Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 1.0e-61 240.0 130 100.0
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 1.8e-45 186.0 138 79.0
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 1.5e-44 183.0 138 79.0
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 3.2e-42 175.3 132 76.5
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 3.6e-38 161.8 132 73.5
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 1.4e-34 149.8 132 69.7
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.0e-28 129.4 135 60.0
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 8.3e-27 124.0 141 53.2
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 8.3e-27 124.0 140 57.1
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 5.4e-26 121.3 137 56.9
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 7.1e-26 120.9 143 53.8
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 9.2e-26 120.6 141 52.5
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 2.1e-25 119.4 129 55.8
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 3.5e-25 118.6 151 53.0
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 3.5e-25 118.6 133 58.6
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 4.6e-25 118.2 133 57.1
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 6.6e-24 114.4 134 53.7
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 2.5e-23 112.5 125 57.6
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 3.3e-23 112.1 132 53.0
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 7.3e-23 110.9 140 57.1
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 7.3e-23 110.9 123 56.1
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 9.5e-23 110.5 134 55.2
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 2.1e-22 109.4 149 53.7
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 2.1e-22 109.4 134 50.7
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 3.6e-22 108.6 135 51.1
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 3.6e-22 108.6 136 50.7
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 2.4e-21 105.9 91 61.5
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 2.4e-21 105.9 91 61.5
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 6.8e-21 104.4 148 52.7
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 4.4e-20 101.7 151 51.0
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 5.8e-20 101.3 147 53.7
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 7.6e-20 100.9 142 49.3
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 4.9e-19 98.2 146 46.6
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 1.1e-18 97.1 132 47.7
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 1.4e-18 96.7 128 47.7
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 1.9e-18 96.3 131 49.6
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 1.9e-18 96.3 105 53.3
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 2.4e-18 95.9 134 49.3
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 2.4e-18 95.9 132 46.2
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 3.2e-18 95.5 93 59.1
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 5.4e-18 94.7 163 44.2
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 7.1e-18 94.4 91 58.2
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 9.2e-18 94.0 127 46.5
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 9.2e-18 94.0 139 48.9
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 1.2e-17 93.6 163 44.2
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 2.1e-17 92.8 114 50.9
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 2.1e-17 92.8 147 44.2
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 2.1e-17 92.8 126 50.0
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 2.1e-17 92.8 136 47.8
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 2.1e-17 92.8 145 46.2
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 2.1e-17 92.8 91 53.8
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 2.1e-17 92.8 91 53.8
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 2.1e-17 92.8 91 52.7
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 3.5e-17 92.0 92 59.8
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 4.6e-17 91.7 85 57.6
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 6.0e-17 91.3 92 55.4
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 6.0e-17 91.3 92 55.4
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 1.7e-16 89.7 142 45.8
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 1.7e-16 89.7 142 45.8
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.7e-16 89.7 93 54.8
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 1.7e-16 89.7 121 50.4
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 3.9e-16 88.6 141 46.1
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 5.1e-16 88.2 124 49.2
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 5.1e-16 88.2 94 58.5
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 6.6e-16 87.8 143 46.9
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 6.6e-16 87.8 113 50.4
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 1.1e-15 87.0 144 45.1
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 1.1e-15 87.0 120 45.8
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.5e-15 86.7 142 45.1
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.5e-15 86.7 142 45.1
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 1.5e-15 86.7 132 45.5
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.9e-15 86.3 144 44.4
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 1.9e-15 86.3 123 45.5
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 1.9e-15 86.3 126 49.2
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 2.5e-15 85.9 137 45.3
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 3.3e-15 85.5 140 44.3
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 3.3e-15 85.5 140 44.3
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 4.3e-15 85.1 138 45.7
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 7.3e-15 84.3 89 51.7
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 9.6e-15 84.0 144 44.4
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 1.3e-14 83.6 148 45.9
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 1.3e-14 83.6 141 44.7
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 1.3e-14 83.6 141 44.7
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 1.6e-14 83.2 89 58.4
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 2.1e-14 82.8 134 46.3
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 4.8e-14 81.6 174 38.5
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 1.4e-13 80.1 132 46.2
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 1.8e-13 79.7 138 43.5
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.4e-13 79.3 135 43.7
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 4.0e-13 78.6 92 50.0
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 4.4e-12 75.1 143 38.5
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 3.8e-11 72.0 139 39.6
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 6.4e-11 71.2 131 37.4
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 1.9e-10 69.7 86 53.5
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 4.6e-09 65.1 143 37.1
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 4.6e-09 65.1 140 37.9
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 7.8e-09 64.3 74 50.0
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 7.8e-09 64.3 67 55.2
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.0e-08 63.9 97 47.4
Os01g0940600 Oryza sativa ssp. japonica HOM05D007435 ORTHO05D009338 5.1e-08 61.6 92 44.6
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 2.5e-07 59.3 107 40.2
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 5.6e-07 58.2 137 38.7
Zm00001eb141550 Zea mays HOM05D007435 ORTHO05D009338 6.2e-06 54.7 129 38.0


User provided reference genes

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