Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 3.4e-228 794.7 401 100.0
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 4.0e-160 568.5 601 56.7
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.0e-148 529.6 594 54.2
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 7.7e-148 527.7 582 55.3
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 7.2e-146 521.2 601 53.4
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 8.0e-145 517.7 601 53.1
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 4.6e-132 475.3 574 52.1
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 7.3e-114 414.8 613 43.7
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 8.4e-102 374.8 250 79.2
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 4.8e-89 332.4 615 37.2
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.1e-88 331.3 602 40.0
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.9e-85 320.5 600 36.3
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.9e-85 320.5 621 36.1
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 7.1e-85 318.5 617 37.1
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 9.3e-85 318.2 608 36.5
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 9.3e-85 318.2 605 37.9
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 2.1e-84 317.0 621 36.4
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 2.3e-83 313.5 609 35.8
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 1.5e-82 310.8 600 36.0
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 1.9e-82 310.5 612 35.5
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 4.3e-82 309.3 601 35.9
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.3e-81 307.8 619 36.3
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 8.1e-81 305.1 615 36.7
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.4e-80 304.3 614 35.2
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.8e-80 303.9 615 36.4
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 2.0e-79 300.4 610 36.2
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 7.6e-79 298.5 615 36.6
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.0e-78 298.1 612 35.0
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 8.4e-78 295.0 615 36.3
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 1.9e-77 293.9 612 36.1
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 7.1e-77 292.0 615 35.6
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 1.8e-75 287.3 643 33.6
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 9.6e-74 281.6 606 35.3
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 2.1e-73 280.4 625 33.0
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 3.7e-73 279.6 601 34.3
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 4.8e-73 279.3 621 34.1
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 4.8e-73 279.3 487 39.6
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 6.3e-73 278.9 577 36.0
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 1.4e-72 277.7 578 36.2
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 2.4e-72 276.9 159 91.2
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 3.1e-72 276.6 605 33.9
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 5.3e-72 275.8 610 31.6
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 1.3e-70 271.2 599 33.6
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 3.2e-69 266.5 163 86.5
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 5.5e-69 265.8 561 35.3
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 9.3e-69 265.0 163 85.9
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.1e-66 258.1 600 31.3
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 5.7e-66 255.8 619 32.6
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 7.4e-66 255.4 613 31.2
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.3e-65 254.6 603 32.2
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 3.7e-65 253.1 619 33.0
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 3.7e-65 253.1 635 32.1
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 2.4e-64 250.4 610 29.7
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 4.5e-63 246.1 613 29.4
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 4.5e-63 246.1 166 79.5
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 2.9e-62 243.4 611 29.0
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 3.8e-62 243.0 611 29.0
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 3.8e-62 243.0 603 30.5
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 5.0e-62 242.7 607 31.8
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 2.5e-61 240.4 601 30.4
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 3.2e-61 240.0 619 29.9
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 3.2e-61 240.0 613 30.8
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 4.2e-61 239.6 600 29.7
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.2e-60 238.0 612 31.0
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 3.0e-59 233.4 605 32.4
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.4e-56 224.6 619 29.9
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 5.9e-55 219.2 611 28.3
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 7.7e-55 218.8 505 34.1
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.3e-54 218.0 616 30.4
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 2.9e-54 216.9 615 30.4
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 2.1e-52 210.7 724 27.2
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 3.9e-51 206.5 585 29.2
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.7e-50 202.6 351 38.7
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 9.7e-50 201.8 318 39.0
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 2.8e-49 200.3 615 27.2
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 1.4e-48 198.0 553 28.2
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 7.0e-48 195.7 166 63.9
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.0e-47 194.1 175 61.1
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 2.0e-47 194.1 156 69.9
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 7.7e-47 192.2 260 46.2
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.7e-46 191.0 259 41.3
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.9e-46 190.3 259 41.7
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 1.1e-45 188.3 614 28.7
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 3.2e-45 186.8 259 41.3
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 7.2e-45 185.7 256 40.6
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 7.2e-45 185.7 260 45.4
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 9.4e-45 185.3 614 26.2
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 9.4e-45 185.3 544 30.7
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 2.7e-44 183.7 615 26.0
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 3.0e-43 180.3 544 27.4
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 5.2e-43 179.5 486 28.6
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 1.5e-42 177.9 256 40.2
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 2.6e-42 177.2 161 62.1
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 9.7e-42 175.3 153 60.8
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 9.7e-42 175.3 263 41.8
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 2.8e-41 173.7 537 27.6
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 4.8e-41 172.9 256 37.9
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.2e-41 172.2 237 46.0
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 3.1e-40 170.2 256 37.9
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 4.1e-40 169.9 258 39.9
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 5.3e-40 169.5 270 40.0
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.0e-38 165.2 257 37.4
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.7e-38 164.5 383 34.2
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.2e-38 164.1 256 37.1
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 2.9e-38 163.7 612 25.3
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 8.5e-38 162.2 257 38.9
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 1.5e-37 161.4 613 25.4
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 5.5e-37 159.5 183 47.5
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 9.4e-37 158.7 612 25.0
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 1.2e-36 158.3 255 36.1
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.1e-36 157.5 195 43.6
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.0e-35 153.3 223 42.6
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 4.0e-35 153.3 582 24.9
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 5.2e-35 152.9 293 35.5
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.7e-33 147.9 76 90.8
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 5.0e-30 136.3 582 24.6
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 4.2e-29 133.3 584 25.3
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 2.8e-28 130.6 492 26.2
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 1.5e-26 124.8 193 38.9
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 2.6e-26 124.0 234 35.5
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 2.0e-23 114.4 205 39.0
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.0e-22 109.8 131 53.4
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 6.1e-20 102.8 241 29.9
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 2.3e-19 100.9 161 41.6
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 3.0e-19 100.5 52 94.2
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 2.0e-18 97.8 279 27.6
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 7.5e-18 95.9 239 29.3
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.9e-17 94.0 130 42.3
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.1e-16 92.0 131 40.5
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 9.2e-16 89.0 138 37.7
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 3.3e-13 80.5 38 97.4
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 3.3e-13 80.5 38 97.4
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 1.6e-12 78.2 206 30.6
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 4.7e-12 76.6 165 35.2
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.4e-10 70.5 137 30.7
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.4e-10 70.5 137 37.2
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.2e-08 62.4 30 90.0
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.2e-08 62.4 30 90.0
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 4.6e-07 60.1 234 24.8
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 6.0e-07 59.7 95 40.0
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 6.0e-07 59.7 79 46.8
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 6.0e-07 59.7 79 46.8
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 1.0e-06 58.9 158 32.3
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 6.6e-06 56.2 73 45.2


User provided reference genes

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