Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 5.1e-110 401.4 247 100.0
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 6.7e-102 374.4 247 89.5
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.2e-100 369.4 249 88.8
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 7.2e-96 354.4 248 84.7
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 1.0e-94 350.5 180 93.3
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 1.7e-92 343.2 248 85.9
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 3.1e-91 339.0 247 79.4
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 7.7e-90 334.3 247 82.6
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 7.7e-90 334.3 180 86.1
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 2.9e-89 332.4 247 77.3
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.8e-89 332.0 301 62.5
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 3.8e-89 332.0 250 84.0
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 6.5e-89 331.3 249 85.1
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 6.5e-89 331.3 246 76.4
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 1.1e-88 330.5 247 82.6
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 9.4e-88 327.4 249 81.1
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.2e-87 327.0 170 94.7
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 1.6e-87 326.6 180 85.6
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.6e-87 326.6 169 95.3
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 3.6e-87 325.5 247 74.5
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 4.7e-87 325.1 247 66.8
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 4.7e-87 325.1 180 85.0
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 4.7e-87 325.1 247 77.7
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 6.1e-87 324.7 249 73.9
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 1.0e-86 323.9 180 86.1
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.8e-86 323.2 247 72.5
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 1.8e-86 323.2 247 80.6
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 2.3e-86 322.8 246 80.9
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 2.3e-86 322.8 247 76.9
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 2.3e-86 322.8 249 73.1
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 3.0e-86 322.4 180 84.4
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 5.2e-86 321.6 180 83.3
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 6.8e-86 321.2 180 85.6
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 8.8e-86 320.9 178 84.8
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 1.2e-85 320.5 250 78.8
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 2.0e-85 319.7 247 73.7
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 2.6e-85 319.3 245 71.0
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 2.6e-85 319.3 246 78.5
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 2.6e-85 319.3 247 73.3
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 3.4e-85 318.9 180 83.9
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 4.4e-85 318.5 180 82.2
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 4.4e-85 318.5 180 83.3
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 5.7e-85 318.2 178 84.3
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 7.5e-85 317.8 180 82.8
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 9.8e-85 317.4 245 84.1
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 3.7e-84 315.5 278 68.0
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 3.7e-84 315.5 180 82.8
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 4.9e-84 315.1 180 81.7
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 6.3e-84 314.7 246 76.0
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 6.3e-84 314.7 256 73.8
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 1.1e-83 313.9 180 82.2
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 1.4e-83 313.5 180 81.7
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 2.4e-83 312.8 246 77.2
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 7.0e-83 311.2 180 80.6
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 7.0e-83 311.2 246 77.6
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 9.1e-83 310.8 180 79.4
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 9.1e-83 310.8 180 81.1
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 3.5e-82 308.9 249 78.3
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 5.9e-82 308.1 180 80.0
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 2.3e-81 306.2 178 79.8
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 2.9e-81 305.8 246 62.6
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 8.6e-81 304.3 246 74.0
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 1.9e-80 303.1 246 73.2
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 5.5e-80 301.6 246 72.8
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 7.2e-80 301.2 247 76.1
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 7.2e-80 301.2 211 69.2
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 1.6e-79 300.1 168 83.9
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 2.1e-79 299.7 168 83.3
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 3.6e-79 298.9 180 78.9
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 4.7e-79 298.5 249 68.7
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 8.0e-79 297.7 300 61.3
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 2.3e-78 296.2 179 80.4
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 4.0e-78 295.4 276 68.1
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 6.8e-78 294.7 179 77.7
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 1.2e-77 293.9 161 85.1
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 2.2e-76 289.7 180 75.6
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 8.3e-76 287.7 180 74.4
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 1.4e-75 287.0 181 73.5
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 1.6e-74 283.5 207 69.6
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 2.5e-72 276.2 306 55.6
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 6.1e-71 271.6 212 65.1
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 1.8e-70 270.0 167 74.9
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 2.0e-69 266.5 150 84.7
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 7.5e-69 264.6 194 68.6
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 9.8e-69 264.2 162 77.8
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 1.1e-67 260.8 148 81.1
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 1.1e-67 260.8 185 66.5
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.9e-67 260.0 145 83.4
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 1.2e-66 257.3 180 67.2
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 3.0e-65 252.7 146 80.1
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 1.6e-63 246.9 197 65.0
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 4.7e-63 245.4 181 64.1
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 2.4e-59 233.0 278 50.0
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 2.1e-58 229.9 256 69.5
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 7.8e-58 228.0 281 61.2
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 5.1e-57 225.3 178 65.7
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 3.6e-55 219.2 343 39.7
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 3.1e-54 216.1 266 45.9
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.2e-53 214.2 125 80.8
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 1.3e-52 210.7 154 68.8
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 1.7e-52 210.3 187 54.5
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 1.9e-51 206.8 131 74.0
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 1.6e-50 203.8 170 82.9
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 7.6e-45 184.9 115 78.3
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 2.3e-41 173.3 145 64.8
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 1.3e-39 167.5 118 66.1
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 4.8e-39 165.6 113 65.5
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 6.2e-39 165.2 98 81.6
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 2.4e-30 136.7 81 77.8
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 6.4e-28 128.6 107 61.7
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 1.3e-23 114.4 166 65.1
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 6.9e-22 108.6 112 52.7
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 1.0e-17 94.7 123 65.0
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 8.7e-09 65.1 36 80.6
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 4.3e-08 62.8 34 79.4
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 3.7e-07 59.7 35 74.3
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 8.2e-07 58.5 29 93.1


User provided reference genes

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