Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0320331 Rosa chinensis HOM05D006849 ORTHO05D003348 2.3e-90 335.5 161 100.0
RcHm_v2.0_Chr5g0063301 Rosa chinensis HOM05D006849 ORTHO05D003348 2.8e-88 328.6 161 97.5
RcHm_v2.0_Chr5g0035621 Rosa chinensis HOM05D006849 ORTHO05D003348 5.2e-71 271.2 135 95.6
RcHm_v2.0_Chr6g0262741 Rosa chinensis HOM05D006849 ORTHO05D003348 6.8e-71 270.8 135 96.3
RcHm_v2.0_Chr3g0491361 Rosa chinensis HOM05D006849 ORTHO05D003348 3.5e-51 205.3 106 91.5
RcHm_v2.0_Chr2g0141711 Rosa chinensis HOM05D006849 ORTHO05D003348 2.3e-42 176.0 134 57.5
RcHm_v2.0_Chr5g0066571 Rosa chinensis HOM05D006849 ORTHO05D003348 1.3e-40 170.2 132 55.3
RcHm_v2.0_Chr5g0053321 Rosa chinensis HOM05D006849 ORTHO05D003348 1.2e-38 163.7 132 54.5
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 1.5e-38 163.3 164 48.8
RcHm_v2.0_Chr2g0122381 Rosa chinensis HOM05D006849 ORTHO05D003348 5.5e-36 154.8 131 51.9
RcHm_v2.0_Chr2g0133331 Rosa chinensis HOM05D006849 ORTHO05D003348 6.0e-35 151.4 128 51.6
RcHm_v2.0_Chr2g0149141 Rosa chinensis HOM05D006849 ORTHO05D003348 1.5e-33 146.7 134 47.8
FAN16G1404 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.3e-33 145.2 129 48.1
RcHm_v2.0_Chr7g0212031 Rosa chinensis HOM05D006849 ORTHO05D003348 7.6e-30 134.4 110 53.6
FvH4_5g21501 Fragaria vesca HOM05D006849 ORTHO05D003348 3.2e-28 129.0 119 45.4
FAN21G2011 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.2e-28 129.0 124 46.8
FAN22G1474 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.3e-28 127.5 138 44.9
RcHm_v2.0_Chr5g0010461 Rosa chinensis HOM05D006849 ORTHO05D003348 9.3e-28 127.5 130 44.6
FAN14G2538 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.1e-27 126.3 124 46.0
RcHm_v2.0_Chr2g0133271 Rosa chinensis HOM05D006849 ORTHO05D003348 3.6e-27 125.6 105 52.4
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 3.0e-26 122.5 132 40.9
RcHm_v2.0_Chr2g0174211 Rosa chinensis HOM05D006849 ORTHO05D003348 5.7e-25 118.2 111 50.5
FAN02G2385 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.7e-24 115.5 130 39.2
FAN14G0390 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.3e-24 114.8 100 47.0
FvH4_2g22171 Fragaria vesca HOM05D006849 ORTHO05D003348 1.4e-23 113.6 135 38.5
FAN06G0436 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.1e-23 112.5 134 37.3
FAN23G2888 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.8e-21 105.5 131 35.9
FvH4_5g19920 Fragaria vesca HOM05D006849 ORTHO05D003348 1.1e-20 104.0 131 36.6
FvH4_2g06412 Fragaria vesca HOM05D006849 ORTHO05D003348 1.6e-19 100.1 85 52.9
FAN01G0657 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.4e-18 97.1 131 33.6
FAN01G3000 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.4e-18 97.1 131 33.6
FAN21G0042 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.8e-18 96.7 127 32.3
FvH4_3g02850 Fragaria vesca HOM05D000096 ORTHO05D000045 2.3e-18 96.3 132 34.8
FAN26G2587 Fragaria x ananassa HOM05D007856 ORTHO05D003348 5.1e-18 95.1 130 37.7
FvH4_4g22470 Fragaria vesca HOM05D006849 ORTHO05D003348 6.7e-18 94.7 89 46.1
FvH4_6g08820 Fragaria vesca HOM05D007856 ORTHO05D003348 6.7e-18 94.7 129 36.4
FAN24G3491 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.7e-18 94.7 80 50.0
FvH4_1g07041 Fragaria vesca HOM05D007856 ORTHO05D003348 2.0e-17 93.2 129 33.3
FvH4_2g08146 Fragaria vesca HOM05D007856 ORTHO05D003348 2.0e-17 93.2 131 33.6
Potri.003G004401 Populus trichocarpa HOM05D006849 ORTHO05D003348 2.0e-17 93.2 129 37.2
Potri.019G061550 Populus trichocarpa HOM05D006849 ORTHO05D003348 2.6e-17 92.8 130 36.9
FAN10G4353 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.3e-17 92.4 105 38.1
MD07G1084700 Malus domestica HOM05D006849 ORTHO05D003348 2.8e-16 89.4 132 29.5
FAN20G3088 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.1e-15 87.4 135 34.1
FAN24G0953 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.4e-15 87.0 131 31.3
RcHm_v2.0_Chr5g0050871 Rosa chinensis HOM05D006849 ORTHO05D003348 1.8e-15 86.7 59 61.0
RcHm_v2.0_Chr1g0378741 Rosa chinensis HOM05D006849 ORTHO05D003348 1.0e-13 80.9 65 55.4
RcHm_v2.0_Chr4g0413141 Rosa chinensis HOM05D006849 ORTHO05D003348 1.3e-13 80.5 69 46.4
FAN23G1437 Fragaria x ananassa HOM05D000005 ORTHO05D003348 2.2e-13 79.7 145 29.7
MD17G1252600 Malus domestica HOM05D006849 ORTHO05D003348 2.9e-13 79.3 81 42.0
FvH4_3g10141 Fragaria vesca HOM05D007856 ORTHO05D003348 3.8e-13 79.0 106 34.9
FvH4_7g08311 Fragaria vesca HOM05D007856 ORTHO05D003348 3.8e-13 79.0 106 34.9
FvH4_7g18891 Fragaria vesca HOM05D007856 ORTHO05D003348 3.8e-13 79.0 106 34.9
FAN19G3137 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.1e-12 77.4 70 45.7
Thecc.06G012500 Theobroma cacao HOM05D007876 ORTHO05D007430 4.2e-12 75.5 126 27.8
FAN16G1806 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.4e-12 74.3 76 40.8
MD11G1203900 Malus domestica HOM05D007856 ORTHO05D003348 1.2e-11 73.9 102 31.4
FvH4_3g14392 Fragaria vesca HOM05D000004 ORTHO05D000002 2.7e-11 72.8 93 33.3
FAN04G0160 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.7e-11 72.8 97 35.1
RcHm_v2.0_Chr7g0184001 Rosa chinensis HOM05D006849 ORTHO05D003348 1.8e-10 70.1 38 84.2
FAN15G3621 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.0e-10 69.3 76 38.2
Potri.001G165480 Populus trichocarpa HOM05D018388 ORTHO05D003348 3.9e-10 68.9 80 40.0
FvH4_5g26612 Fragaria vesca HOM05D007856 ORTHO05D003348 8.8e-10 67.8 68 36.8
FAN07G1000 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.1e-09 67.4 127 33.9
PSO675G3596 Papaver somniferum HOM05D002907 ORTHO05D013727 1.5e-09 67.0 122 31.1
FAN16G3654 Fragaria x ananassa HOM05D007856 ORTHO05D003348 5.7e-09 65.1 70 34.3
TWI63G1000 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.7e-08 63.5 129 27.1
SEGI_23554 Sequoiadendron giganteum HOM05D000824 ORTHO05D003555 2.2e-08 63.2 135 29.6
PSO832G3413 Papaver somniferum HOM05D002907 ORTHO05D013727 3.7e-08 62.4 123 33.3
TWI53G0769 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.7e-08 62.4 123 25.2
TWI73G0686 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.7e-08 62.4 127 29.1
FAN17G1070 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.8e-08 62.0 76 34.2
Thecc.04G109000 Theobroma cacao HOM05D007876 ORTHO05D007430 4.8e-08 62.0 96 27.1
TWI60G0328 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 4.8e-08 62.0 127 29.9
TWI39G0063 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 6.3e-08 61.6 128 26.6
Zm00001eb388870 Zea mays HOM05D008312 ORTHO05D010433 8.2e-08 61.2 135 25.2
Zm00001eb388900 Zea mays HOM05D008312 ORTHO05D010433 8.2e-08 61.2 135 25.2
Thecc.06G139500 Theobroma cacao HOM05D007876 ORTHO05D010433 1.1e-07 60.8 121 24.0
FvH4_2g10321 Fragaria vesca HOM05D006849 ORTHO05D003348 1.4e-07 60.5 53 47.2
QL03p025410 Quercus lobata HOM05D000005 ORTHO05D000065 1.8e-07 60.1 120 27.5
FAN09G1384 Fragaria x ananassa HOM05D000053 ORTHO05D000448 3.1e-07 59.3 95 29.5
Gohir.A03G070300 Gossypium hirsutum HOM05D000824 ORTHO05D003555 3.1e-07 59.3 127 26.0
DCAR_002704 Daucus carota HOM05D002492 ORTHO05D002621 5.3e-07 58.5 122 27.9
DCAR_026108 Daucus carota HOM05D002492 ORTHO05D002621 5.3e-07 58.5 122 27.9
FvH4_2g13511 Fragaria vesca HOM05D006849 ORTHO05D003348 7.0e-07 58.2 57 38.6
FAN13G2002 Fragaria x ananassa HOM05D000824 ORTHO05D003555 9.1e-07 57.8 127 26.0
TWI53G0762 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 1.2e-06 57.4 134 26.9
Gorai.003G101500 Gossypium raimondii HOM05D000824 ORTHO05D003555 2.0e-06 56.6 127 25.2
CANSAT25G3758 Cannabis sativa HOM05D002907 ORTHO05D005554 2.6e-06 56.2 120 24.2
FAN08G3534 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.6e-06 56.2 118 28.8
DCAR_020135 Daucus carota HOM05D002907 ORTHO05D005554 3.5e-06 55.8 121 26.4
Pp3c1_20770 Physcomitrium patens HOM05D000824 ORTHO05D003555 3.5e-06 55.8 139 26.6
COL.COLO4_02862 Corchorus olitorius HOM05D010526 ORTHO05D007430 4.5e-06 55.5 115 28.7
FvH4_5g13771 Fragaria vesca HOM05D000824 ORTHO05D003555 4.5e-06 55.5 127 24.4
FAN18G4284 Fragaria x ananassa HOM05D000824 ORTHO05D003555 4.5e-06 55.5 127 24.4
FAN22G1481 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.5e-06 55.5 82 32.9
MD14G1159700 Malus domestica HOM05D006849 ORTHO05D003348 4.5e-06 55.5 53 35.8
Thecc.04G012000 Theobroma cacao HOM05D000096 ORTHO05D000045 4.5e-06 55.5 124 24.2
Gohir.D03G096700 Gossypium hirsutum HOM05D000824 ORTHO05D003555 7.7e-06 54.7 127 25.2
QL10p011037 Quercus lobata HOM05D002907 ORTHO05D000065 7.7e-06 54.7 120 28.3
Thecc.04G155200 Theobroma cacao HOM05D000096 ORTHO05D000045 7.7e-06 54.7 124 24.2


User provided reference genes

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