Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0317801 Rosa chinensis HOM05D001821 ORTHO05D001778 2.0e-59 232.3 118 100.0
FvH4_7g01620 Fragaria vesca HOM05D001821 ORTHO05D001778 1.5e-27 126.3 136 54.4
RcHm_v2.0_Chr1g0317891 Rosa chinensis HOM05D001821 ORTHO05D001778 4.9e-18 94.7 114 50.9
Haze_03131 Corylus avellana HOM05D001821 ORTHO05D001778 1.1e-17 93.6 125 48.0
FAN10G0418 Fragaria x ananassa HOM05D001821 ORTHO05D001778 1.1e-17 93.6 114 50.9
MD02G1302400 Malus domestica HOM05D001821 ORTHO05D001778 2.7e-16 89.0 114 48.2
Prupe.2G021800 Prunus persica HOM05D001821 ORTHO05D001778 2.7e-16 89.0 114 48.2
GSVIVG01032192001 Vitis vinifera HOM05D001821 ORTHO05D001778 3.5e-16 88.6 114 49.1
Manes.08G073802 Manihot esculenta HOM05D001821 ORTHO05D001778 1.0e-15 87.0 139 43.2
MD07G1021700 Malus domestica HOM05D001821 ORTHO05D001778 1.3e-15 86.7 114 47.4
QL04p009609 Quercus lobata HOM05D001821 ORTHO05D001778 1.3e-15 86.7 114 47.4
QL04p009716 Quercus lobata HOM05D001821 ORTHO05D001778 1.3e-15 86.7 114 47.4
Migut.B01272 Erythranthe guttata HOM05D001821 ORTHO05D001778 2.3e-15 85.9 94 55.3
Lj3g0019600 Lotus japonicus HOM05D001821 ORTHO05D001778 3.0e-15 85.5 114 47.4
Manes.07G010200 Manihot esculenta HOM05D001821 ORTHO05D001778 3.0e-15 85.5 94 56.4
Medtr3g032820 Medicago truncatula HOM05D001821 ORTHO05D001778 3.9e-15 85.1 61 68.9
Hma1.2p1_0269F.1_g107830 Hydrangea macrophylla HOM05D001821 ORTHO05D001778 5.1e-15 84.7 114 47.4
Dinv09313 Davidia involucrata HOM05D001821 ORTHO05D001778 6.7e-15 84.3 94 56.4
CiPaw.14G002500 Carya illinoinensis HOM05D001821 ORTHO05D001778 8.7e-15 84.0 114 46.5
Oeu006550.1 Olea europaea HOM05D001821 ORTHO05D001778 8.7e-15 84.0 94 55.3
Rhsim01G0127700 Rhododendron simsii HOM05D001821 ORTHO05D001778 8.7e-15 84.0 85 56.5
TAR636G1953 Trochodendron aralioides HOM05D001821 ORTHO05D001778 8.7e-15 84.0 113 46.9
Nn2g15233 Nelumbo nucifera HOM05D001821 ORTHO05D001778 1.5e-14 83.2 48 83.3
DCAR_029699 Daucus carota HOM05D001821 ORTHO05D001778 1.9e-14 82.8 55 74.5
FAN03G0083 Fragaria x ananassa HOM05D001821 ORTHO05D001778 1.9e-14 82.8 98 55.1
Medtr4g068770 Medicago truncatula HOM05D001821 ORTHO05D001778 1.9e-14 82.8 114 45.6
Nn2g15232 Nelumbo nucifera HOM05D001821 ORTHO05D001778 1.9e-14 82.8 55 74.5
TWI53G2139 Tripterygium wilfordii HOM05D001821 ORTHO05D001778 1.9e-14 82.8 94 55.3
CANSAT80G1531 Cannabis sativa HOM05D001821 ORTHO05D001778 2.5e-14 82.4 94 55.3
Duzib128G1238 Durio zibethinus HOM05D001821 ORTHO05D001778 2.5e-14 82.4 114 45.6
Os07g0656700 Oryza sativa ssp. japonica HOM05D001821 ORTHO05D001778 2.5e-14 82.4 94 54.3
SalBow6G2937 Salvia bowleyana HOM05D001821 ORTHO05D001778 2.5e-14 82.4 94 52.1
Thecc.05G218500 Theobroma cacao HOM05D001821 ORTHO05D001778 2.5e-14 82.4 114 44.7
Thhalv10015791m.g Eutrema salsugineum HOM05D001821 ORTHO05D001778 4.3e-14 81.6 98 50.0
FAN06G0114 Fragaria x ananassa HOM05D001821 ORTHO05D001778 4.3e-14 81.6 98 55.1
Glyma.15G276700 Glycine max HOM05D001821 ORTHO05D001778 5.6e-14 81.3 94 53.2
Aqoxy5G00271 Aquilegia oxysepala HOM05D001821 ORTHO05D001778 7.4e-14 80.9 55 74.5
MSTRG.5041 Avicennia marina HOM05D001821 ORTHO05D001778 7.4e-14 80.9 94 52.1
Psat5g211400 Pisum sativum HOM05D001821 ORTHO05D001778 7.4e-14 80.9 94 53.2
Duzib177G0788 Durio zibethinus HOM05D001821 ORTHO05D001778 9.6e-14 80.5 114 44.7
ECA248G2853 Erigeron canadensis HOM05D001821 ORTHO05D001778 9.6e-14 80.5 120 41.7
Eucgr.G03335 Eucalyptus grandis HOM05D001821 ORTHO05D001778 9.6e-14 80.5 94 55.3
TAR633G0208 Trochodendron aralioides HOM05D001821 ORTHO05D001778 9.6e-14 80.5 94 53.2
vmacro21194 Vaccinium macrocarpon HOM05D001821 ORTHO05D001778 9.6e-14 80.5 56 73.2
CsaV3_3G031980 Cucumis sativus L. HOM05D001821 ORTHO05D001778 1.3e-13 80.1 94 54.3
VMungo1080G1284 Vigna mungo HOM05D001821 ORTHO05D001778 1.3e-13 80.1 94 51.1
MSTRG.20563 Avicennia marina HOM05D001821 ORTHO05D001778 1.6e-13 79.7 94 52.1
unitig_0.g1395 Utricularia gibba HOM05D001821 ORTHO05D001778 1.6e-13 79.7 53 75.5
CSS0000699 Camellia sinensis var. sinensis HOM05D001821 ORTHO05D001778 2.1e-13 79.3 94 53.2
CSS0005244 Camellia sinensis var. sinensis HOM05D001821 ORTHO05D001778 2.1e-13 79.3 94 53.2
MELO3C023994.2 Cucumis melo HOM05D001821 ORTHO05D001778 2.1e-13 79.3 94 54.3
SalBow5G2539 Salvia bowleyana HOM05D001821 ORTHO05D001778 2.8e-13 79.0 94 53.2
HPP92_003278 Vanilla planifolia HOM05D001821 ORTHO05D001778 2.8e-13 79.0 94 53.2
ClCG10G012200 Citrullus lanatus HOM05D001821 ORTHO05D001778 3.7e-13 78.6 94 53.2
Sabra09G0042100 Salix brachista HOM05D001821 ORTHO05D001778 3.7e-13 78.6 94 51.1
Gohir.D13G161700 Gossypium hirsutum HOM05D001821 ORTHO05D001778 4.8e-13 78.2 94 50.0
Gorai.013G183700 Gossypium raimondii HOM05D001821 ORTHO05D001778 4.8e-13 78.2 94 50.0
Lalb_Chr01g0014861 Lupinus albus HOM05D001821 ORTHO05D001778 4.8e-13 78.2 94 51.1
Potri.009G057300 Populus trichocarpa HOM05D001821 ORTHO05D001778 4.8e-13 78.2 94 51.1
PGR031G0604 Punica granatum HOM05D001821 ORTHO05D001778 4.8e-13 78.2 94 53.2
CSS0019969 Camellia sinensis var. sinensis HOM05D001821 ORTHO05D001778 6.2e-13 77.8 94 52.1
Ca_14528_v3 Cicer arietinum L. HOM05D001821 ORTHO05D001778 6.2e-13 77.8 94 52.1
TPR.G28382 Trifolium pratense HOM05D000009 ORTHO05D003559 6.2e-13 77.8 94 52.1
CiPaw.13G007800 Carya illinoinensis HOM05D001821 ORTHO05D001778 8.1e-13 77.4 55 70.9
Phvul.005G023200 Phaseolus vulgaris HOM05D001821 ORTHO05D001778 8.1e-13 77.4 94 50.0
THA.LOC104819097 Tarenaya hassleriana HOM05D001821 ORTHO05D001778 1.4e-12 76.6 114 42.1
unitig_61.g26460 Utricularia gibba HOM05D001821 ORTHO05D001778 1.4e-12 76.6 94 52.1
Carub.0006s1190 Capsella rubella HOM05D001821 ORTHO05D001778 1.8e-12 76.3 106 45.3
AUR62009410 Chenopodium quinoa HOM05D001821 ORTHO05D001778 1.8e-12 76.3 94 50.0
AUR62023090 Chenopodium quinoa HOM05D001821 ORTHO05D001778 1.8e-12 76.3 94 50.0
ATR0626G232 Amborella trichopoda HOM05D001821 ORTHO05D001778 2.4e-12 75.9 94 52.1
Gohir.A13G156900 Gossypium hirsutum HOM05D001821 ORTHO05D001778 2.4e-12 75.9 94 48.9
Atru.chr11.2580 Acer truncatum HOM05D001821 ORTHO05D001778 3.1e-12 75.5 94 51.1
BcaC04g24263 Brassica carinata HOM05D001821 ORTHO05D001778 3.1e-12 75.5 94 50.0
BcaNung04190 Brassica carinata HOM05D001821 ORTHO05D001778 3.1e-12 75.5 94 51.1
C02p06390 Brassica napus HOM05D001821 ORTHO05D001778 3.1e-12 75.5 94 51.1
BolC2t06582H Brassica oleracea HOM05D001821 ORTHO05D001778 3.1e-12 75.5 94 51.1
BraA02t05185Z Brassica rapa HOM05D001821 ORTHO05D001778 3.1e-12 75.5 93 49.5
Cc02_g28490 Coffea canephora HOM05D001821 ORTHO05D001778 3.1e-12 75.5 94 51.1
Lj9A640T56 Lonicera japonica HOM05D001821 ORTHO05D001778 3.1e-12 75.5 94 52.1
PSO210G2797 Papaver somniferum HOM05D001821 ORTHO05D001778 4.0e-12 75.1 92 50.0
PSO832G0764 Papaver somniferum HOM05D001821 ORTHO05D001778 4.0e-12 75.1 92 50.0
AL6G24330 Arabidopsis lyrata HOM05D001821 ORTHO05D001778 5.3e-12 74.7 106 44.3
AT5G13720 Arabidopsis thaliana HOM05D001821 ORTHO05D001778 5.3e-12 74.7 106 44.3
Ciclev10032351m.g Citrus clementina HOM05D001821 ORTHO05D001778 5.3e-12 74.7 94 50.0
Sp6g30300 Schrenkiella parvula HOM05D001821 ORTHO05D001778 5.3e-12 74.7 94 51.1
Sed0024298 Sechium edule HOM05D001821 ORTHO05D001778 5.3e-12 74.7 94 52.1
Sc10g0000240 Simmondsia chinensis HOM05D001821 ORTHO05D001778 5.3e-12 74.7 113 42.5
BcaC04g19085 Brassica carinata HOM05D001821 ORTHO05D001778 6.9e-12 74.3 94 48.9
A10p24600 Brassica napus HOM05D001821 ORTHO05D001778 6.9e-12 74.3 94 48.9
BolC9t59185H Brassica oleracea HOM05D001821 ORTHO05D001778 6.9e-12 74.3 94 48.9
BraA10t44523Z Brassica rapa HOM05D001821 ORTHO05D001778 6.9e-12 74.3 94 48.9
A02p02130 Brassica napus HOM05D001821 ORTHO05D001778 9.0e-12 73.9 94 50.0
CAN.G219.71 Capsicum annuum HOM05D001821 ORTHO05D001778 9.0e-12 73.9 94 51.1
CDE06G0880 Ceratophyllum demersum HOM05D001821 ORTHO05D001778 9.0e-12 73.9 94 51.1
Nitab4.5_0004053g0090 Nicotiana tabacum HOM05D001821 ORTHO05D001778 9.0e-12 73.9 55 70.9
Zm00001eb329550 Zea mays HOM05D001821 ORTHO05D001778 1.5e-11 73.2 94 50.0
Nitab4.5_0000707g0080 Nicotiana tabacum HOM05D001821 ORTHO05D001778 2.0e-11 72.8 94 52.1
Os07g0656600 Oryza sativa ssp. japonica HOM05D001821 ORTHO05D001778 2.0e-11 72.8 102 51.0
Solyc01g087680.4 Solanum lycopersicum HOM05D001821 ORTHO05D001778 2.6e-11 72.4 94 51.1
Sopen01g034640 Solanum pennellii HOM05D001821 ORTHO05D001778 2.6e-11 72.4 94 51.1
Lsat_1_v5_gn_1_103461 Lactuca sativa HOM05D001821 ORTHO05D001778 3.4e-11 72.0 55 65.5
Hund19271 Selenicereus undatus HOM05D001821 ORTHO05D001778 3.4e-11 72.0 114 41.2
Peaxi162Scf00694g00317 Petunia axillaris HOM05D001821 ORTHO05D001778 4.5e-11 71.6 94 51.1
CARHR199710 Cardamine hirsuta HOM05D001821 ORTHO05D001778 5.8e-11 71.2 114 41.2
SEGI_36706 Sequoiadendron giganteum HOM05D001821 ORTHO05D001778 5.8e-11 71.2 55 65.5
EL10Ac2g04360 Beta vulgaris HOM05D001821 ORTHO05D001778 7.6e-11 70.9 94 46.8
Peaxi162Scf00694g00318 Petunia axillaris HOM05D001821 ORTHO05D001778 7.6e-11 70.9 94 50.0
Zm00001eb110630 Zea mays HOM05D001821 ORTHO05D001778 7.6e-11 70.9 94 48.9
C09p63380 Brassica napus HOM05D001821 ORTHO05D001778 9.9e-11 70.5 94 47.9
Lsat_1_v5_gn_1_103441 Lactuca sativa HOM05D001821 ORTHO05D001778 1.3e-10 70.1 88 45.5
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 1.7e-10 69.7 94 46.8
HanXRQChr01g0007741 Helianthus annuus HOM05D001821 ORTHO05D001778 2.2e-10 69.3 114 39.5
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 6.4e-10 67.8 47 66.0
arahy.Tifrunner.gnm1.ann1.85YNT0 Arachis hypogaea HOM05D001821 ORTHO05D001778 1.4e-09 66.6 94 46.8
arahy.Tifrunner.gnm1.ann1.UQ43TE Arachis hypogaea HOM05D001821 ORTHO05D001778 1.4e-09 66.6 94 46.8
Nitab4.5_0004053g0080 Nicotiana tabacum HOM05D001821 ORTHO05D001778 1.9e-09 66.2 94 46.8
Ah.10g038640 Amaranthus hybridus HOM05D001821 ORTHO05D001778 5.5e-09 64.7 94 44.7
Pp3c26_11180 Physcomitrium patens HOM05D001821 ORTHO05D001778 5.5e-09 64.7 91 46.2
Sopen01g034660 Solanum pennellii HOM05D001821 ORTHO05D001778 5.5e-09 64.7 94 46.8
Solyc01g087710.2 Solanum lycopersicum HOM05D001821 ORTHO05D001778 7.1e-09 64.3 94 46.8
CBR_g12790 Chara braunii HOM05D001821 ORTHO05D001778 9.3e-09 63.9 55 58.2
CARHR226180 Cardamine hirsuta HOM05D001821 ORTHO05D001778 1.2e-08 63.5 84 48.8
Medtr3g032100 Medicago truncatula HOM05D001821 ORTHO05D001778 1.6e-08 63.2 43 69.8
Thhalv10025996m.g Eutrema salsugineum HOM05D001821 ORTHO05D001778 3.5e-08 62.0 82 47.6
RcHm_v2.0_Chr1g0317851 Rosa chinensis HOM05D001821 ORTHO05D001778 3.5e-08 62.0 44 75.0
AL7G34770 Arabidopsis lyrata HOM05D001821 ORTHO05D001778 6.0e-08 61.2 84 47.6
Carub.0007s2184 Capsella rubella HOM05D001821 ORTHO05D001778 6.0e-08 61.2 84 47.6
BcaC09g51416 Brassica carinata HOM05D001821 ORTHO05D001778 7.9e-08 60.8 84 47.6
C01p13350 Brassica napus HOM05D001821 ORTHO05D001778 7.9e-08 60.8 84 47.6
BolC1t01310H Brassica oleracea HOM05D001821 ORTHO05D001778 7.9e-08 60.8 84 47.6
CAN.G219.74 Capsicum annuum HOM05D001821 ORTHO05D001778 1.0e-07 60.5 94 46.8
AT4G19390 Arabidopsis thaliana HOM05D001821 ORTHO05D001778 1.3e-07 60.1 84 46.4
BcaNung01782 Brassica carinata HOM05D001821 ORTHO05D001778 1.3e-07 60.1 82 47.6
Sp7g18010 Schrenkiella parvula HOM05D001821 ORTHO05D001778 1.3e-07 60.1 82 46.3
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 2.3e-07 59.3 44 61.4
CAN.G998.5 Capsicum annuum HOM05D001821 ORTHO05D001778 3.0e-07 58.9 48 60.4
HanXRQChr17g0537451 Helianthus annuus HOM05D001821 ORTHO05D001778 3.9e-07 58.5 48 62.5
PGSC0003DMG400029287 Solanum tuberosum HOM05D001821 ORTHO05D001778 3.9e-07 58.5 55 58.2
A01p11340 Brassica napus HOM05D001821 ORTHO05D001778 5.1e-07 58.2 84 46.4
BraA01t01078Z Brassica rapa HOM05D001821 ORTHO05D001778 5.1e-07 58.2 84 46.4
SEGI_16295 Sequoiadendron giganteum HOM05D001821 ORTHO05D001778 6.7e-07 57.8 59 55.9
Solyc08g075280.4 Solanum lycopersicum HOM05D001821 ORTHO05D001778 8.7e-07 57.4 48 60.4
Sopen08g023880 Solanum pennellii HOM05D001821 ORTHO05D001778 8.7e-07 57.4 48 60.4
Nitab4.5_0001214g0030 Nicotiana tabacum HOM05D001821 ORTHO05D001778 1.1e-06 57.0 48 60.4
PGR031G0310 Punica granatum HOM05D001821 ORTHO05D001778 1.1e-06 57.0 56 57.1
ATR0568G051 Amborella trichopoda HOM05D001821 ORTHO05D001778 1.5e-06 56.6 56 58.9
Lsat_1_v5_gn_3_19861 Lactuca sativa HOM05D001821 ORTHO05D001778 1.5e-06 56.6 48 58.3
CAN.G947.32 Capsicum annuum HOM05D001821 ORTHO05D001778 1.9e-06 56.2 55 56.4
Aa31LG6G1990 Aethionema arabicum HOM05D001821 ORTHO05D001778 2.5e-06 55.8 87 46.0
FvH4_5g24900 Fragaria vesca HOM05D001821 ORTHO05D001778 2.5e-06 55.8 55 56.4
FAN04G1732 Fragaria x ananassa HOM05D001821 ORTHO05D001778 2.5e-06 55.8 48 60.4
Peaxi162Scf00876g00315 Petunia axillaris HOM05D001821 ORTHO05D001778 3.3e-06 55.5 67 47.8
Zm00001eb266830 Zea mays HOM05D000325 ORTHO05D000583 3.3e-06 55.5 46 63.0
ECA246G3243 Erigeron canadensis HOM05D001821 ORTHO05D001778 4.3e-06 55.1 53 52.8
Gohir.D03G178100 Gossypium hirsutum HOM05D001821 ORTHO05D001778 4.3e-06 55.1 55 52.7
Gorai.003G187400 Gossypium raimondii HOM05D001821 ORTHO05D001778 4.3e-06 55.1 55 52.7
Peaxi162Scf00550g00428 Petunia axillaris HOM05D001821 ORTHO05D001778 4.3e-06 55.1 53 56.6
TWI60G0147 Tripterygium wilfordii HOM05D001821 ORTHO05D001778 4.3e-06 55.1 55 52.7
Gohir.A03G000010 Gossypium hirsutum HOM05D001821 ORTHO05D001778 5.6e-06 54.7 55 52.7
Nn1g09298 Nelumbo nucifera HOM05D001821 ORTHO05D001778 5.6e-06 54.7 53 56.6
Nitab4.5_0000943g0050 Nicotiana tabacum HOM05D001821 ORTHO05D001778 5.6e-06 54.7 55 54.5
Nitab4.5_0009213g0010 Nicotiana tabacum HOM05D001821 ORTHO05D001778 5.6e-06 54.7 55 54.5
SalBow4G0903 Salvia bowleyana HOM05D001821 ORTHO05D001778 5.6e-06 54.7 54 51.9
SMO353G0326 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 5.6e-06 54.7 62 53.2
SGA_v2.0_scaffold96G29113 Striga asiatica HOM05D001821 ORTHO05D001778 5.6e-06 54.7 54 53.7
THA.LOC104806201 Tarenaya hassleriana HOM05D001821 ORTHO05D001778 5.6e-06 54.7 82 43.9
RcHm_v2.0_Chr7g0215231 Rosa chinensis HOM05D001821 ORTHO05D001778 7.4e-06 54.3 55 56.4
TWI34G1790 Tripterygium wilfordii HOM05D001821 ORTHO05D001778 7.4e-06 54.3 55 50.9
TAR636G3380 Trochodendron aralioides HOM05D001821 ORTHO05D001778 7.4e-06 54.3 55 52.7
COL.COLO4_16739 Corchorus olitorius HOM05D001821 ORTHO05D001778 9.6e-06 53.9 55 54.5
Thecc.03G321000 Theobroma cacao HOM05D001821 ORTHO05D001778 9.6e-06 53.9 56 53.6


User provided reference genes

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