 105 81.0
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 9.2e-41 170.2 109 79.8
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 3.0e-39 165.2 105 73.3
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 8.6e-39 163.7 102 74.5
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 8.6e-39 163.7 102 74.5
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.5e-38 162.2 108 69.4
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 3.3e-38 161.8 105 75.2
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 3.3e-38 161.8 105 70.5
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 3.3e-38 161.8 105 75.2
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 4.3e-38 161.4 108 71.3
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 7.3e-38 160.6 106 71.7
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 7.3e-38 160.6 106 71.7
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 7.3e-38 160.6 103 73.8
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.2e-37 159.8 111 69.4
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.2e-37 159.8 102 72.5
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 1.2e-37 159.8 103 71.8
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.2e-37 159.8 108 68.5
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 2.1e-37 159.1 102 72.5
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.8e-37 158.7 102 72.5
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 3.6e-37 158.3 108 72.2
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 3.6e-37 158.3 103 69.9
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 3.6e-37 158.3 103 71.8
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 8.1e-37 157.1 99 74.7
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 8.1e-37 157.1 109 68.8
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 8.1e-37 157.1 103 72.8
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 1.4e-36 156.4 103 69.9
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.8e-36 156.0 103 69.9
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 2.3e-36 155.6 103 70.9
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 4.0e-36 154.8 101 70.3
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 5.2e-36 154.5 105 67.6
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 8.9e-36 153.7 105 69.5
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 8.9e-36 153.7 108 69.4
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 4.4e-35 151.4 101 69.3
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 5.8e-35 151.0 101 69.3
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 5.8e-35 151.0 102 70.6
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 7.6e-35 150.6 102 68.6
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 7.6e-35 150.6 105 68.6
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 7.6e-35 150.6 105 68.6
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 2.2e-34 149.1 97 70.1
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.9e-34 148.7 102 67.6
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 3.8e-34 148.3 112 64.3
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 8.4e-34 147.1 102 67.6
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.1e-33 146.7 108 65.7
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 1.4e-33 146.4 103 67.0
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 1.4e-33 146.4 100 68.0
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 1.4e-33 146.4 105 65.7
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 1.4e-33 146.4 103 66.0
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 1.9e-33 146.0 106 63.2
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 2.4e-33 145.6 102 66.7
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 4.1e-33 144.8 113 61.1
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 4.1e-33 144.8 108 63.9
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 4.1e-33 144.8 104 64.4
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 5.4e-33 144.4 108 65.7
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 7.1e-33 144.1 112 60.7
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 7.1e-33 144.1 112 61.6
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 7.1e-33 144.1 106 62.3
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 9.2e-33 143.7 107 64.5
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 9.2e-33 143.7 112 61.6
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 1.2e-32 143.3 110 61.8
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.2e-32 143.3 101 65.3
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 1.2e-32 143.3 103 63.1
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 1.6e-32 142.9 112 61.6
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 1.6e-32 142.9 108 65.7
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 2.1e-32 142.5 105 60.0
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 2.1e-32 142.5 112 59.8
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 2.7e-32 142.1 112 60.7
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 2.7e-32 142.1 112 60.7
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 2.7e-32 142.1 103 66.0
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 2.7e-32 142.1 112 60.7
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 3.5e-32 141.7 112 60.7
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 3.5e-32 141.7 112 60.7
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 3.5e-32 141.7 108 64.8
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 4.6e-32 141.4 112 60.7
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 4.6e-32 141.4 112 60.7
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 4.6e-32 141.4 112 60.7
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 6.0e-32 141.0 107 61.7
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 6.0e-32 141.0 112 60.7
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 6.0e-32 141.0 112 59.8
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 7.8e-32 140.6 101 66.3
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 7.8e-32 140.6 102 63.7
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 7.8e-32 140.6 103 63.1
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 1.0e-31 140.2 108 61.1
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 1.3e-31 139.8 101 62.4
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.3e-31 139.8 109 60.6
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.3e-31 139.8 109 64.2
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 1.7e-31 139.4 112 60.7
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.7e-31 139.4 107 61.7
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.3e-31 139.0 107 60.7
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 3.0e-31 138.7 103 60.2
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 3.0e-31 138.7 107 60.7
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 3.0e-31 138.7 107 62.6
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 3.9e-31 138.3 112 59.8
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 8.6e-31 137.1 102 60.8
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 1.5e-30 136.3 102 60.8
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.5e-30 136.3 102 60.8
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.9e-30 136.0 98 61.2
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.9e-30 136.0 102 66.7
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 4.3e-30 134.8 102 60.8
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.7e-29 131.3 102 61.8
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.1e-28 130.2 109 56.0
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.1e-28 130.2 105 55.2
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.8e-28 129.4 105 57.1
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.8e-28 129.4 105 57.1
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.8e-28 129.4 102 62.7
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 5.2e-28 127.9 104 55.8
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 9.9e-27 123.6 104 55.8
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 2.2e-26 122.5 100 53.0
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 2.9e-26 122.1 95 63.2
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 3.8e-26 121.7 102 54.9
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 1.1e-25 120.2 103 52.4
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 1.4e-25 119.8 100 49.0
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 1.1e-20 103.6 90 54.4
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 9.9e-19 97.1 71 57.7
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 5.4e-17 91.3 77 53.2
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.2e-16 90.1 56 73.2
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 1.3e-15 86.7 68 55.9
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.7e-10 69.7 41 73.2
FAN28G0987 Fragaria x ananassa HOM05D001949 ORTHO05D010166 1.0e-07 60.5 30 90.0
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.3e-07 60.1 43 65.1


User provided reference genes

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