Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 4.1e-84 314.7 158 100.0
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 8.8e-39 164.1 86 90.7
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 3.7e-37 158.7 113 69.9
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 1.1e-36 157.1 86 86.0
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.4e-36 156.8 82 89.0
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 1.5e-33 146.7 81 80.2
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 1.9e-33 146.4 81 80.2
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 1.0e-31 140.6 82 75.6
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 4.0e-31 138.7 82 75.6
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 5.7e-30 134.8 82 75.6
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 5.7e-30 134.8 80 73.8
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 4.9e-29 131.7 82 72.0
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 2.4e-28 129.4 84 70.2
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 3.2e-28 129.0 84 71.4
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 5.4e-28 128.3 84 70.2
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 9.2e-28 127.5 83 73.5
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.2e-27 127.1 84 70.2
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 2.0e-27 126.3 88 65.9
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 2.0e-27 126.3 84 66.7
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 2.7e-27 125.9 84 70.2
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.5e-27 125.6 84 69.0
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 4.6e-27 125.2 84 67.9
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.0e-26 124.0 84 67.9
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.3e-26 123.6 84 67.9
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 1.3e-26 123.6 82 69.5
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.7e-26 123.2 84 67.9
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.7e-26 123.2 84 67.9
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.7e-26 123.2 84 67.9
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 2.3e-26 122.9 82 67.1
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 2.3e-26 122.9 84 69.0
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.3e-26 122.9 84 69.0
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 3.0e-26 122.5 82 70.7
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 5.0e-26 121.7 82 67.1
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 5.0e-26 121.7 82 67.1
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 6.6e-26 121.3 82 70.7
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 6.6e-26 121.3 82 67.1
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 8.6e-26 120.9 88 63.6
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 8.6e-26 120.9 84 66.7
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 1.9e-25 119.8 82 69.5
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 2.5e-25 119.4 82 69.5
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 2.5e-25 119.4 82 68.3
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 2.5e-25 119.4 82 69.5
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 3.3e-25 119.0 82 67.1
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 2.1e-24 116.3 82 63.4
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 3.6e-24 115.5 82 63.4
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 3.6e-24 115.5 83 67.5
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 4.7e-24 115.2 82 67.1
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 1.8e-23 113.2 70 72.9
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 4.0e-23 112.1 83 61.4
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 4.0e-23 112.1 82 61.0
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 4.0e-23 112.1 83 65.1
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 6.8e-23 111.3 70 72.9
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 1.2e-22 110.5 86 58.1
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 2.6e-22 109.4 82 61.0
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 7.5e-22 107.8 82 62.2
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 7.5e-22 107.8 82 57.3
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 1.7e-21 106.7 84 60.7
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 2.2e-21 106.3 86 58.1
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 2.9e-21 105.9 90 55.6
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 1.1e-20 104.0 86 54.7
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 1.9e-20 103.2 82 59.8
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 2.4e-20 102.8 81 58.0
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 2.4e-20 102.8 88 58.0
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 2.4e-20 102.8 86 55.8
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 3.2e-20 102.4 82 57.3
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 3.2e-20 102.4 87 58.6
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 5.4e-20 101.7 85 60.0
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 5.4e-20 101.7 81 58.0
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 7.0e-20 101.3 82 57.3
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 9.2e-20 100.9 118 46.6
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 9.2e-20 100.9 85 55.3
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 9.2e-20 100.9 82 58.5
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 9.2e-20 100.9 86 54.7
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 9.2e-20 100.9 74 59.5
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.2e-19 100.5 82 57.3
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 2.0e-19 99.8 86 55.8
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 2.0e-19 99.8 82 54.9
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 3.5e-19 99.0 59 76.3
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 3.5e-19 99.0 72 63.9
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 6.0e-19 98.2 64 70.3
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 7.8e-19 97.8 65 69.2
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 1.3e-18 97.1 70 62.9
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.3e-18 97.1 72 65.3
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 2.3e-18 96.3 80 53.8
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.0e-18 95.9 72 61.1
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 3.0e-18 95.9 72 61.1
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 3.9e-18 95.5 83 53.0
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 5.0e-18 95.1 72 61.1
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 6.6e-18 94.7 86 53.5
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.9e-17 93.2 74 56.8
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 4.3e-17 92.0 70 58.6
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 9.5e-17 90.9 73 57.5
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 1.6e-16 90.1 68 60.3
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 3.6e-16 89.0 70 57.1
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 4.7e-16 88.6 88 53.4
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 1.1e-15 87.4 76 52.6
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.4e-15 87.0 70 54.3
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.8e-15 86.7 71 56.3
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 2.3e-15 86.3 58 69.0
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 3.1e-15 85.9 71 60.6
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 4.0e-15 85.5 70 52.9
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.5e-14 83.6 70 55.7
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 7.5e-14 81.3 93 43.0
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.7e-13 80.1 86 47.7
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 1.7e-13 80.1 64 56.2
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 2.2e-13 79.7 64 56.2
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 2.2e-13 79.7 64 56.2
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 2.2e-13 79.7 64 56.2
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 2.2e-13 79.7 64 56.2
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 2.9e-13 79.3 83 49.4
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 2.9e-13 79.3 95 42.1
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 3.7e-13 79.0 64 56.2
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 3.7e-13 79.0 64 56.2
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 8.3e-13 77.8 63 54.0
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 1.9e-12 76.6 93 39.8
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 1.9e-12 76.6 64 53.1
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 3.2e-12 75.9 68 57.4
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 3.2e-12 75.9 93 41.9
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 3.2e-12 75.9 71 53.5
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 4.1e-12 75.5 87 46.0
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 2.7e-11 72.8 59 54.2
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 7.8e-11 71.2 58 62.1
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 1.1e-09 67.4 51 60.8
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 7.3e-09 64.7 53 56.6
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 4.7e-08 62.0 53 54.7
RcHm_v2.0_Chr1g0326231 Rosa chinensis HOM05D005781 ORTHO05D006835 8.1e-08 61.2 58 50.0
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 6.8e-07 58.2 55 52.7
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 2.0e-06 56.6 53 47.2
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 9.9e-06 54.3 52 46.2
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 9.9e-06 54.3 52 46.2


User provided reference genes

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