Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 1.5e-29 132.1 64 100.0
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 4.0e-22 107.5 56 91.1
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 5.2e-22 107.1 57 89.5
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-18 95.5 57 78.9
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.5e-18 94.4 57 77.2
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.3e-17 91.7 57 75.4
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 1.3e-12 75.9 54 66.7
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-11 72.0 57 63.2
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 5.4e-11 70.5 56 62.5
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 2.7e-10 68.2 56 58.9
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 4.6e-10 67.4 54 61.1
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 4.6e-10 67.4 54 61.1
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 4.6e-10 67.4 54 61.1
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 4.6e-10 67.4 54 61.1
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 4.6e-10 67.4 56 57.1
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 6.0e-10 67.0 54 61.1
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.0e-09 66.2 54 61.1
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.3e-09 65.9 56 57.1
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 3.0e-09 64.7 54 59.3
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 3.0e-09 64.7 54 59.3
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 3.0e-09 64.7 56 55.4
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 3.0e-09 64.7 56 60.7
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 3.0e-09 64.7 56 58.9
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 3.0e-09 64.7 54 59.3
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 3.0e-09 64.7 56 57.1
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 5.0e-09 63.9 56 57.1
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 5.0e-09 63.9 56 58.9
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 6.6e-09 63.5 56 57.1
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 6.6e-09 63.5 54 59.3
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 6.6e-09 63.5 51 58.8
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 8.6e-09 63.2 56 58.9
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 8.6e-09 63.2 56 57.1
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.6e-09 63.2 51 58.8
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.1e-08 62.8 55 56.4
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.1e-08 62.8 56 57.1
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.5e-08 62.4 56 58.9
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.9e-08 62.0 56 53.6
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.9e-08 62.0 56 55.4
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.9e-08 62.0 56 55.4
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.9e-08 62.0 56 58.9
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.5e-08 61.6 56 57.1
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.5e-08 61.6 51 56.9
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 2.5e-08 61.6 56 57.1
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 2.5e-08 61.6 56 57.1
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 2.5e-08 61.6 56 55.4
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 3.3e-08 61.2 56 57.1
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 4.3e-08 60.8 56 57.1
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 4.3e-08 60.8 56 55.4
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 4.3e-08 60.8 56 57.1
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.3e-08 60.8 56 57.1
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 5.6e-08 60.5 56 53.6
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 5.6e-08 60.5 56 53.6
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 5.6e-08 60.5 54 61.1
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 5.6e-08 60.5 56 53.6
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.6e-08 60.5 56 51.8
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 5.6e-08 60.5 56 57.1
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.3e-08 60.1 51 56.9
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 7.3e-08 60.1 56 55.4
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 7.3e-08 60.1 56 55.4
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 7.3e-08 60.1 56 55.4
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 9.5e-08 59.7 56 53.6
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.2e-07 59.3 57 54.4
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.2e-07 59.3 56 51.8
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.2e-07 59.3 56 55.4
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.6e-07 58.9 54 55.6
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.6e-07 58.9 56 55.4
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.6e-07 58.9 55 54.5
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.1e-07 58.5 56 53.6
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.1e-07 58.5 54 55.6
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.8e-07 58.2 56 50.0
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.8e-07 58.2 56 53.6
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.8e-07 58.2 54 55.6
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 2.8e-07 58.2 54 55.6
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 2.8e-07 58.2 56 51.8
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 2.8e-07 58.2 56 53.6
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.8e-07 58.2 55 52.7
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 2.8e-07 58.2 56 53.6
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 2.8e-07 58.2 57 50.9
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 3.6e-07 57.8 56 55.4
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 3.6e-07 57.8 56 53.6
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 3.6e-07 57.8 53 50.9
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 3.6e-07 57.8 54 55.6
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 3.6e-07 57.8 54 55.6
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.6e-07 57.8 54 55.6
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.7e-07 57.4 57 50.9
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.7e-07 57.4 54 53.7
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 6.2e-07 57.0 56 50.0
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 6.2e-07 57.0 53 50.9
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 6.2e-07 57.0 56 55.4
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 8.1e-07 56.6 56 50.0
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 8.1e-07 56.6 56 51.8
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.1e-06 56.2 54 50.0
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.1e-06 56.2 56 50.0
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.1e-06 56.2 53 50.9
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.1e-06 56.2 54 53.7
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.1e-06 56.2 55 54.5
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.4e-06 55.8 56 48.2
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.4e-06 55.8 56 53.6
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.4e-06 55.8 54 53.7
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 2.3e-06 55.1 54 53.7
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 2.3e-06 55.1 64 48.4
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 3.1e-06 54.7 44 59.1
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 3.1e-06 54.7 57 49.1
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.0e-06 54.3 56 51.8
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 5.2e-06 53.9 59 50.8
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.2e-06 53.9 54 53.7
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 8.9e-06 53.1 54 53.7
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.9e-06 53.1 56 46.4
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 8.9e-06 53.1 56 48.2


User provided reference genes

Program Settings