Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0320561 Rosa chinensis HOM05D008833 ORTHO05D010662 1.7e-64 249.2 127 100.0
RcHm_v2.0_Chr5g0047711 Rosa chinensis HOM05D008833 ORTHO05D000167 2.6e-33 145.6 103 73.8
RcHm_v2.0_Chr4g0413301 Rosa chinensis HOM05D008833 ORTHO05D010662 2.7e-30 135.6 105 67.6
RcHm_v2.0_Chr5g0038961 Rosa chinensis HOM05D008833 ORTHO05D000167 3.0e-29 132.1 105 63.8
RcHm_v2.0_Chr2g0122921 Rosa chinensis HOM05D008833 ORTHO05D000167 5.3e-26 121.3 105 58.1
RcHm_v2.0_Chr2g0135511 Rosa chinensis HOM05D008833 ORTHO05D010662 1.5e-17 93.2 102 46.1
RcHm_v2.0_Chr6g0276431 Rosa chinensis HOM05D008833 ORTHO05D010662 2.0e-17 92.8 103 43.7
RcHm_v2.0_Chr2g0142781 Rosa chinensis HOM05D008833 ORTHO05D010662 7.6e-17 90.9 102 45.1
RcHm_v2.0_Chr5g0044391 Rosa chinensis HOM05D008833 ORTHO05D010662 1.1e-15 87.0 102 43.1
RcHm_v2.0_Chr7g0239141 Rosa chinensis HOM05D008833 ORTHO05D010662 4.2e-15 85.1 87 50.6
FvH4_4g02431 Fragaria vesca HOM05D028367 ORTHO05D029428 9.4e-15 84.0 86 50.0
RcHm_v2.0_Chr5g0046251 Rosa chinensis HOM05D008833 ORTHO05D010662 1.6e-14 83.2 115 37.4
RcHm_v2.0_Chr3g0478611 Rosa chinensis HOM05D000003 ORTHO05D000004 3.9e-13 78.6 103 40.8
FvH4_3g28461 Fragaria vesca HOM05D000003 ORTHO05D014631 1.5e-12 76.6 103 38.8
RcHm_v2.0_Chr2g0107121 Rosa chinensis HOM05D008833 ORTHO05D010662 1.5e-12 76.6 104 43.3
RcHm_v2.0_Chr7g0227851 Rosa chinensis HOM05D008833 ORTHO05D000167 6.3e-11 71.2 101 36.6
COL.COLO4_30308 Corchorus olitorius HOM05D000003 ORTHO05D017149 8.2e-11 70.9 118 36.4
FvH4_4g07171 Fragaria vesca HOM05D008833 ORTHO05D012679 4.1e-10 68.6 102 34.3
Manes.06G094851 Manihot esculenta HOM05D000003 ORTHO05D000004 5.3e-10 68.2 101 36.6
RcHm_v2.0_Chr1g0337971 Rosa chinensis HOM05D008833 ORTHO05D010662 6.9e-10 67.8 102 37.3
RcHm_v2.0_Chr1g0339401 Rosa chinensis HOM05D008833 ORTHO05D010662 6.9e-10 67.8 102 37.3
RcHm_v2.0_Chr0c22g0500391 Rosa chinensis HOM05D008833 ORTHO05D000167 9.1e-10 67.4 92 44.6
RcHm_v2.0_Chr7g0206951 Rosa chinensis HOM05D013659 ORTHO05D012679 9.1e-10 67.4 92 44.6
Manes.07G069794 Manihot esculenta HOM05D000003 ORTHO05D000167 1.5e-09 66.6 101 35.6
RcHm_v2.0_Chr4g0389021 Rosa chinensis HOM05D000003 ORTHO05D000167 1.5e-09 66.6 100 40.0
QL07p036969 Quercus lobata HOM05D000003 ORTHO05D000167 3.4e-09 65.5 113 33.6
Atru.chr12.998 Acer truncatum HOM05D000003 ORTHO05D000167 5.9e-09 64.7 101 37.6
Atru.chr12.1685 Acer truncatum HOM05D000003 ORTHO05D000167 7.7e-09 64.3 101 37.6
FvH4_6g20342 Fragaria vesca HOM05D028191 ORTHO05D029428 7.7e-09 64.3 65 53.8
RcHm_v2.0_Chr1g0354891 Rosa chinensis HOM05D008097 ORTHO05D010102 1.3e-08 63.5 99 35.4
RcHm_v2.0_Chr7g0187741 Rosa chinensis HOM05D008097 ORTHO05D010102 1.7e-08 63.2 99 35.4
FAN25G1733 Fragaria x ananassa HOM05D028191 ORTHO05D010662 2.2e-08 62.8 79 40.5
CANSAT56G3498 Cannabis sativa HOM05D000003 ORTHO05D000167 2.9e-08 62.4 114 37.7
FAN03G0460 Fragaria x ananassa HOM05D008833 ORTHO05D010662 3.8e-08 62.0 96 36.5
Atru.chr10.672 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-08 61.6 102 38.2
FAN15G0023 Fragaria x ananassa HOM05D008833 ORTHO05D010662 5.0e-08 61.6 58 50.0
RcHm_v2.0_Chr5g0065221 Rosa chinensis HOM05D008833 ORTHO05D010662 5.0e-08 61.6 99 37.4
FvH4_7g03001 Fragaria vesca HOM05D010636 ORTHO05D011274 6.5e-08 61.2 101 34.7
FAN05G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.5e-08 61.2 64 50.0
Atru.chr10.1536 Acer truncatum HOM05D000003 ORTHO05D000167 8.5e-08 60.8 99 37.4
FvH4_3g30011 Fragaria vesca HOM05D008833 ORTHO05D010662 8.5e-08 60.8 96 33.3
FvH4_4g13701 Fragaria vesca HOM05D013595 ORTHO05D010662 1.1e-07 60.5 92 34.8
FAN14G5071 Fragaria x ananassa HOM05D008833 ORTHO05D010662 1.1e-07 60.5 106 33.0
Atru.chr7.1139 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-07 60.1 98 36.7
RcHm_v2.0_Chr6g0279961 Rosa chinensis HOM05D008097 ORTHO05D010102 1.4e-07 60.1 101 36.6
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-07 59.7 99 37.4
CANSAT78G0463 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-07 59.7 104 38.5
TWI36G1323 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 1.9e-07 59.7 93 33.3
Atru.chr6.3032 Acer truncatum HOM05D000170 ORTHO05D000154 2.5e-07 59.3 90 42.2
FAN22G0690 Fragaria x ananassa HOM05D013595 ORTHO05D010662 2.5e-07 59.3 101 33.7
FAN16G0367 Fragaria x ananassa HOM05D008833 ORTHO05D010662 3.2e-07 58.9 96 31.2
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 3.2e-07 58.9 101 32.7
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-07 58.5 115 34.8
Prupe.8G101300 Prunus persica HOM05D008097 ORTHO05D010102 4.2e-07 58.5 98 38.8
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-07 58.2 101 38.6
Atru.chr7.293 Acer truncatum HOM05D000003 ORTHO05D000167 5.5e-07 58.2 95 33.7
FAN12G0535 Fragaria x ananassa HOM05D008833 ORTHO05D000167 5.5e-07 58.2 102 33.3
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 5.5e-07 58.2 102 31.4
Atru.chr13.2597 Acer truncatum HOM05D000003 ORTHO05D000004 7.2e-07 57.8 99 36.4
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 9.4e-07 57.4 99 37.4
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 9.4e-07 57.4 104 31.7
CANSAT56G2867 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-06 57.0 99 34.3
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 1.2e-06 57.0 105 34.3
CANSAT78G1465 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 98 31.6
FAN06G2346 Fragaria x ananassa HOM05D008833 ORTHO05D010662 1.6e-06 56.6 75 40.0
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 2.1e-06 56.2 105 34.3
Atru.chr13.1628 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-06 56.2 98 36.7
Atru.chr4.686 Acer truncatum HOM05D000003 ORTHO05D000126 2.1e-06 56.2 99 36.4
Atru.chr9.812 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-06 56.2 99 36.4
CANSAT11G1229 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 56.2 90 38.9
Atru.chr2.1933 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-06 55.8 98 37.8
Atru.chr4.85 Acer truncatum HOM05D000003 ORTHO05D000167 2.7e-06 55.8 98 33.7
Atru.chr6.782 Acer truncatum HOM05D000003 ORTHO05D000167 2.7e-06 55.8 101 38.6
TWI09G0364 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 2.7e-06 55.8 101 32.7
Atru.chr10.1266 Acer truncatum HOM05D000003 ORTHO05D000167 3.6e-06 55.5 89 39.3
Atru.chr13.1861 Acer truncatum HOM05D000003 ORTHO05D000167 3.6e-06 55.5 99 38.4
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 3.6e-06 55.5 103 36.9
Atru.chr6.1712 Acer truncatum HOM05D000003 ORTHO05D000167 3.6e-06 55.5 103 35.9
CANSAT25G2707 Cannabis sativa HOM05D000003 ORTHO05D000167 3.6e-06 55.5 111 29.7
CANSAT80G2681 Cannabis sativa HOM05D000003 ORTHO05D000167 3.6e-06 55.5 85 40.0
AUR62034216 Chenopodium quinoa HOM05D000003 ORTHO05D000167 3.6e-06 55.5 80 38.8
Sed0004028 Sechium edule HOM05D000003 ORTHO05D000004 3.6e-06 55.5 100 36.0
Sed0013373 Sechium edule HOM05D000003 ORTHO05D000167 3.6e-06 55.5 103 33.0
Atru.chr1.3779 Acer truncatum HOM05D000003 ORTHO05D000167 4.7e-06 55.1 99 35.4
Atru.chr10.362 Acer truncatum HOM05D000003 ORTHO05D000167 4.7e-06 55.1 95 35.8
Atru.chr8.1618 Acer truncatum HOM05D000003 ORTHO05D000167 4.7e-06 55.1 99 34.3
CANSAT56G0133 Cannabis sativa HOM05D000003 ORTHO05D000167 4.7e-06 55.1 86 41.9
FvH4_3g37001 Fragaria vesca HOM05D000003 ORTHO05D000006 4.7e-06 55.1 82 37.8
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 6.1e-06 54.7 104 34.6
CANSAT80G0420 Cannabis sativa HOM05D000003 ORTHO05D000167 6.1e-06 54.7 85 40.0
FvH4_1g18471 Fragaria vesca HOM05D016749 ORTHO05D019194 6.1e-06 54.7 105 31.4
FAN12G2205 Fragaria x ananassa HOM05D013595 ORTHO05D010662 6.1e-06 54.7 101 31.7
FAN28G1122 Fragaria x ananassa HOM05D013595 ORTHO05D010662 6.1e-06 54.7 97 37.1
RcHm_v2.0_Chr1g0331041 Rosa chinensis HOM05D013595 ORTHO05D010662 6.1e-06 54.7 75 38.7
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 7.9e-06 54.3 98 35.7
Atru.chr8.1063 Acer truncatum HOM05D000003 ORTHO05D000167 7.9e-06 54.3 98 35.7
arahy.Tifrunner.gnm1.ann1.MHV6FT Arachis hypogaea HOM05D027442 ORTHO05D007254 7.9e-06 54.3 101 28.7
FAN03G2020 Fragaria x ananassa HOM05D008097 ORTHO05D010102 7.9e-06 54.3 100 35.0
FAN25G3685 Fragaria x ananassa HOM05D008097 ORTHO05D010102 7.9e-06 54.3 100 35.0
TWI38G0639 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 7.9e-06 54.3 101 32.7


User provided reference genes

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