Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 2.5e-77 292.0 143 100.0
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 1.5e-61 239.6 126 93.7
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 1.1e-59 233.4 126 90.5
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.1e-56 223.4 138 77.5
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 3.2e-56 221.9 155 74.2
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 4.2e-56 221.5 126 84.9
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 1.2e-55 219.9 138 76.1
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 4.7e-55 218.0 126 86.5
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.4e-54 216.5 126 86.5
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 1.8e-51 206.1 105 96.2
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 1.2e-50 203.4 126 74.6
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 1.0e-49 200.3 138 71.0
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.7e-49 199.5 135 68.9
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.2e-49 199.1 124 75.0
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.9e-49 198.7 123 74.8
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.9e-49 198.7 123 74.8
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 3.8e-49 198.4 138 70.3
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 5.0e-49 198.0 127 73.2
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 5.0e-49 198.0 127 73.2
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 6.5e-49 197.6 138 68.1
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 6.5e-49 197.6 126 72.2
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 6.5e-49 197.6 124 75.8
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 8.5e-49 197.2 124 72.6
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.1e-48 196.8 136 76.5
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.1e-48 196.8 126 72.2
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 1.1e-48 196.8 142 66.2
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.5e-48 196.4 135 68.9
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.5e-48 195.7 141 68.1
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 3.2e-48 195.3 141 66.0
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 3.2e-48 195.3 124 73.4
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 3.2e-48 195.3 129 71.3
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 5.5e-48 194.5 126 71.4
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 5.5e-48 194.5 120 75.8
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 7.2e-48 194.1 124 72.6
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 9.4e-48 193.7 123 72.4
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.2e-47 193.4 126 73.0
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 1.6e-47 193.0 124 72.6
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 3.6e-47 191.8 126 70.6
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 4.7e-47 191.4 131 71.8
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 4.7e-47 191.4 124 74.2
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 4.7e-47 191.4 134 66.4
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 8.0e-47 190.7 134 66.4
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 8.8e-46 187.2 123 69.9
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 8.8e-46 187.2 118 72.9
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.2e-45 186.8 127 69.3
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 1.2e-45 186.8 126 71.4
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.2e-45 186.8 126 71.4
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 2.6e-45 185.7 123 70.7
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 5.7e-45 184.5 122 71.3
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.7e-44 183.0 129 68.2
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 1.7e-44 183.0 129 66.7
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 2.2e-44 182.6 130 67.7
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 2.2e-44 182.6 124 70.2
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.2e-44 182.6 126 67.5
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.8e-44 182.2 123 69.1
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 3.7e-44 181.8 140 62.1
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 8.3e-44 180.6 123 69.1
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.1e-43 180.3 129 67.4
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 1.8e-43 179.5 140 62.9
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 2.4e-43 179.1 134 61.9
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 2.4e-43 179.1 123 68.3
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 4.1e-43 178.3 131 64.9
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 4.1e-43 178.3 138 63.8
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 4.1e-43 178.3 123 67.5
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 4.1e-43 178.3 139 59.7
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 4.1e-43 178.3 130 64.6
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 5.4e-43 177.9 134 64.2
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 5.4e-43 177.9 140 61.4
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 7.0e-43 177.6 130 64.6
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 7.0e-43 177.6 129 66.7
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 7.0e-43 177.6 125 67.2
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 7.0e-43 177.6 136 61.0
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 7.0e-43 177.6 130 66.2
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.6e-42 176.4 139 59.0
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 1.6e-42 176.4 130 64.6
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 2.0e-42 176.0 129 64.3
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 2.0e-42 176.0 129 64.3
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 2.0e-42 176.0 126 61.9
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 2.7e-42 175.6 130 64.6
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 2.7e-42 175.6 130 64.6
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 2.7e-42 175.6 130 64.6
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 3.5e-42 175.3 130 64.6
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 4.5e-42 174.9 130 63.1
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 4.5e-42 174.9 130 63.1
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 5.9e-42 174.5 130 63.1
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 7.7e-42 174.1 124 63.7
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.7e-42 174.1 142 61.3
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 1.0e-41 173.7 123 65.0
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.3e-41 173.3 135 63.7
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 1.7e-41 172.9 122 63.1
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 1.7e-41 172.9 123 65.0
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.7e-41 172.9 123 65.0
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.3e-41 172.6 133 61.7
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 2.9e-41 172.2 130 62.3
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 3.8e-41 171.8 130 62.3
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 5.0e-41 171.4 123 64.2
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 6.5e-41 171.0 130 63.1
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 6.5e-41 171.0 130 63.1
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 8.6e-41 170.6 130 63.1
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-40 170.2 130 62.3
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.1e-40 170.2 119 63.9
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 1.9e-40 169.5 123 63.4
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 1.9e-40 169.5 162 53.7
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.5e-40 169.1 133 60.9
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 7.2e-40 167.5 130 62.3
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 4.7e-39 164.9 131 58.0
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 8.0e-39 164.1 127 59.1
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 8.0e-39 164.1 127 59.1
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 3.4e-37 158.7 129 58.1
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 4.4e-37 158.3 137 54.0
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 7.5e-37 157.5 129 56.6
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.3e-36 156.8 118 58.5
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 1.7e-36 156.4 125 59.2
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 8.3e-36 154.1 118 55.1
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 4.5e-34 148.3 210 40.5
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.3e-33 146.0 101 66.3
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 3.0e-30 135.6 129 54.3
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 1.5e-29 133.3 117 57.3
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.0e-29 132.9 102 62.7
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.5e-29 131.0 102 63.7
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 7.5e-29 131.0 125 52.0
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.0e-26 122.9 89 62.9
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 9.5e-24 114.0 89 58.4
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.9e-20 101.7 59 76.3
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.2e-18 97.1 105 43.8
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 1.3e-17 93.6 77 54.5
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.3e-17 92.8 64 70.3
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.8e-15 85.9 104 44.2
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 1.1e-08 63.9 42 66.7
FAN28G0987 Fragaria x ananassa HOM05D001949 ORTHO05D010166 1.6e-07 60.1 35 77.1


User provided reference genes

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