Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 2.1e-54 215.7 98 100.0
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 6.3e-27 124.4 96 62.5
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 2.0e-25 119.4 88 64.8
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 4.5e-25 118.2 87 64.4
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 4.5e-25 118.2 88 67.0
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 5.0e-24 114.8 88 63.6
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 5.0e-24 114.8 88 63.6
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 5.0e-24 114.8 88 63.6
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 6.5e-24 114.4 107 55.1
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 1.5e-23 113.2 81 66.7
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 3.2e-23 112.1 98 58.2
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 3.2e-23 112.1 88 65.9
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 4.2e-23 111.7 77 71.4
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 4.2e-23 111.7 77 71.4
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 4.2e-23 111.7 77 70.1
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 5.5e-23 111.3 77 70.1
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 5.5e-23 111.3 112 55.4
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 7.2e-23 110.9 86 65.1
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 7.2e-23 110.9 84 64.3
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 9.4e-23 110.5 84 64.3
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 1.2e-22 110.2 85 64.7
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.2e-22 110.2 112 56.2
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 2.1e-22 109.4 77 68.8
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 2.1e-22 109.4 77 68.8
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 2.1e-22 109.4 77 68.8
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 2.7e-22 109.0 77 67.5
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 4.7e-22 108.2 87 63.2
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 4.7e-22 108.2 77 68.8
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 4.7e-22 108.2 77 68.8
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 4.7e-22 108.2 81 64.2
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 4.7e-22 108.2 81 64.2
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 6.1e-22 107.8 87 63.2
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 6.1e-22 107.8 87 63.2
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 6.1e-22 107.8 109 56.9
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 8.0e-22 107.5 78 67.9
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 8.0e-22 107.5 87 62.1
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 8.0e-22 107.5 85 62.4
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 8.0e-22 107.5 87 62.1
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 8.0e-22 107.5 104 55.8
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 8.0e-22 107.5 77 68.8
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 1.0e-21 107.1 113 54.9
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 1.0e-21 107.1 142 45.8
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 1.0e-21 107.1 133 47.4
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 1.4e-21 106.7 97 58.8
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 1.4e-21 106.7 86 62.8
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.8e-21 106.3 85 63.5
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 2.3e-21 105.9 77 67.5
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 2.3e-21 105.9 77 67.5
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 2.3e-21 105.9 77 67.5
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 2.3e-21 105.9 77 67.5
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 2.3e-21 105.9 88 62.5
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 2.3e-21 105.9 88 62.5
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 2.3e-21 105.9 88 62.5
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 2.3e-21 105.9 80 65.0
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 2.3e-21 105.9 81 64.2
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 3.0e-21 105.5 109 54.1
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 3.0e-21 105.5 78 67.9
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 3.0e-21 105.5 77 67.5
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 3.0e-21 105.5 105 57.1
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 4.0e-21 105.1 77 67.5
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 4.0e-21 105.1 76 67.1
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 5.2e-21 104.8 110 55.5
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 5.2e-21 104.8 110 55.5
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 5.2e-21 104.8 77 66.2
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 5.2e-21 104.8 77 67.5
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 5.2e-21 104.8 77 68.8
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 8.8e-21 104.0 76 67.1
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 1.1e-20 103.6 100 56.0
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 1.1e-20 103.6 77 66.2
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.1e-20 103.6 81 63.0
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.1e-20 103.6 81 63.0
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 1.5e-20 103.2 85 62.4
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 1.5e-20 103.2 77 66.2
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 1.5e-20 103.2 86 61.6
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 1.5e-20 103.2 76 67.1
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 2.0e-20 102.8 77 66.2
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 2.0e-20 102.8 106 54.7
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 2.0e-20 102.8 111 54.1
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 2.0e-20 102.8 110 53.6
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 2.0e-20 102.8 78 64.1
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 2.0e-20 102.8 78 64.1
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 2.6e-20 102.4 80 66.2
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 3.3e-20 102.1 81 63.0
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 3.3e-20 102.1 77 64.9
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 4.4e-20 101.7 110 51.8
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 4.4e-20 101.7 77 64.9
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 5.7e-20 101.3 77 64.9
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 5.7e-20 101.3 77 64.9
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 5.7e-20 101.3 77 64.9
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 5.7e-20 101.3 77 64.9
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 5.7e-20 101.3 77 64.9
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 7.4e-20 100.9 106 51.9
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 9.7e-20 100.5 110 53.6
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 1.3e-19 100.1 98 59.2
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 1.3e-19 100.1 74 67.6
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 1.7e-19 99.8 98 61.2
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 1.7e-19 99.8 80 63.8
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 1.7e-19 99.8 78 61.5
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 1.7e-19 99.8 106 53.8
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 1.7e-19 99.8 106 53.8
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 1.7e-19 99.8 78 67.9
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 2.2e-19 99.4 78 65.4
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 2.8e-19 99.0 78 62.8
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 2.8e-19 99.0 82 63.4
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 2.8e-19 99.0 98 55.1
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 3.7e-19 98.6 69 71.0
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 3.7e-19 98.6 76 67.1
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 6.3e-19 97.8 71 66.2
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 8.2e-19 97.4 79 64.6
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 8.2e-19 97.4 100 57.0
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 8.2e-19 97.4 100 57.0
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 1.1e-18 97.1 63 74.6
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 1.4e-18 96.7 69 69.6
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 2.4e-18 95.9 77 63.6
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 2.4e-18 95.9 69 69.6
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 3.1e-18 95.5 100 56.0
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 3.1e-18 95.5 100 56.0
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 3.1e-18 95.5 100 56.0
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 4.1e-18 95.1 63 74.6
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 4.1e-18 95.1 107 48.6
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 5.3e-18 94.7 74 64.9
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 9.1e-18 94.0 84 59.5
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.2e-17 93.6 76 60.5
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 2.0e-17 92.8 71 64.8
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 2.0e-17 92.8 100 52.0
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 2.0e-17 92.8 76 60.5
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 2.6e-17 92.4 69 65.2
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 4.5e-17 91.7 69 65.2
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 4.5e-17 91.7 69 65.2
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 7.7e-17 90.9 63 71.4
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 7.7e-17 90.9 69 65.2
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 7.7e-17 90.9 69 65.2
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 7.7e-17 90.9 69 65.2
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 1.0e-16 90.5 84 54.8
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 1.0e-16 90.5 97 49.5
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 1.7e-16 89.7 84 54.8
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 2.9e-16 89.0 69 65.2
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 5.0e-16 88.2 63 68.3
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 6.5e-16 87.8 94 50.0
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 1.9e-15 86.3 121 46.3
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 3.2e-15 85.5 64 64.1
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.2e-14 83.6 66 63.6
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.2e-14 83.6 85 54.1
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 2.1e-14 82.8 66 62.1
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 2.7e-14 82.4 79 54.4
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 3.6e-14 82.0 66 60.6
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 4.7e-14 81.6 75 54.7
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 6.1e-14 81.3 90 50.0
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 8.0e-14 80.9 66 60.6
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 2.3e-13 79.3 61 57.4
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 4.0e-13 78.6 65 58.5
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 5.2e-13 78.2 69 58.0
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 1.5e-12 76.6 68 57.4
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 1.5e-12 76.6 68 57.4
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 2.0e-12 76.3 92 48.9
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 4.4e-12 75.1 62 61.3
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 5.7e-12 74.7 62 61.3
CANSAT01G1829 Cannabis sativa HOM05D003583 ORTHO05D004169 1.3e-11 73.6 92 43.5
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 1.7e-11 73.2 63 60.3
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 8.3e-11 70.9 88 44.3
CANSAT01G3274 Cannabis sativa HOM05D003583 ORTHO05D004169 2.4e-10 69.3 59 52.5
Cfa015657 Carpinus fangiana HOM05D003583 ORTHO05D004169 1.2e-09 67.0 51 62.7
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 4.5e-09 65.1 53 56.6
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 4.5e-09 65.1 47 63.8
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 1.1e-07 60.5 69 52.2
RcHm_v2.0_Chr5g0072291 Rosa chinensis HOM05D003583 ORTHO05D004169 2.1e-06 56.2 39 69.2


User provided reference genes

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