Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 0.0e+00 1389.4 697 100.0
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 0.0e+00 1262.7 703 92.0
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 0.0e+00 1176.0 703 86.3
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 0.0e+00 1159.1 692 86.3
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 0.0e+00 1143.6 702 85.2
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.6e-310 1067.8 707 80.3
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.7e-288 995.7 715 72.4
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 2.5e-263 912.1 704 69.7
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 8.7e-256 887.1 714 66.0
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.2e-252 876.7 700 66.1
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 7.4e-247 857.4 719 63.8
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.6e-246 856.3 705 63.5
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 2.9e-243 845.5 710 63.1
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 2.9e-243 845.5 700 63.3
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 4.2e-242 841.6 700 63.3
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 5.5e-242 841.3 700 63.0
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 2.1e-241 839.3 719 61.8
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 2.6e-239 832.4 714 61.5
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 9.7e-239 830.5 721 61.6
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 2.8e-238 828.9 715 61.5
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.8e-237 826.2 719 61.2
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 2.4e-237 825.9 719 61.2
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 3.1e-237 825.5 710 61.7
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 5.9e-236 821.2 716 60.3
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 7.7e-236 820.8 714 60.8
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 1.0e-235 820.5 722 60.9
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 3.8e-235 818.5 696 62.4
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 4.2e-234 815.1 681 63.6
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 1.2e-233 813.5 715 60.4
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 4.4e-231 805.1 714 60.8
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 8.2e-230 800.8 685 62.3
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 1.2e-228 797.0 712 60.0
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.6e-228 796.6 707 59.7
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.9e-226 789.6 714 59.4
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 1.1e-223 780.4 708 60.3
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.3e-219 766.9 701 58.5
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 2.2e-219 766.1 791 55.1
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 1.9e-218 763.1 710 58.3
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 1.4e-216 756.9 692 57.7
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 6.8e-216 754.6 704 57.5
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 1.7e-214 750.0 702 56.1
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 4.8e-214 748.4 702 56.0
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 4.1e-213 745.3 690 56.4
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 7.0e-213 744.6 720 55.8
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 2.9e-211 739.2 695 55.5
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 8.5e-211 737.6 695 55.5
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 2.5e-210 736.1 693 56.0
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 3.2e-210 735.7 707 55.7
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.2e-209 733.8 720 55.4
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.2e-209 733.8 710 56.2
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 8.0e-209 731.1 715 54.3
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 2.3e-208 729.6 712 55.2
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 5.7e-207 724.9 714 56.3
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 9.8e-207 724.2 702 54.1
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 3.7e-206 722.2 638 62.2
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 3.7e-206 722.2 700 54.4
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 3.5e-204 715.7 715 53.0
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 7.3e-202 708.0 640 60.3
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 2.3e-200 703.0 640 60.0
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.7e-198 696.8 616 60.2
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 4.9e-198 695.3 694 53.3
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 8.3e-198 694.5 737 53.2
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 2.3e-192 676.4 701 52.5
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 2.6e-191 672.9 695 51.8
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.4e-191 672.5 711 53.4
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.3e-190 670.6 697 51.5
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 1.2e-188 664.1 684 53.9
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 1.2e-188 664.1 477 72.1
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.0e-187 661.0 689 51.7
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 1.6e-185 653.7 690 51.3
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.6e-185 653.7 695 51.7
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 4.7e-185 652.1 702 49.7
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 8.1e-185 651.4 702 49.9
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.4e-184 650.6 707 50.1
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 5.2e-184 648.7 696 51.1
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.2e-183 647.5 689 50.5
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 3.2e-181 639.4 700 51.1
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.1e-181 639.0 557 62.5
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 2.7e-180 636.3 697 49.9
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 2.7e-180 636.3 696 49.0
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.0e-179 634.4 689 50.2
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 2.3e-179 633.3 702 48.4
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 3.3e-178 629.4 696 50.0
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 9.5e-178 627.9 693 49.5
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.9e-174 616.3 450 70.2
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 4.9e-174 615.5 672 49.7
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 1.9e-173 613.6 705 48.7
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 4.1e-173 612.5 695 48.6
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 3.5e-172 609.4 705 48.7
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 3.6e-169 599.4 726 47.1
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.4e-168 597.4 693 47.8
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.5e-167 594.0 694 48.7
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 4.3e-162 575.9 419 74.5
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 2.4e-160 570.1 693 47.2
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 6.9e-160 568.5 839 43.0
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 8.4e-158 561.6 475 61.5
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 2.1e-148 530.4 707 44.4
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 8.7e-147 525.0 411 64.7
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 7.4e-146 521.9 342 79.2
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 5.3e-144 515.8 542 51.7
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-141 507.3 675 47.9
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 4.6e-140 502.7 312 82.7
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 3.0e-139 500.0 708 43.9
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 7.9e-132 475.3 434 57.8
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 1.8e-131 474.2 574 52.1
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-123 448.0 255 89.0
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.4e-115 421.4 516 48.1
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 3.0e-115 420.2 707 40.7
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 2.4e-112 410.6 215 97.7
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 7.7e-103 379.0 728 34.1
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 3.2e-101 373.6 401 54.4
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 5.4e-96 356.3 429 46.9
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.5e-93 347.4 222 76.1
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.5e-93 347.4 222 76.1
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 5.5e-93 346.3 248 75.4
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.7e-89 334.7 715 33.1
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.9e-89 333.2 421 48.0
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 1.8e-83 314.7 849 30.2
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 9.5e-77 292.4 300 53.7
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.1e-67 262.3 330 47.6
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.1e-64 252.3 270 53.7
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 2.3e-62 244.6 270 52.6
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.2e-60 238.8 463 34.8
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 3.1e-59 234.2 150 82.0
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 8.9e-59 232.6 150 81.3
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-56 224.9 255 54.5
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.6e-55 220.3 419 35.8
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 9.6e-53 212.6 277 46.2
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.4e-51 208.0 235 44.7
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.5e-50 205.3 374 37.2
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.3e-49 202.2 253 45.8
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.8e-49 200.7 198 56.6
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.7e-46 191.8 225 50.2
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 8.7e-46 189.5 454 29.3
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 4.0e-43 180.6 184 57.6
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 6.4e-41 173.3 560 26.4
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.7e-39 167.9 218 45.4
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.8e-38 165.2 113 70.8
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.0e-35 154.1 161 50.3
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.0e-35 154.1 161 50.3
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.6e-31 142.1 126 51.6
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 5.1e-30 137.1 222 39.2
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.7e-28 131.0 114 56.1
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 1.9e-24 118.6 83 74.7
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 9.4e-16 89.7 179 36.3
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 5.1e-14 84.0 76 53.9
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 8.8e-14 83.2 75 48.0
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.3e-12 79.3 438 21.7
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 2.3e-06 58.5 47 57.4
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.1e-06 57.4 45 64.4


User provided reference genes

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