Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0316561 Rosa chinensis HOM05D001825 ORTHO05D010533 4.4e-78 295.4 274 100.0
RcHm_v2.0_Chr4g0434251 Rosa chinensis HOM05D001825 ORTHO05D010533 1.3e-77 293.9 274 99.6
RcHm_v2.0_Chr4g0401841 Rosa chinensis HOM05D001825 ORTHO05D010533 3.2e-76 289.3 274 98.2
RcHm_v2.0_Chr5g0039511 Rosa chinensis HOM05D001825 ORTHO05D010533 1.7e-74 283.5 277 69.0
RcHm_v2.0_Chr7g0238001 Rosa chinensis HOM05D001825 ORTHO05D010533 3.9e-74 282.3 278 63.7
RcHm_v2.0_Chr1g0328271 Rosa chinensis HOM05D001825 ORTHO05D010533 5.4e-60 235.3 249 83.9
HanXRQChr07g0188451 Helianthus annuus HOM05D000882 ORTHO05D001142 2.1e-43 180.3 120 76.7
SalBow8G2594 Salvia bowleyana HOM05D001825 ORTHO05D002336 1.0e-42 177.9 116 74.1
arahy.Tifrunner.gnm1.ann1.9V29BW Arachis hypogaea HOM05D001825 ORTHO05D002336 2.3e-42 176.8 116 75.0
Hma1.2p1_0030F.1_g018230 Hydrangea macrophylla HOM05D001825 ORTHO05D002336 1.5e-41 174.1 112 75.9
BolC7t44001H Brassica oleracea HOM05D001825 ORTHO05D002336 4.3e-41 172.6 111 76.6
A09p25040 Brassica napus HOM05D001825 ORTHO05D010533 9.6e-41 171.4 263 71.1
Haze_18656 Corylus avellana HOM05D001825 ORTHO05D002336 3.7e-40 169.5 164 58.5
BcaC06g35196 Brassica carinata HOM05D001825 ORTHO05D002336 2.6e-38 163.3 252 41.3
Ah.02g115330 Amaranthus hybridus HOM05D001825 ORTHO05D002336 1.0e-34 151.4 139 58.3
BraA09t38092Z Brassica rapa HOM05D001825 ORTHO05D010533 1.0e-34 151.4 103 74.8
BolC7t42385H Brassica oleracea HOM05D001825 ORTHO05D002336 1.9e-33 147.1 110 68.2
Carub.0135s0002 Capsella rubella HOM05D001825 ORTHO05D002336 4.3e-33 146.0 78 89.7
ECA234G2809 Erigeron canadensis HOM05D001825 ORTHO05D010533 7.4e-33 145.2 112 65.2
arahy.Tifrunner.gnm1.ann1.I3PUBY Arachis hypogaea HOM05D001825 ORTHO05D002336 1.8e-31 140.6 103 68.9
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 1.7e-29 134.0 80 77.5
BraA03t12003Z Brassica rapa HOM05D001825 ORTHO05D010533 1.7e-29 134.0 80 77.5
BolC9t56056H Brassica oleracea HOM05D001825 ORTHO05D010533 2.9e-29 133.3 261 71.6
A07p43620 Brassica napus HOM05D001825 ORTHO05D010533 4.9e-29 132.5 78 78.2
A03p65620 Brassica napus HOM05D001825 ORTHO05D010533 1.1e-28 131.3 78 76.9
BraA03t15615Z Brassica rapa HOM05D001825 ORTHO05D010533 1.1e-28 131.3 78 76.9
SMO144G0049 Selaginella moellendorffii HOM05D001825 ORTHO05D002336 2.5e-28 130.2 91 69.2
C05p24940 Brassica napus HOM05D001825 ORTHO05D004551 4.2e-28 129.4 77 76.6
CAN.G438.129 Capsicum annuum HOM05D001825 ORTHO05D002336 4.2e-28 129.4 120 52.5
BcaC04g19385 Brassica carinata HOM05D001825 ORTHO05D010533 2.1e-27 127.1 78 74.4
C09p56270 Brassica napus HOM05D001825 ORTHO05D010533 2.1e-27 127.1 78 74.4
BolC9t58496H Brassica oleracea HOM05D001825 ORTHO05D010533 2.1e-27 127.1 78 74.4
BolC7t44006H Brassica oleracea HOM05D001825 ORTHO05D010533 6.7e-26 122.1 268 67.9
A07p12640 Brassica napus HOM05D001825 ORTHO05D002336 1.3e-24 117.9 73 78.1
BraA07t29042Z Brassica rapa HOM05D001825 ORTHO05D002336 1.3e-24 117.9 73 78.1
C09p32040 Brassica napus HOM05D001825 ORTHO05D010533 6.3e-24 115.5 59 93.2
Manes.14G099600 Manihot esculenta HOM05D001825 ORTHO05D002336 1.4e-23 114.4 65 87.7
PGR119G2353 Punica granatum HOM05D001825 ORTHO05D002336 1.4e-23 114.4 65 84.6
BraA08t34646Z Brassica rapa HOM05D001825 ORTHO05D002336 2.0e-22 110.5 69 76.8
DCAR_023674 Daucus carota HOM05D001825 ORTHO05D002336 1.0e-21 108.2 102 57.8
Lalb_Chr10g0099901 Lupinus albus HOM05D001825 ORTHO05D010533 1.0e-21 108.2 74 71.6
PRCOL_00003010 Prasinoderma coloniale HOM05D001825 ORTHO05D002336 2.9e-21 106.7 113 44.2
C03p72890 Brassica napus HOM05D001825 ORTHO05D010533 8.5e-21 105.1 68 75.0
SEGI_36261 Sequoiadendron giganteum HOM05D001825 ORTHO05D010533 1.1e-20 104.8 80 67.5
BcaC06g33955 Brassica carinata HOM05D001825 ORTHO05D010533 1.4e-20 104.4 58 84.5
C07p34700 Brassica napus HOM05D001825 ORTHO05D002336 1.4e-20 104.4 57 86.0
ClCG05G022880 Citrullus lanatus HOM05D001825 ORTHO05D002336 1.9e-20 104.0 56 85.7
A06p42500 Brassica napus HOM05D001825 ORTHO05D002336 4.2e-20 102.8 55 90.9
BraA06t27163Z Brassica rapa HOM05D001825 ORTHO05D002336 4.2e-20 102.8 55 90.9
SGA_v2.0_scaffold36G14534 Striga asiatica HOM05D001825 ORTHO05D002336 4.6e-19 99.4 57 77.2
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 6.1e-19 99.0 70 67.1
Psat2g126080 Pisum sativum HOM05D001085 ORTHO05D010533 1.0e-18 98.2 171 38.6
A09p39520 Brassica napus HOM05D001825 ORTHO05D004551 8.8e-18 95.1 56 76.8
AUR62043748 Chenopodium quinoa HOM05D001825 ORTHO05D010533 1.9e-17 94.0 264 31.4
Solyc05g045950.3 Solanum lycopersicum HOM05D001825 ORTHO05D010533 4.3e-17 92.8 53 81.1
BcaB03g12018 Brassica carinata HOM05D001825 ORTHO05D010533 8.2e-16 88.6 54 79.6
SalBow8G4326 Salvia bowleyana HOM05D001825 ORTHO05D002336 1.8e-15 87.4 49 85.7
SEGI_11745 Sequoiadendron giganteum HOM05D001825 ORTHO05D010533 1.8e-15 87.4 51 84.3
Lj3C1018T2 Lonicera japonica HOM05D001825 ORTHO05D002336 1.2e-14 84.7 46 91.3
Psat2g126000 Pisum sativum HOM05D001085 ORTHO05D000895 1.2e-14 84.7 49 83.7
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.2e-14 84.7 49 81.6
HanXRQChr12g0384181 Helianthus annuus HOM05D001825 ORTHO05D010533 1.5e-14 84.3 95 52.6
MCO15G645 Micromonas commoda HOM05D001825 ORTHO05D002336 1.5e-14 84.3 105 41.9
C02p45380 Brassica napus HOM05D001825 ORTHO05D010533 3.4e-14 83.2 66 57.6
AUR62001116 Chenopodium quinoa HOM05D001825 ORTHO05D010533 1.3e-13 81.3 264 64.0
Glyma.10G070400 Glycine max HOM05D001825 ORTHO05D010533 1.7e-13 80.9 48 83.3
SEGI_15353 Sequoiadendron giganteum HOM05D001825 ORTHO05D010533 2.2e-13 80.5 44 86.4
MD01G1132700 Malus domestica HOM05D001825 ORTHO05D010533 2.9e-13 80.1 50 78.0
BcaC03g16707 Brassica carinata HOM05D001825 ORTHO05D010533 8.5e-13 78.6 64 57.8
Lsat_1_v5_gn_7_69820 Lactuca sativa HOM05D001825 ORTHO05D010533 4.7e-11 72.8 45 80.0
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 1.0e-10 71.6 48 77.1
Haze_26341 Corylus avellana HOM05D001825 ORTHO05D002336 6.7e-10 68.9 78 41.0
Lsat_1_v5_gn_4_55740 Lactuca sativa HOM05D001825 ORTHO05D010533 2.0e-09 67.4 48 68.8
CDE01G0229 Ceratophyllum demersum HOM05D001825 ORTHO05D002336 9.7e-09 65.1 34 79.4
PGSC0003DMG403015876 Solanum tuberosum HOM05D001825 ORTHO05D010533 1.4e-07 61.2 34 88.2
SMO358G0670 Selaginella moellendorffii HOM05D001825 ORTHO05D002336 5.3e-07 59.3 34 79.4
AUR62044459 Chenopodium quinoa HOM05D001825 ORTHO05D010533 9.1e-07 58.5 120 35.0
ECA234G1341 Erigeron canadensis HOM05D009345 ORTHO05D012863 1.5e-06 57.8 47 70.2
BcaC05g26446 Brassica carinata HOM05D001825 ORTHO05D010533 2.6e-06 57.0 27 85.2


User provided reference genes

Program Settings