Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322081 Rosa chinensis HOM05D002832 ORTHO05D008667 8.8e-63 243.4 121 100.0
RcHm_v2.0_Chr3g0455731 Rosa chinensis HOM05D002832 ORTHO05D008667 6.5e-50 200.7 116 87.1
FvH4_6g06570 Fragaria vesca HOM05D002832 ORTHO05D008667 7.2e-49 197.2 116 87.1
FAN14G1300 Fragaria x ananassa HOM05D002832 ORTHO05D008667 7.2e-49 197.2 116 87.1
FAN09G4081 Fragaria x ananassa HOM05D002832 ORTHO05D008667 4.7e-48 194.5 116 85.3
RcHm_v2.0_Chr1g0322141 Rosa chinensis HOM05D002832 ORTHO05D008667 1.8e-47 192.6 116 84.5
MD04G1200600 Malus domestica HOM05D002832 ORTHO05D008667 9.1e-44 180.3 117 78.6
MD12G1213100 Malus domestica HOM05D002832 ORTHO05D008667 1.6e-43 179.5 117 79.5
Prupe.6G320700 Prunus persica HOM05D002832 ORTHO05D008667 1.0e-42 176.8 117 76.9
CANSAT54G0675 Cannabis sativa HOM05D002832 ORTHO05D008667 1.1e-36 156.8 116 67.2
PGR083G0155 Punica granatum HOM05D002832 ORTHO05D008667 8.6e-34 147.1 116 63.8
Manes.08G117500 Manihot esculenta HOM05D002832 ORTHO05D008667 3.3e-33 145.2 116 62.1
CiPaw.07G021400 Carya illinoinensis HOM05D002832 ORTHO05D008667 5.6e-33 144.4 112 66.1
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 2.1e-32 142.5 111 64.9
TWI36G1782 Tripterygium wilfordii HOM05D002832 ORTHO05D008667 3.6e-32 141.7 116 63.8
Thecc.05G313000 Theobroma cacao HOM05D002832 ORTHO05D008667 4.7e-32 141.4 117 61.5
COL.COLO4_10519 Corchorus olitorius HOM05D002832 ORTHO05D008667 1.0e-31 140.2 117 59.8
Psat0s27g0040 Pisum sativum HOM05D002832 ORTHO05D008667 1.4e-31 139.8 117 58.1
TPR.G33230 Trifolium pratense HOM05D002832 ORTHO05D008667 2.3e-31 139.0 117 59.8
Eucgr.B01913 Eucalyptus grandis HOM05D002832 ORTHO05D008667 8.9e-31 137.1 115 61.7
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 8.9e-31 137.1 117 58.1
Glyma.03G235600 Glycine max HOM05D002832 ORTHO05D008667 1.5e-30 136.3 117 59.0
Cfa006629 Carpinus fangiana HOM05D002832 ORTHO05D008667 3.4e-30 135.2 117 61.5
Ca_05799_v3 Cicer arietinum L. HOM05D002832 ORTHO05D008667 3.4e-30 135.2 117 58.1
Haze_04139 Corylus avellana HOM05D002832 ORTHO05D008667 3.4e-30 135.2 117 61.5
Dinv40338 Davidia involucrata HOM05D002832 ORTHO05D008667 4.4e-30 134.8 111 61.3
Gohir.A13G109400 Gossypium hirsutum HOM05D002832 ORTHO05D008667 5.7e-30 134.4 117 59.0
Gohir.D13G112100 Gossypium hirsutum HOM05D002832 ORTHO05D008667 5.7e-30 134.4 117 59.0
Gorai.013G125800 Gossypium raimondii HOM05D002832 ORTHO05D008667 5.7e-30 134.4 117 59.0
arahy.Tifrunner.gnm1.ann1.NSA13U Arachis hypogaea HOM05D002832 ORTHO05D008667 7.5e-30 134.0 115 60.0
Medtr7g112680 Medicago truncatula HOM05D002832 ORTHO05D008667 7.5e-30 134.0 117 59.0
VMungo0540G0719 Vigna mungo HOM05D002832 ORTHO05D008667 7.5e-30 134.0 117 58.1
Potri.005G025400 Populus trichocarpa HOM05D002832 ORTHO05D008667 9.8e-30 133.7 121 59.5
Sabra05G0030900 Salix brachista HOM05D002832 ORTHO05D008667 1.3e-29 133.3 121 58.7
CsaV3_1G038830 Cucumis sativus L. HOM05D002832 ORTHO05D008667 3.7e-29 131.7 116 60.3
Duzib177G0088 Durio zibethinus HOM05D002832 ORTHO05D008667 4.9e-29 131.3 117 59.8
GSVIVG01031143001 Vitis vinifera HOM05D002832 ORTHO05D008667 4.9e-29 131.3 108 63.9
Ciclev10001108m.g Citrus clementina HOM05D002832 ORTHO05D008667 8.3e-29 130.6 117 56.4
MELO3C015307.2 Cucumis melo HOM05D002832 ORTHO05D008667 8.3e-29 130.6 116 59.5
CSS0001457 Camellia sinensis var. sinensis HOM05D002832 ORTHO05D008667 1.4e-28 129.8 116 57.8
CSS0017129 Camellia sinensis var. sinensis HOM05D002832 ORTHO05D008667 1.4e-28 129.8 116 57.8
ClCG03G017130 Citrullus lanatus HOM05D002832 ORTHO05D008667 1.4e-28 129.8 116 59.5
Glyma.19G233400 Glycine max HOM05D002832 ORTHO05D008667 1.4e-28 129.8 116 58.6
Lalb_Chr15g0077341 Lupinus albus HOM05D002832 ORTHO05D008667 1.8e-28 129.4 119 57.1
Phvul.006G089600 Phaseolus vulgaris HOM05D002832 ORTHO05D008667 2.4e-28 129.0 117 55.6
Lj5A420G19 Lonicera japonica HOM05D002832 ORTHO05D008667 5.4e-28 127.9 115 58.3
vmacro04815 Vaccinium macrocarpon HOM05D002832 ORTHO05D008667 1.2e-27 126.7 117 56.4
Nitab4.5_0003658g0050 Nicotiana tabacum HOM05D002832 ORTHO05D008667 2.0e-27 125.9 112 57.1
Nitab4.5_0003844g0040 Nicotiana tabacum HOM05D002832 ORTHO05D008667 2.0e-27 125.9 112 57.1
Sed0016733 Sechium edule HOM05D002832 ORTHO05D008667 2.7e-27 125.6 116 56.0
TAR633G1988 Trochodendron aralioides HOM05D002832 ORTHO05D008667 3.5e-27 125.2 116 53.4
Atru.chr2.30 Acer truncatum HOM05D002832 ORTHO05D008667 4.6e-27 124.8 111 56.8
Sc09g0002950 Simmondsia chinensis HOM05D002832 ORTHO05D008667 1.0e-26 123.6 117 53.8
THA.LOC104818717 Tarenaya hassleriana HOM05D002832 ORTHO05D008667 1.7e-26 122.9 117 58.1
Carub.0003s0480 Capsella rubella HOM05D002832 ORTHO05D008667 6.6e-26 120.9 112 55.4
PGSC0003DMG400024711 Solanum tuberosum HOM05D002832 ORTHO05D008667 8.6e-26 120.6 112 56.2
CAN.G1459.11 Capsicum annuum HOM05D002832 ORTHO05D008667 2.5e-25 119.0 112 57.1
Solyc01g099710.4 Solanum lycopersicum HOM05D002832 ORTHO05D008667 2.5e-25 119.0 112 55.4
MSTRG.27983 Avicennia marina HOM05D002832 ORTHO05D008667 3.3e-25 118.6 117 53.8
AL3G16110 Arabidopsis lyrata HOM05D002832 ORTHO05D008667 4.3e-25 118.2 112 55.4
DCAR_022146 Daucus carota HOM05D002832 ORTHO05D008667 5.6e-25 117.9 108 55.6
Lalb_Chr18g0045771 Lupinus albus HOM05D002832 ORTHO05D008667 2.1e-24 115.9 116 54.3
Peaxi162Scf00037g01215 Petunia axillaris HOM05D002832 ORTHO05D008667 2.8e-24 115.5 118 49.2
QL03p020213 Quercus lobata HOM05D002832 ORTHO05D008667 2.8e-24 115.5 127 50.4
Sp3g04340 Schrenkiella parvula HOM05D002832 ORTHO05D008667 2.8e-24 115.5 112 56.2
Hund21711 Selenicereus undatus HOM05D002832 ORTHO05D008667 4.7e-24 114.8 113 50.4
Nn4g25828 Nelumbo nucifera HOM05D002832 ORTHO05D008667 6.2e-24 114.4 116 46.6
Aa31LG5G15880 Aethionema arabicum HOM05D002832 ORTHO05D008667 8.0e-24 114.0 117 53.0
Migut.N02083 Erythranthe guttata HOM05D002832 ORTHO05D008667 8.0e-24 114.0 112 55.4
AT3G05510 Arabidopsis thaliana HOM05D002832 ORTHO05D008667 2.3e-23 112.5 112 53.6
Aqoxy5G00732 Aquilegia oxysepala HOM05D002832 ORTHO05D008667 5.2e-23 111.3 116 50.0
EL10Ac4g09915 Beta vulgaris HOM05D002832 ORTHO05D008667 6.8e-23 110.9 122 51.6
C03p41550 Brassica napus HOM05D002832 ORTHO05D008667 6.8e-23 110.9 111 53.2
BolC3t16436H Brassica oleracea HOM05D002832 ORTHO05D008667 6.8e-23 110.9 111 53.2
BraA03t12590Z Brassica rapa HOM05D002832 ORTHO05D008667 6.8e-23 110.9 111 53.2
A03p34160 Brassica napus HOM05D002832 ORTHO05D008667 8.9e-23 110.5 111 53.2
CARHR079900 Cardamine hirsuta HOM05D002832 ORTHO05D008667 1.2e-22 110.2 112 52.7
Lsat_1_v5_gn_9_124380 Lactuca sativa HOM05D002832 ORTHO05D008667 2.0e-22 109.4 110 50.9
SGA_v2.0_scaffold196G40951 Striga asiatica HOM05D002832 ORTHO05D008667 2.6e-22 109.0 111 55.0
BcaB04g19262 Brassica carinata HOM05D002832 ORTHO05D008667 5.8e-22 107.8 135 47.4
SHI18105 Sapria himalayana HOM05D002832 ORTHO05D008667 7.5e-22 107.5 120 45.0
Oeu043345.1 Olea europaea HOM05D002832 ORTHO05D008667 3.7e-21 105.1 119 46.2
Cc02_g34140 Coffea canephora HOM05D002832 ORTHO05D008667 4.9e-21 104.8 111 51.4
PSO832G3525 Papaver somniferum HOM05D002832 ORTHO05D008667 6.4e-21 104.4 117 47.9
Ah.04g161120 Amaranthus hybridus HOM05D002832 ORTHO05D008667 2.4e-20 102.4 123 49.6
AUR62000763 Chenopodium quinoa HOM05D002832 ORTHO05D008667 2.0e-19 99.4 113 51.3
Hma1.2p1_1292F.1_g273740 Hydrangea macrophylla HOM05D002832 ORTHO05D008667 7.8e-19 97.4 144 41.7
MBI18_g46421_MAGBIO Magnolia biondii HOM05D002832 ORTHO05D008667 8.1e-16 87.4 112 42.0
ECA240G0796 Erigeron canadensis HOM05D000021 ORTHO05D008667 4.0e-15 85.1 112 41.1
HPP92_011845 Vanilla planifolia HOM05D002832 ORTHO05D008667 4.1e-12 75.1 109 39.4
ATR0796G160 Amborella trichopoda HOM05D002832 ORTHO05D008667 3.0e-10 68.9 110 38.2
CDE01G0580 Ceratophyllum demersum HOM05D002832 ORTHO05D008667 5.1e-10 68.2 80 43.8
CDE12G0923 Ceratophyllum demersum HOM05D002832 ORTHO05D008667 6.6e-10 67.8 78 41.0
Thhalv10020802m.g Eutrema salsugineum HOM05D002832 ORTHO05D008667 7.3e-09 64.3 53 56.6
Os01g0931300 Oryza sativa ssp. japonica HOM05D002832 ORTHO05D008667 2.8e-08 62.4 130 36.2
AUR62005206 Chenopodium quinoa HOM05D002832 ORTHO05D008667 3.6e-08 62.0 39 74.4
unitig_0.g2314 Utricularia gibba HOM05D002832 ORTHO05D008667 1.1e-07 60.5 41 63.4


User provided reference genes

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