Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0321821 Rosa chinensis HOM05D006441 ORTHO05D008203 1.9e-86 322.4 158 100.0
RcHm_v2.0_Chr2g0109051 Rosa chinensis HOM05D006441 ORTHO05D008203 3.2e-65 251.9 134 94.8
FAN23G0818 Fragaria x ananassa HOM05D006441 ORTHO05D008203 5.9e-59 231.1 134 87.3
FvH4_1g18350 Fragaria vesca HOM05D006441 ORTHO05D008203 1.3e-58 229.9 134 86.6
FAN19G0231 Fragaria x ananassa HOM05D006441 ORTHO05D008203 1.7e-58 229.6 134 86.6
FAN26G0165 Fragaria x ananassa HOM05D006441 ORTHO05D008203 6.5e-58 227.6 134 85.8
Prupe.6G215400 Prunus persica HOM05D006441 ORTHO05D008203 7.5e-38 161.0 134 62.7
MD02G1190600 Malus domestica HOM05D006441 ORTHO05D008203 1.5e-30 136.7 136 57.4
CiPaw.07G037200 Carya illinoinensis HOM05D007830 ORTHO05D009947 7.5e-30 134.4 141 56.7
CANSAT01G2205 Cannabis sativa HOM05D006441 ORTHO05D008203 1.7e-29 133.3 131 57.3
Manes.12G118300 Manihot esculenta HOM05D006441 ORTHO05D008203 6.4e-29 131.3 124 59.7
Duzib147G0493 Durio zibethinus HOM05D006441 ORTHO05D008203 8.3e-29 131.0 134 58.2
ClCG07G009760 Citrullus lanatus HOM05D006441 ORTHO05D008203 1.4e-28 130.2 135 54.8
Cfa006781 Carpinus fangiana HOM05D006441 ORTHO05D008203 3.2e-28 129.0 145 51.7
GSVIVG01002450001 Vitis vinifera HOM05D006441 ORTHO05D008203 7.0e-28 127.9 146 50.0
Haze_03978 Corylus avellana HOM05D006441 ORTHO05D008203 1.6e-27 126.7 146 52.7
Potri.007G007700 Populus trichocarpa HOM05D006441 ORTHO05D008203 2.7e-27 125.9 99 60.6
COL.COLO4_11626 Corchorus olitorius HOM05D006441 ORTHO05D008203 3.5e-27 125.6 129 55.0
Thecc.01G077600 Theobroma cacao HOM05D006441 ORTHO05D008203 4.6e-27 125.2 132 54.5
MELO3C024853.2 Cucumis melo HOM05D006441 ORTHO05D008203 7.8e-27 124.4 136 53.7
Sabra07G0005900 Salix brachista HOM05D006441 ORTHO05D008203 4.3e-25 118.6 99 59.6
CiPaw.07G037300 Carya illinoinensis HOM05D006441 ORTHO05D008203 1.2e-24 117.1 141 52.5
THA.LOC104821215 Tarenaya hassleriana HOM05D006441 ORTHO05D008203 1.2e-24 117.1 129 48.8
CsaV3_4G008510 Cucumis sativus L. HOM05D006441 ORTHO05D008203 1.6e-24 116.7 136 52.9
Gorai.007G227000 Gossypium raimondii HOM05D006441 ORTHO05D008203 3.6e-24 115.5 129 51.2
Gohir.D11G211300 Gossypium hirsutum HOM05D006441 ORTHO05D008203 6.2e-24 114.8 129 51.2
Gohir.A11G211600 Gossypium hirsutum HOM05D006441 ORTHO05D008203 2.3e-23 112.8 129 51.2
PGR102G2456 Punica granatum HOM05D006441 ORTHO05D008203 2.3e-23 112.8 99 60.6
CSS0036817 Camellia sinensis var. sinensis HOM05D006441 ORTHO05D008203 3.1e-23 112.5 152 50.7
Ciclev10025205m.g Citrus clementina HOM05D006441 ORTHO05D008203 3.1e-23 112.5 83 63.9
Nn6g34544 Nelumbo nucifera HOM05D006441 ORTHO05D008203 8.9e-23 110.9 144 45.8
Sed0000343 Sechium edule HOM05D006441 ORTHO05D008203 2.6e-22 109.4 136 50.0
CDE07G0466 Ceratophyllum demersum HOM05D006441 ORTHO05D008203 5.8e-22 108.2 135 48.1
QL06p038630 Quercus lobata HOM05D006441 ORTHO05D008203 1.7e-21 106.7 73 68.5
Atru.chr3.1073 Acer truncatum HOM05D006441 ORTHO05D008203 2.2e-21 106.3 114 50.0
Eucgr.H02336 Eucalyptus grandis HOM05D006441 ORTHO05D008203 2.2e-21 106.3 75 66.7
Thhalv10010236m.g Eutrema salsugineum HOM05D006441 ORTHO05D008203 2.2e-21 106.3 130 48.5
Aa31LG4G18210 Aethionema arabicum HOM05D006441 ORTHO05D008203 2.9e-21 105.9 98 55.1
CARHR158800 Cardamine hirsuta HOM05D006441 ORTHO05D008203 3.7e-21 105.5 129 48.8
arahy.Tifrunner.gnm1.ann1.FY2PML Arachis hypogaea HOM05D006441 ORTHO05D008203 4.9e-21 105.1 138 49.3
BraA06t24888Z Brassica rapa HOM05D006441 ORTHO05D008203 4.9e-21 105.1 134 50.0
A06p17970 Brassica napus HOM05D006441 ORTHO05D008203 8.3e-21 104.4 131 49.6
arahy.Tifrunner.gnm1.ann1.H9DIKV Arachis hypogaea HOM05D006441 ORTHO05D008203 1.1e-20 104.0 138 48.6
TWI53G1431 Tripterygium wilfordii HOM05D006441 ORTHO05D008203 1.4e-20 103.6 147 42.2
SGA_v2.0_scaffold269G46276 Striga asiatica HOM05D006441 ORTHO05D008203 1.9e-20 103.2 122 48.4
Nitab4.5_0000142g0480 Nicotiana tabacum HOM05D006441 ORTHO05D008203 2.4e-20 102.8 148 50.0
BcaB01g00678 Brassica carinata HOM05D006441 ORTHO05D008203 5.4e-20 101.7 129 48.8
Migut.H00320 Erythranthe guttata HOM05D006441 ORTHO05D008203 5.4e-20 101.7 125 46.4
C08p24750 Brassica napus HOM05D006441 ORTHO05D008203 7.0e-20 101.3 129 48.8
BcaC07g39436 Brassica carinata HOM05D006441 ORTHO05D008203 9.2e-20 100.9 129 50.4
BolC8t50089H Brassica oleracea HOM05D006441 ORTHO05D008203 9.2e-20 100.9 129 50.4
Nitab4.5_0000776g0060 Nicotiana tabacum HOM05D006441 ORTHO05D008203 1.6e-19 100.1 103 55.3
AL5G29680 Arabidopsis lyrata HOM05D006441 ORTHO05D008203 3.5e-19 99.0 129 47.3
TAR628G1609 Trochodendron aralioides HOM05D006441 ORTHO05D008203 3.5e-19 99.0 146 45.2
LjContig00049g0002658 Lotus japonicus HOM05D006441 ORTHO05D008203 1.0e-18 97.4 124 48.4
Solyc02g092010.4 Solanum lycopersicum HOM05D006441 ORTHO05D008203 1.0e-18 97.4 144 45.8
Lsat_1_v5_gn_3_85860 Lactuca sativa HOM05D006441 ORTHO05D008203 1.7e-18 96.7 67 65.7
Carub.0005s1608 Capsella rubella HOM05D006441 ORTHO05D008203 2.3e-18 96.3 133 45.9
CAN.G1343.13 Capsicum annuum HOM05D006441 ORTHO05D008203 2.3e-18 96.3 88 53.4
Dinv23055 Davidia involucrata HOM05D006441 ORTHO05D008203 2.3e-18 96.3 144 43.8
Actinidia36417 Actinidia chinensis HOM05D006441 ORTHO05D008203 3.0e-18 95.9 153 42.5
MSTRG.23600 Avicennia marina HOM05D006441 ORTHO05D008203 3.0e-18 95.9 99 50.5
Sopen02g036590 Solanum pennellii HOM05D006441 ORTHO05D008203 3.0e-18 95.9 97 52.6
Sp5g12360 Schrenkiella parvula HOM05D006441 ORTHO05D008203 3.9e-18 95.5 133 48.1
PGSC0003DMG400021428 Solanum tuberosum HOM05D006441 ORTHO05D008203 6.6e-18 94.7 130 46.2
AT3G49725 Arabidopsis thaliana HOM05D006441 ORTHO05D008203 8.6e-18 94.4 129 46.5
Hund16422 Selenicereus undatus HOM05D006441 ORTHO05D008203 1.5e-17 93.6 95 49.5
ATR0019G023 Amborella trichopoda HOM05D006441 ORTHO05D008203 2.5e-17 92.8 87 54.0
DCAR_010797 Daucus carota HOM05D006441 ORTHO05D008203 2.5e-17 92.8 134 44.8
Lalb_Chr14g0365131 Lupinus albus HOM05D006441 ORTHO05D008203 5.6e-17 91.7 70 62.9
HPP92_008937 Vanilla planifolia HOM05D006441 ORTHO05D008203 7.3e-17 91.3 76 57.9
vmacro05378 Vaccinium macrocarpon HOM05D006441 ORTHO05D008203 1.6e-16 90.1 135 45.2
Rhsim10G0094400 Rhododendron simsii HOM05D006441 ORTHO05D008203 3.6e-16 89.0 58 72.4
Aqoxy6G02956 Aquilegia oxysepala HOM05D006441 ORTHO05D008203 6.2e-16 88.2 94 50.0
Cc07_g07440 Coffea canephora HOM05D006441 ORTHO05D008203 8.1e-16 87.8 92 50.0
Zm00001eb055970 Zea mays HOM05D006441 ORTHO05D008203 8.1e-16 87.8 90 51.1
EL10Ac6g15582 Beta vulgaris HOM05D006441 ORTHO05D008203 3.1e-15 85.9 64 60.9
Phvul.008G200200 Phaseolus vulgaris HOM05D006441 ORTHO05D008203 3.1e-15 85.9 87 51.7
HanXRQChr12g0377011 Helianthus annuus HOM05D006441 ORTHO05D008203 4.0e-15 85.5 102 50.0
Medtr5g089970 Medicago truncatula HOM05D006441 ORTHO05D008203 4.0e-15 85.5 91 50.5
Sc16g0002790 Simmondsia chinensis HOM05D006441 ORTHO05D008203 4.0e-15 85.5 65 63.1
TPR.G19350 Trifolium pratense HOM05D006441 ORTHO05D008203 5.2e-15 85.1 98 48.0
Ca_06220_v3 Cicer arietinum L. HOM05D006441 ORTHO05D008203 6.8e-15 84.7 99 48.5
Psat2g019280 Pisum sativum HOM05D006441 ORTHO05D008203 6.8e-15 84.7 104 47.1
Os03g0727900 Oryza sativa ssp. japonica HOM05D006441 ORTHO05D008203 1.2e-14 84.0 65 63.1
VMungo0647G1795 Vigna mungo HOM05D006441 ORTHO05D008203 1.5e-14 83.6 60 65.0
PSO675G4807 Papaver somniferum HOM05D006441 ORTHO05D008203 3.4e-14 82.4 143 40.6
Glyma.02G280500 Glycine max HOM05D006441 ORTHO05D008203 5.8e-14 81.6 65 60.0
AUR62007550 Chenopodium quinoa HOM05D006441 ORTHO05D008203 7.5e-14 81.3 131 39.7
PSO541G6514 Papaver somniferum HOM05D006441 ORTHO05D008203 3.7e-13 79.0 143 39.2
Ah.03g140760 Amaranthus hybridus HOM05D006441 ORTHO05D008203 8.3e-13 77.8 72 52.8
CANSAT01G2889 Cannabis sativa HOM05D006441 ORTHO05D008203 8.3e-13 77.8 56 67.9
Peaxi162Scf00096g01848 Petunia axillaris HOM05D006441 ORTHO05D008203 7.1e-12 74.7 58 63.8
BcaB08g36690 Brassica carinata HOM05D006441 ORTHO05D008203 9.2e-12 74.3 59 64.4
SEGI_39991 Sequoiadendron giganteum HOM05D006441 ORTHO05D008203 9.2e-12 74.3 78 51.3
Lj4A166T80 Lonicera japonica HOM05D006441 ORTHO05D008203 1.2e-08 63.9 132 36.4
unitig_899.g14592 Utricularia gibba HOM05D006441 ORTHO05D008203 1.2e-08 63.9 50 58.0
THA.LOC104810646 Tarenaya hassleriana HOM05D006441 ORTHO05D008203 4.7e-08 62.0 42 66.7
Mapoly0061s0091 Marchantia polymorpha HOM05D006441 ORTHO05D008203 1.4e-07 60.5 66 51.5
BcaB04g19401 Brassica carinata HOM05D006441 ORTHO05D008203 4.0e-07 58.9 47 63.8
ECA246G2498 Erigeron canadensis HOM05D006441 ORTHO05D008203 6.8e-07 58.2 50 54.0


User provided reference genes

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