Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 5.1e-41 170.6 85 100.0
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 1.9e-40 168.7 85 98.8
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 3.9e-33 144.4 79 91.1
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.9e-32 142.1 79 88.6
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.9e-32 142.1 79 88.6
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.9e-32 142.1 79 88.6
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.5e-32 141.7 79 87.3
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.7e-28 129.0 79 77.2
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 4.2e-27 124.4 82 73.2
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 7.9e-26 120.2 64 92.2
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.9e-24 115.5 79 69.6
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 3.7e-23 111.3 79 69.6
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.1e-22 109.8 79 69.6
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.4e-22 109.4 78 67.9
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 3.1e-22 108.2 79 67.1
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 3.1e-22 108.2 78 64.1
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 9.0e-22 106.7 79 65.8
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 4.5e-21 104.4 79 63.3
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 4.5e-21 104.4 79 64.6
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.0e-20 103.2 79 64.6
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-20 102.8 79 62.0
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.7e-20 102.4 77 64.9
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 1.7e-20 102.4 79 63.3
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 2.2e-20 102.1 79 60.8
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.9e-20 101.7 79 63.3
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 3.8e-20 101.3 79 59.5
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 4.9e-20 100.9 73 69.9
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 1.1e-19 99.8 79 55.7
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.1e-19 99.8 79 63.3
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 1.4e-19 99.4 79 57.0
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.4e-19 99.4 79 60.8
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 1.9e-19 99.0 73 69.9
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.5e-19 98.6 79 55.7
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.5e-19 98.6 64 70.3
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 2.5e-19 98.6 79 55.7
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 2.5e-19 98.6 79 55.7
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 3.2e-19 98.2 79 57.0
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 3.2e-19 98.2 79 55.7
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 3.2e-19 98.2 79 55.7
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 3.2e-19 98.2 79 55.7
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 3.2e-19 98.2 79 59.5
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 9.3e-19 96.7 79 54.4
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.2e-18 96.3 79 54.4
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.6e-18 95.9 79 54.4
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 1.6e-18 95.9 79 54.4
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 2.1e-18 95.5 79 55.7
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 3.5e-18 94.7 78 56.4
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.5e-18 94.7 82 56.1
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 3.5e-18 94.7 82 56.1
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 6.0e-18 94.0 80 62.5
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 7.9e-18 93.6 79 59.5
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 1.0e-17 93.2 79 55.7
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.3e-17 92.8 79 58.2
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.3e-17 92.0 73 60.3
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 2.3e-17 92.0 79 62.0
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 2.3e-17 92.0 79 58.2
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 3.0e-17 91.7 79 60.8
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 5.1e-17 90.9 79 60.8
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 8.7e-17 90.1 79 60.8
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 8.7e-17 90.1 79 59.5
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 8.7e-17 90.1 82 53.7
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 1.5e-16 89.4 79 58.2
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 1.5e-16 89.4 79 60.8
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 2.5e-16 88.6 78 52.6
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.3e-16 88.2 79 50.6
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 3.3e-16 88.2 79 53.2
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 3.3e-16 88.2 82 53.7
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 3.3e-16 88.2 80 51.2
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 4.3e-16 87.8 79 53.2
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 4.3e-16 87.8 79 59.5
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 7.4e-16 87.0 64 64.1
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 7.4e-16 87.0 64 64.1
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 7.4e-16 87.0 79 53.2
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 9.7e-16 86.7 79 51.9
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 9.7e-16 86.7 79 51.9
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.3e-15 86.3 79 54.4
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.6e-15 85.9 79 58.2
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.6e-15 85.9 79 55.7
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 2.2e-15 85.5 79 51.9
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 2.2e-15 85.5 79 46.8
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 2.8e-15 85.1 79 51.9
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.7e-15 84.7 75 52.0
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 3.7e-15 84.7 79 54.4
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 8.2e-15 83.6 79 51.9
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 1.4e-14 82.8 84 51.2
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 1.8e-14 82.4 79 53.2
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 4.1e-14 81.3 84 51.2
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.3e-14 80.9 82 48.8
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-13 79.7 38 97.4
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 4.5e-13 77.8 79 51.9
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.2e-12 75.5 73 45.2
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.9e-11 72.4 80 43.8
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 2.5e-11 72.0 75 48.0
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 4.6e-10 67.8 75 44.0
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 6.7e-09 63.9 79 43.0
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 6.7e-09 63.9 56 55.4
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 7.4e-08 60.5 79 39.2
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 9.7e-08 60.1 101 41.6
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 2.8e-07 58.5 35 71.4
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 4.8e-07 57.8 54 51.9
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 4.1e-06 54.7 79 40.5


User provided reference genes

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