Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0316221 Rosa chinensis HOM05D015504 ORTHO05D003879 8.1e-253 877.1 622 100.0
RcHm_v2.0_Chr7g0242941 Rosa chinensis HOM05D015504 ORTHO05D003879 8.1e-128 461.8 244 94.7
RcHm_v2.0_Chr6g0272091 Rosa chinensis HOM05D000029 ORTHO05D003879 4.7e-59 233.4 174 69.0
Prupe.8G056100 Prunus persica HOM05D000029 ORTHO05D003879 8.2e-56 222.6 173 65.9
FvH4_5g16590 Fragaria vesca HOM05D000029 ORTHO05D003879 7.0e-55 219.5 175 66.3
FAN27G1538 Fragaria x ananassa HOM05D000029 ORTHO05D003879 1.2e-54 218.8 177 68.4
FvH4_2g12120 Fragaria vesca HOM05D000029 ORTHO05D003879 1.7e-53 214.9 174 67.8
FAN24G0359 Fragaria x ananassa HOM05D000029 ORTHO05D003879 1.7e-53 214.9 174 67.8
Prupe.8G051700 Prunus persica HOM05D000029 ORTHO05D003879 4.2e-52 210.3 150 72.7
RcHm_v2.0_Chr6g0272061 Rosa chinensis HOM05D000029 ORTHO05D003879 9.4e-52 209.1 173 64.7
RcHm_v2.0_Chr6g0276131 Rosa chinensis HOM05D015504 ORTHO05D003879 1.1e-47 195.7 117 88.0
MD10G1047300 Malus domestica HOM05D000029 ORTHO05D003879 3.1e-47 194.1 182 59.3
FAN08G2074 Fragaria x ananassa HOM05D000029 ORTHO05D003879 2.8e-43 181.0 138 68.8
MD05G1041000 Malus domestica HOM05D000029 ORTHO05D003879 6.1e-43 179.9 181 56.4
RcHm_v2.0_Chr4g0418911 Rosa chinensis HOM05D015504 ORTHO05D003879 8.9e-42 176.0 106 77.4
RcHm_v2.0_Chr4g0428241 Rosa chinensis HOM05D015504 ORTHO05D003879 6.3e-40 169.9 106 75.5
MD10G1047000 Malus domestica HOM05D000029 ORTHO05D003879 1.1e-39 169.1 139 62.6
CSS0047735 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.4e-39 168.7 175 50.9
Potri.019G084800 Populus trichocarpa HOM05D000029 ORTHO05D003879 5.4e-39 166.8 172 54.7
Atru.chr13.1823 Acer truncatum HOM05D000029 ORTHO05D003879 2.0e-38 164.9 163 53.4
TWI34G0629 Tripterygium wilfordii HOM05D000029 ORTHO05D003879 2.7e-38 164.5 164 51.8
CANSAT64G2826 Cannabis sativa HOM05D000029 ORTHO05D003879 4.5e-38 163.7 169 50.9
ClCG09G010450 Citrullus lanatus HOM05D000029 ORTHO05D003879 4.5e-38 163.7 160 55.6
Dinv08018 Davidia involucrata HOM05D000029 ORTHO05D003879 2.9e-37 161.0 164 54.9
Atru.chr13.1802 Acer truncatum HOM05D000029 ORTHO05D003879 3.8e-37 160.6 162 51.9
CiPaw.15G082500 Carya illinoinensis HOM05D000029 ORTHO05D003879 8.6e-37 159.5 161 55.9
arahy.Tifrunner.gnm1.ann1.TX2FLU Arachis hypogaea HOM05D000029 ORTHO05D003879 1.5e-36 158.7 169 51.5
Ciclev10000182m.g Citrus clementina HOM05D000029 ORTHO05D003879 1.5e-36 158.7 159 51.6
CSS0001053 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.9e-36 158.3 177 48.6
CSS0010817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.9e-36 158.3 177 48.6
CSS0010851 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.9e-36 158.3 177 48.6
Gohir.D09G114100 Gossypium hirsutum HOM05D000029 ORTHO05D003879 1.9e-36 158.3 157 52.2
Gorai.006G131800 Gossypium raimondii HOM05D000029 ORTHO05D003879 1.9e-36 158.3 157 52.2
Atru.chr13.1828 Acer truncatum HOM05D000029 ORTHO05D003879 3.3e-36 157.5 136 55.9
Lalb_Chr19g0129791 Lupinus albus HOM05D000029 ORTHO05D003879 3.3e-36 157.5 169 50.3
Atru.chr13.1801 Acer truncatum HOM05D000029 ORTHO05D003879 4.3e-36 157.1 136 58.1
arahy.Tifrunner.gnm1.ann1.BISG48 Arachis hypogaea HOM05D000029 ORTHO05D003879 4.3e-36 157.1 169 52.1
Actinidia23329 Actinidia chinensis HOM05D000029 ORTHO05D003879 5.6e-36 156.8 155 53.5
CiPaw.15G082400 Carya illinoinensis HOM05D000029 ORTHO05D003879 5.6e-36 156.8 161 55.9
Gohir.A09G117200 Gossypium hirsutum HOM05D000029 ORTHO05D003879 5.6e-36 156.8 157 52.2
Gohir.A09G117301 Gossypium hirsutum HOM05D000029 ORTHO05D003879 5.6e-36 156.8 157 52.2
Lj4A516T35 Lonicera japonica HOM05D000029 ORTHO05D003879 5.6e-36 156.8 150 52.0
vmacro05722 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 9.5e-36 156.0 176 50.0
Lj4C507T2 Lonicera japonica HOM05D000029 ORTHO05D003879 2.8e-35 154.5 150 51.3
Haze_17910 Corylus avellana HOM05D000029 ORTHO05D003879 8.0e-35 152.9 132 59.1
Manes.02G190900 Manihot esculenta HOM05D000029 ORTHO05D003879 8.0e-35 152.9 170 52.9
CSS0006375 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.0e-34 152.5 177 48.6
MELO3C023665.2 Cucumis melo HOM05D000029 ORTHO05D003879 1.4e-34 152.1 160 53.8
Phvul.004G085076 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 1.8e-34 151.8 171 52.0
Psat0s2229g0040 Pisum sativum HOM05D000029 ORTHO05D003879 1.8e-34 151.8 171 51.5
Rhsim10G0034100 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.8e-34 151.8 171 49.7
Glyma.16G156200 Glycine max HOM05D000029 ORTHO05D003879 2.3e-34 151.4 171 50.9
QL02p034028 Quercus lobata HOM05D000029 ORTHO05D003879 2.3e-34 151.4 136 61.0
vmacro08239 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 2.3e-34 151.4 175 48.0
Phvul.004G084688 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 3.1e-34 151.0 173 52.6
CSS0046817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 4.0e-34 150.6 177 48.6
CsaV3_7G024110 Cucumis sativus L. HOM05D000029 ORTHO05D003879 4.0e-34 150.6 160 53.1
vmacro05721 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 4.0e-34 150.6 165 48.5
Atru.chr13.1800 Acer truncatum HOM05D000029 ORTHO05D003879 6.8e-34 149.8 136 54.4
Glyma.16G156100 Glycine max HOM05D000029 ORTHO05D003879 6.8e-34 149.8 171 49.7
vmacro12494 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 6.8e-34 149.8 171 47.4
Nitab4.5_0010911g0020 Nicotiana tabacum HOM05D000029 ORTHO05D003879 8.9e-34 149.4 163 46.0
Manes.18G100200 Manihot esculenta HOM05D000029 ORTHO05D003879 4.4e-33 147.1 172 49.4
RhsimUnG0063000 Rhododendron simsii HOM05D000029 ORTHO05D003879 4.4e-33 147.1 171 48.5
Potri.013G114200 Populus trichocarpa HOM05D000029 ORTHO05D003879 5.8e-33 146.7 160 51.9
vmacro22381 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 1.7e-32 145.2 170 45.3
Sc01g0001730 Simmondsia chinensis HOM05D000029 ORTHO05D003879 4.9e-32 143.7 160 49.4
CAN.G342.4 Capsicum annuum HOM05D000029 ORTHO05D003879 8.3e-32 142.9 152 48.0
Lj5g0012115 Lotus japonicus HOM05D000029 ORTHO05D003879 8.3e-32 142.9 165 50.3
Nitab4.5_0000560g0040 Nicotiana tabacum HOM05D000029 ORTHO05D003879 1.1e-31 142.5 163 44.8
Sabra19G0095900 Salix brachista HOM05D000029 ORTHO05D003879 3.2e-31 141.0 135 57.0
Sopen11g009160 Solanum pennellii HOM05D000029 ORTHO05D003879 3.2e-31 141.0 159 45.9
TPR.G8832 Trifolium pratense HOM05D000029 ORTHO05D003879 3.2e-31 141.0 171 49.1
Cc00_g03680 Coffea canephora HOM05D000029 ORTHO05D003879 5.4e-31 140.2 174 46.6
Sed0023164 Sechium edule HOM05D000029 ORTHO05D003879 9.2e-31 139.4 163 49.1
Rhsim10G0041900 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.2e-30 139.0 167 45.5
Sabra19G0096000 Salix brachista HOM05D000029 ORTHO05D003879 1.2e-30 139.0 135 52.6
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.6e-30 138.7 135 54.8
Rhsim10G0041300 Rhododendron simsii HOM05D000029 ORTHO05D003879 2.0e-30 138.3 169 46.7
Haze_17915 Corylus avellana HOM05D000029 ORTHO05D003879 2.7e-30 137.9 132 54.5
PGSC0003DMG400009238 Solanum tuberosum HOM05D000029 ORTHO05D003879 3.5e-30 137.5 125 52.8
Cfa018196 Carpinus fangiana HOM05D000029 ORTHO05D003879 4.6e-30 137.1 133 57.9
Eucgr.F04133 Eucalyptus grandis HOM05D000029 ORTHO05D003879 6.0e-30 136.7 135 51.9
A08p08250 Brassica napus HOM05D000029 ORTHO05D003879 7.8e-30 136.3 155 49.0
BraA08t32843Z Brassica rapa HOM05D000029 ORTHO05D003879 7.8e-30 136.3 155 49.0
Lalb_Chr03g0035901 Lupinus albus HOM05D000029 ORTHO05D003879 2.3e-29 134.8 170 47.1
SalBow6G0200 Salvia bowleyana HOM05D000029 ORTHO05D003879 2.3e-29 134.8 174 44.8
SalBow6G0778 Salvia bowleyana HOM05D000029 ORTHO05D003879 2.3e-29 134.8 174 44.8
PGR102G0708 Punica granatum HOM05D000029 ORTHO05D003879 3.0e-29 134.4 170 47.6
TAR628G0281 Trochodendron aralioides HOM05D000029 ORTHO05D003879 3.0e-29 134.4 168 48.2
EL10Ac1g00073 Beta vulgaris HOM05D000029 ORTHO05D003879 3.9e-29 134.0 152 48.7
Cfa018200 Carpinus fangiana HOM05D000029 ORTHO05D003879 3.9e-29 134.0 136 56.6
MSTRG.22443 Avicennia marina HOM05D000029 ORTHO05D003879 5.0e-29 133.7 174 42.5
Potri.019G084700 Populus trichocarpa HOM05D000029 ORTHO05D003879 6.6e-29 133.3 168 45.8
Ca_10609_v3 Cicer arietinum L. HOM05D000029 ORTHO05D003879 8.6e-29 132.9 136 54.4
BcaB04g17876 Brassica carinata HOM05D000029 ORTHO05D003879 1.1e-28 132.5 164 49.4
SalBow6G0392 Salvia bowleyana HOM05D000029 ORTHO05D003879 1.1e-28 132.5 168 45.2
CDE06G2283 Ceratophyllum demersum HOM05D000029 ORTHO05D003879 1.5e-28 132.1 161 48.4
AL1G48980 Arabidopsis lyrata HOM05D000029 ORTHO05D003879 1.9e-28 131.7 154 49.4
Solyc11g017280.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 2.5e-28 131.3 125 51.2
SalBow6G2947 Salvia bowleyana HOM05D000029 ORTHO05D003879 3.3e-28 131.0 160 46.2
SalBow6G4183 Salvia bowleyana HOM05D000029 ORTHO05D003879 3.3e-28 131.0 154 46.8
SalBow6G7126 Salvia bowleyana HOM05D000029 ORTHO05D003879 3.3e-28 131.0 168 44.6
BolC8t47856H Brassica oleracea HOM05D000029 ORTHO05D003879 4.3e-28 130.6 154 48.7
Eucgr.L01480 Eucalyptus grandis HOM05D000029 ORTHO05D003879 4.3e-28 130.6 115 54.8
RhsimUnG0063100 Rhododendron simsii HOM05D000029 ORTHO05D003879 5.6e-28 130.2 136 49.3
Thecc.08G181500 Theobroma cacao HOM05D000029 ORTHO05D003879 5.6e-28 130.2 138 50.0
Dinv41693 Davidia involucrata HOM05D000029 ORTHO05D003879 7.3e-28 129.8 179 45.8
Rhsim10G0034000 Rhododendron simsii HOM05D000029 ORTHO05D003879 7.3e-28 129.8 139 53.2
Duzib177G1182 Durio zibethinus HOM05D000029 ORTHO05D003879 9.5e-28 129.4 163 41.7
Nitab4.5_0010911g0010 Nicotiana tabacum HOM05D000029 ORTHO05D003879 1.2e-27 129.0 126 49.2
Rhsim06G0097000 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.6e-27 128.6 171 43.9
Sabra19G0096100 Salix brachista HOM05D000029 ORTHO05D003879 1.6e-27 128.6 135 50.4
Thhalv10006707m.g Eutrema salsugineum HOM05D000029 ORTHO05D003879 3.6e-27 127.5 165 46.1
Sp1g29610 Schrenkiella parvula HOM05D000029 ORTHO05D003879 6.2e-27 126.7 154 48.7
Nitab4.5_0000560g0090 Nicotiana tabacum HOM05D000029 ORTHO05D003879 1.4e-26 125.6 153 45.8
AT1G34420 Arabidopsis thaliana HOM05D000029 ORTHO05D003879 1.8e-26 125.2 154 47.4
Carub.0001s3255 Capsella rubella HOM05D000029 ORTHO05D003879 3.1e-26 124.4 168 45.2
Lsat_1_v5_gn_1_10521 Lactuca sativa HOM05D000029 ORTHO05D003879 6.8e-26 123.2 174 44.3
MSTRG.1520 Avicennia marina HOM05D000029 ORTHO05D003879 8.9e-26 122.9 158 42.4
Peaxi162Scf00310g00823 Petunia axillaris HOM05D000029 ORTHO05D003879 8.9e-26 122.9 172 41.3
Solyc11g017270.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 2.0e-25 121.7 159 41.5
Nn1g05578 Nelumbo nucifera HOM05D000029 ORTHO05D003879 3.4e-25 120.9 164 45.7
BcaC07g37539 Brassica carinata HOM05D000029 ORTHO05D003879 5.8e-25 120.2 128 50.0
TAR376G0621 Trochodendron aralioides HOM05D000029 ORTHO05D003879 1.7e-24 118.6 169 43.2
AUR62023574 Chenopodium quinoa HOM05D000029 ORTHO05D003879 3.7e-24 117.5 124 50.8
AUR62004657 Chenopodium quinoa HOM05D000029 ORTHO05D003879 4.9e-24 117.1 116 52.6
Duzib116G0477 Durio zibethinus HOM05D000029 ORTHO05D003879 4.9e-24 117.1 140 45.0
MBI17_g15289_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 6.4e-24 116.7 167 41.3
Cc00_g11880 Coffea canephora HOM05D000029 ORTHO05D003879 1.1e-23 115.9 122 49.2
Hund27081 Selenicereus undatus HOM05D000029 ORTHO05D003879 2.4e-23 114.8 134 47.8
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 7.0e-23 113.2 156 45.5
Medtr1g096270 Medicago truncatula HOM05D000029 ORTHO05D003879 2.1e-22 111.7 171 40.4
PSO782G3570 Papaver somniferum HOM05D000029 ORTHO05D003879 2.7e-22 111.3 167 43.7
Migut.N03343 Erythranthe guttata HOM05D000029 ORTHO05D003879 3.5e-22 110.9 172 37.8
Nn5g27753 Nelumbo nucifera HOM05D000029 ORTHO05D003879 2.3e-21 108.2 171 41.5
MBI09_g08446_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 8.6e-21 106.3 169 35.5
HanXRQChr04g0107431 Helianthus annuus HOM05D000029 ORTHO05D003879 1.9e-20 105.1 150 44.7
ATR0152G022 Amborella trichopoda HOM05D000029 ORTHO05D003879 2.5e-20 104.8 164 39.0
HanXRQChr04g0107461 Helianthus annuus HOM05D000029 ORTHO05D003879 7.3e-20 103.2 164 43.9
THA.LOC104806785 Tarenaya hassleriana HOM05D000029 ORTHO05D003879 9.5e-20 102.8 167 38.9
Eucgr.F04130 Eucalyptus grandis HOM05D000029 ORTHO05D003879 3.6e-19 100.9 137 43.1
PSO170G5730 Papaver somniferum HOM05D000029 ORTHO05D003879 8.9e-18 96.3 170 40.0
RcHm_v2.0_Chr1g0316231 Rosa chinensis HOM05D062739 ORTHO05D003879 3.4e-17 94.4 136 45.6
VMungo0464G0087 Vigna mungo HOM05D000029 ORTHO05D003879 9.9e-17 92.8 136 44.1
RcHm_v2.0_Chr1g0316271 Rosa chinensis HOM05D062739 ORTHO05D003879 2.2e-16 91.7 136 44.9
Os12g0182300 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D003879 3.7e-16 90.9 147 37.4
SGA_v2.0_scaffold149G36603 Striga asiatica HOM05D000029 ORTHO05D003879 6.4e-16 90.1 155 35.5
CARHR033850 Cardamine hirsuta HOM05D000029 ORTHO05D003879 1.4e-15 89.0 104 46.2
Oeu030006.1 Olea europaea HOM05D016129 ORTHO05D003798 1.4e-15 89.0 159 35.8
HanXRQChr04g0107451 Helianthus annuus HOM05D000029 ORTHO05D003879 4.1e-15 87.4 167 40.1
PSO170G3318 Papaver somniferum HOM05D000029 ORTHO05D003879 5.4e-15 87.0 84 54.8
RcHm_v2.0_Chr6g0256141 Rosa chinensis HOM05D015504 ORTHO05D003879 2.1e-14 85.1 51 84.3
RcHm_v2.0_Chr6g0256231 Rosa chinensis HOM05D015504 ORTHO05D003879 2.1e-14 85.1 51 84.3
RcHm_v2.0_Chr6g0256321 Rosa chinensis HOM05D015504 ORTHO05D003879 1.3e-13 82.4 58 74.1
Zm00001eb408490 Zea mays HOM05D000029 ORTHO05D003879 3.9e-13 80.9 143 35.7
VMungo0464G0008 Vigna mungo HOM05D000029 ORTHO05D003879 5.1e-13 80.5 69 58.0
SEGI_14999 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.5e-12 79.0 138 34.8
EL10As1g23044 Beta vulgaris HOM05D000029 ORTHO05D003879 7.3e-12 76.6 155 36.1
PSO782G2115 Papaver somniferum HOM05D000029 ORTHO05D003879 1.5e-09 68.9 70 54.3
Actinidia26071 Actinidia chinensis HOM05D000029 ORTHO05D001072 7.6e-09 66.6 162 30.2
Eucgr.C03330 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.3e-08 65.9 137 35.0
ECA238G3462 Erigeron canadensis HOM05D000517 ORTHO05D000751 8.4e-08 63.2 185 29.2
SEGI_36696 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 8.4e-08 63.2 143 31.5
RcHm_v2.0_Chr1g0328621 Rosa chinensis HOM05D016905 ORTHO05D003879 1.1e-07 62.8 178 36.0
AUR62010119 Chenopodium quinoa HOM05D000517 ORTHO05D000751 2.4e-07 61.6 192 29.7
C08p43980 Brassica napus HOM05D001506 ORTHO05D000455 7.1e-07 60.1 114 36.8
vmacro05783 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 9.2e-07 59.7 54 50.0
ClCG11G015100 Citrullus lanatus HOM05D000029 ORTHO05D008509 1.2e-06 59.3 164 30.5
Actinidia06477 Actinidia chinensis HOM05D000517 ORTHO05D000751 3.5e-06 57.8 192 28.6
BcaC07g41431 Brassica carinata HOM05D001506 ORTHO05D000455 4.6e-06 57.4 163 31.3
Eucgr.E04267 Eucalyptus grandis HOM05D000311 ORTHO05D000183 4.6e-06 57.4 144 30.6
Medtr4g130920 Medicago truncatula HOM05D000094 ORTHO05D004969 4.6e-06 57.4 106 35.8
AUR62023560 Chenopodium quinoa HOM05D000029 ORTHO05D006810 6.0e-06 57.0 153 31.4
Medtr1g052425 Medicago truncatula HOM05D000033 ORTHO05D007591 6.0e-06 57.0 169 31.4
Nitab4.5_0006879g0020 Nicotiana tabacum HOM05D000094 ORTHO05D004969 6.0e-06 57.0 106 33.0
Zm00001eb408500 Zea mays HOM05D000029 ORTHO05D003879 6.0e-06 57.0 119 32.8
Dinv41383 Davidia involucrata HOM05D000094 ORTHO05D004969 7.8e-06 56.6 108 37.0


User provided reference genes

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