Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322101 Rosa chinensis HOM05D000424 ORTHO05D008586 7.1e-37 156.8 79 100.0
FvH4_4g00721 Fragaria vesca HOM05D000424 ORTHO05D000355 1.9e-26 122.1 75 78.7
Lj3P731T23 Lonicera japonica HOM05D000424 ORTHO05D000355 9.0e-16 86.7 74 52.7
TWI53G1953 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 9.9e-15 83.2 71 56.3
Oeu028579.1 Olea europaea HOM05D000424 ORTHO05D000355 2.9e-14 81.6 62 62.9
RcHm_v2.0_Chr4g0386451 Rosa chinensis HOM05D000424 ORTHO05D000355 4.9e-14 80.9 47 85.1
AL3G36970 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 1.9e-13 79.0 66 56.1
Carub.0003s2283 Capsella rubella HOM05D000424 ORTHO05D000355 1.9e-13 79.0 66 56.1
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 3.2e-13 78.2 66 56.1
AT3G22670 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 4.2e-13 77.8 66 54.5
Dinv44566 Davidia involucrata HOM05D000424 ORTHO05D000355 5.4e-13 77.4 54 70.4
Potri.010G083800 Populus trichocarpa HOM05D000424 ORTHO05D000355 1.6e-12 75.9 67 59.7
Sp3g20430 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.6e-12 75.9 66 54.5
BcaB03g14655 Brassica carinata HOM05D000424 ORTHO05D000355 2.7e-12 75.1 67 53.7
BcaC01g03431 Brassica carinata HOM05D000424 ORTHO05D000355 3.5e-12 74.7 66 54.5
A03p42890 Brassica napus HOM05D000424 ORTHO05D008586 3.5e-12 74.7 66 54.5
A03p42910 Brassica napus HOM05D000424 ORTHO05D000355 3.5e-12 74.7 66 54.5
C03p52660 Brassica napus HOM05D000424 ORTHO05D000355 3.5e-12 74.7 66 54.5
BolC3t17534H Brassica oleracea HOM05D000424 ORTHO05D000355 3.5e-12 74.7 66 54.5
BraA03t13435Z Brassica rapa HOM05D000424 ORTHO05D000355 3.5e-12 74.7 66 54.5
Nitab4.5_0000085g0350 Nicotiana tabacum HOM05D000424 ORTHO05D008586 3.5e-12 74.7 72 47.2
BcaB04g19212 Brassica carinata HOM05D000424 ORTHO05D000355 6.0e-12 73.9 66 54.5
Cc03_g04090 Coffea canephora HOM05D000424 ORTHO05D000355 7.9e-12 73.6 64 53.1
SHI00491 Sapria himalayana HOM05D000424 ORTHO05D000355 3.0e-11 71.6 71 50.7
Atru.ctg752_3.33 Acer truncatum HOM05D000424 ORTHO05D000355 6.7e-11 70.5 66 54.5
PGR129G0012 Punica granatum HOM05D000424 ORTHO05D000355 6.7e-11 70.5 57 56.1
PGR142G0651 Punica granatum HOM05D000424 ORTHO05D000355 6.7e-11 70.5 57 56.1
CSS0000084 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.1e-10 69.7 55 61.8
Cfa008465 Carpinus fangiana HOM05D000424 ORTHO05D000355 1.1e-10 69.7 54 63.0
Migut.N00201 Erythranthe guttata HOM05D000424 ORTHO05D000355 1.1e-10 69.7 61 52.5
SGA_v2.0_scaffold79G25581 Striga asiatica HOM05D000424 ORTHO05D000355 1.5e-10 69.3 68 47.1
CiPaw.01G197700 Carya illinoinensis HOM05D000424 ORTHO05D000355 5.6e-10 67.4 56 58.9
TWI09G0390 Tripterygium wilfordii HOM05D000424 ORTHO05D008586 9.6e-10 66.6 56 58.9
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 1.3e-09 66.2 58 58.6
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 1.3e-09 66.2 58 58.6
Cpa.g.sc58.67 Carica papaya HOM05D000424 ORTHO05D000355 2.8e-09 65.1 53 58.5
MSTRG.21866 Avicennia marina HOM05D000424 ORTHO05D000355 6.2e-09 63.9 56 53.6
RcHm_v2.0_Chr4g0386551 Rosa chinensis HOM05D001876 ORTHO05D002002 1.8e-08 62.4 50 58.0
Duzib212G0217 Durio zibethinus HOM05D000424 ORTHO05D000355 2.4e-08 62.0 54 53.7
Thecc.04G235900 Theobroma cacao HOM05D000424 ORTHO05D000355 3.1e-08 61.6 54 53.7
CsaV3_2G032830 Cucumis sativus L. HOM05D000424 ORTHO05D000355 6.9e-08 60.5 56 58.9
THA.LOC104808562 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 6.9e-08 60.5 50 58.0
Potri.010G084000 Populus trichocarpa HOM05D000424 ORTHO05D000355 1.2e-07 59.7 55 54.5
Sed0014952 Sechium edule HOM05D000424 ORTHO05D000355 1.5e-07 59.3 54 61.1
HPP92_009614 Vanilla planifolia HOM05D000424 ORTHO05D000355 2.0e-07 58.9 55 54.5
COL.COLO4_21525 Corchorus olitorius HOM05D000424 ORTHO05D000355 2.6e-07 58.5 59 49.2
Rhsim04G0199600 Rhododendron simsii HOM05D000424 ORTHO05D000355 3.4e-07 58.2 60 51.7
SGA_v2.0_scaffold165G38283 Striga asiatica HOM05D000424 ORTHO05D000355 5.8e-07 57.4 46 60.9
CANSAT80G1535 Cannabis sativa HOM05D000424 ORTHO05D000355 1.3e-06 56.2 55 50.9
Haze_12359 Corylus avellana HOM05D000424 ORTHO05D008586 1.7e-06 55.8 63 41.3
DCAR_030676 Daucus carota HOM05D000424 ORTHO05D000355 1.7e-06 55.8 55 50.9
THA.LOC104805256 Tarenaya hassleriana HOM05D000424 ORTHO05D008586 2.2e-06 55.5 66 37.9
Aqoxy2G03436 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 2.9e-06 55.1 54 50.0
ECA236G4718 Erigeron canadensis HOM05D000424 ORTHO05D000355 2.9e-06 55.1 52 46.2
SGA_v2.0_scaffold165G38282 Striga asiatica HOM05D000424 ORTHO05D000355 2.9e-06 55.1 54 46.3
Potri.008G179201 Populus trichocarpa HOM05D000424 ORTHO05D008586 3.8e-06 54.7 66 42.4
FAN04G2222 Fragaria x ananassa HOM05D000424 ORTHO05D008586 4.9e-06 54.3 66 40.9
Glyma.16G058400 Glycine max HOM05D000424 ORTHO05D008586 4.9e-06 54.3 66 39.4
PGR119G1668 Punica granatum HOM05D000424 ORTHO05D008586 6.4e-06 53.9 70 37.1
FvH4_5g29890 Fragaria vesca HOM05D000424 ORTHO05D008586 8.4e-06 53.5 70 40.0
Lalb_Chr12g0210351 Lupinus albus HOM05D000424 ORTHO05D008586 8.4e-06 53.5 66 40.9
VMungo1215G2887 Vigna mungo HOM05D000879 ORTHO05D002043 8.4e-06 53.5 66 39.4


User provided reference genes

Program Settings