Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 3.8e-137 491.5 245 100.0
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 6.1e-47 191.8 188 60.1
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 2.6e-45 186.4 188 58.0
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 5.7e-45 185.3 188 57.4
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 6.4e-44 181.8 200 56.0
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 8.3e-44 181.4 197 56.3
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 8.3e-44 181.4 184 57.6
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 9.2e-43 177.9 185 56.2
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 3.7e-36 156.0 175 53.1
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 4.1e-35 152.5 199 46.2
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-32 143.7 202 44.1
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 5.6e-32 142.1 198 44.4
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.2e-31 141.0 188 46.3
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 8.1e-31 138.3 199 42.7
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 1.4e-30 137.5 179 44.1
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 1.4e-30 137.5 178 43.8
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 3.1e-30 136.3 183 49.2
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 4.0e-30 136.0 110 65.5
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 6.8e-30 135.2 189 43.9
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 8.9e-30 134.8 198 43.9
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 1.2e-29 134.4 199 43.2
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.6e-29 133.3 198 41.4
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 4.4e-29 132.5 201 41.8
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 4.4e-29 132.5 204 41.7
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 5.8e-29 132.1 202 40.6
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 5.8e-29 132.1 197 42.1
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 5.8e-29 132.1 198 41.9
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 7.5e-29 131.7 177 42.9
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 9.9e-29 131.3 111 62.2
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.3e-28 131.0 202 41.1
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 1.3e-28 131.0 204 42.2
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.3e-28 131.0 167 46.1
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.7e-28 130.6 177 42.4
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 4.9e-28 129.0 201 40.3
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 6.4e-28 128.6 204 40.7
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.4e-27 127.5 107 61.7
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.4e-27 127.5 198 39.9
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.4e-27 127.5 198 39.9
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 2.4e-27 126.7 202 41.1
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.2e-27 126.3 198 39.4
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 5.4e-27 125.6 175 40.6
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.2e-26 124.4 187 39.0
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 1.6e-26 124.0 187 39.6
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.6e-26 124.0 187 39.6
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 2.7e-26 123.2 187 39.0
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.6e-26 122.5 189 36.5
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 7.8e-26 121.7 186 39.2
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 7.8e-26 121.7 125 51.2
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.0e-25 121.3 133 50.4
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.0e-25 121.3 204 38.2
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 1.0e-25 121.3 181 40.3
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 1.3e-25 120.9 143 46.9
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.3e-25 120.9 194 40.2
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 2.3e-25 120.2 190 40.0
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 5.1e-25 119.0 125 49.6
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 6.6e-25 118.6 109 56.9
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 6.6e-25 118.6 113 54.9
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 8.6e-25 118.2 125 51.2
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 8.6e-25 118.2 133 48.9
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 8.6e-25 118.2 181 40.3
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 1.1e-24 117.9 113 54.9
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.1e-24 117.9 201 37.8
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.1e-24 117.9 125 48.8
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.5e-24 117.5 113 54.0
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.5e-24 117.5 193 36.8
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 1.5e-24 117.5 107 56.1
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.9e-24 117.1 202 38.6
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 1.9e-24 117.1 248 33.5
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 2.5e-24 116.7 134 47.8
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 2.5e-24 116.7 113 54.0
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 3.3e-24 116.3 113 53.1
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 3.3e-24 116.3 113 53.1
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 4.3e-24 115.9 125 48.0
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.6e-24 115.5 81 69.1
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.6e-24 115.5 88 64.8
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 7.3e-24 115.2 195 35.4
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 9.5e-24 114.8 113 54.0
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 9.5e-24 114.8 113 53.1
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.6e-23 114.0 113 51.3
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 2.1e-23 113.6 103 57.3
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 2.8e-23 113.2 139 43.9
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.6e-23 112.8 187 36.9
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.6e-23 112.8 87 63.2
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 3.6e-23 112.8 113 51.3
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 4.7e-23 112.5 115 47.8
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 8.1e-23 111.7 105 54.3
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 8.1e-23 111.7 113 50.4
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 2.4e-22 110.2 108 51.9
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 2.4e-22 110.2 115 53.0
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 5.2e-22 109.0 240 35.8
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.2e-21 107.8 180 39.4
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-21 107.8 93 58.1
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.2e-20 103.6 108 48.1
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 4.9e-20 102.4 198 35.4
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 1.1e-19 101.3 106 50.0
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.4e-19 100.9 163 39.3
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 7.1e-19 98.6 110 47.3
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 4.6e-18 95.9 186 36.6
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.6e-18 95.9 106 50.0
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.6e-18 95.9 106 50.0
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 7.8e-18 95.1 159 40.3
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.0e-17 94.7 113 46.0
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 3.0e-17 93.2 108 48.1
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 1.9e-16 90.5 173 35.8
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 1.9e-16 90.5 173 35.8
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.4e-13 79.3 52 69.2
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 7.1e-11 72.0 130 33.1
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 1.6e-10 70.9 192 28.6
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 1.7e-09 67.4 140 35.7
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.1e-08 64.7 95 38.9
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.5e-08 64.3 110 32.7
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 3.3e-08 63.2 49 59.2
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 2.8e-07 60.1 95 40.0
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 4.8e-07 59.3 109 33.9
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 5.3e-06 55.8 61 50.8
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 9.0e-06 55.1 88 38.6


User provided reference genes

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