Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 4.0e-208 728.0 416 100.0
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 5.7e-170 601.3 421 84.3
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.3e-163 579.3 421 82.7
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.8e-162 573.9 408 83.8
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-161 572.8 405 82.7
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-155 553.5 408 80.1
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.9e-133 479.9 421 67.5
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 4.6e-127 458.8 425 65.9
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.6e-124 450.3 421 64.1
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 2.2e-97 360.1 425 51.3
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 9.3e-96 354.8 425 50.6
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 8.1e-92 341.7 423 50.4
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.6e-90 336.7 439 51.0
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.3e-86 324.3 427 48.2
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.3e-86 324.3 427 48.2
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 7.4e-85 318.5 430 47.9
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.3e-84 317.8 424 47.2
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.8e-84 316.6 424 48.8
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.7e-84 316.2 426 47.4
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.8e-84 315.8 429 47.8
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 8.2e-84 315.1 423 47.3
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.4e-83 314.3 423 47.0
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 3.1e-83 313.2 426 45.8
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.0e-81 308.1 412 48.8
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.3e-81 307.8 426 46.7
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.9e-81 306.6 423 46.1
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.9e-81 306.6 424 47.9
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 3.8e-81 306.2 423 47.3
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.5e-80 303.5 432 47.7
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 7.2e-80 302.0 424 45.0
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.6e-79 300.8 426 46.7
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.0e-78 298.1 458 45.0
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.0e-78 298.1 433 44.3
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.3e-78 297.7 423 47.0
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.9e-77 293.9 422 45.3
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 3.3e-77 293.1 432 45.4
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 5.7e-77 292.4 448 44.0
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.2e-76 290.4 428 45.1
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 2.8e-76 290.0 453 43.7
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 3.7e-76 289.7 436 46.3
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.4e-75 287.7 419 45.8
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.4e-75 287.7 418 45.9
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 4.1e-75 286.2 363 50.7
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 9.1e-75 285.0 425 42.6
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 5.9e-74 282.3 346 55.5
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 7.7e-74 282.0 423 43.5
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-73 281.2 424 42.2
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-73 281.2 424 42.2
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.7e-73 280.8 437 44.2
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.9e-73 280.0 432 45.4
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 2.9e-73 280.0 427 43.3
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 3.8e-73 279.6 427 42.6
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.4e-72 277.7 432 45.6
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 4.2e-72 276.2 425 43.3
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 4.2e-72 276.2 429 42.9
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.2e-72 276.2 415 48.2
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.6e-71 272.7 422 43.8
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.0e-70 271.6 418 43.8
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.5e-69 267.7 427 41.0
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 2.6e-69 266.9 421 40.4
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.8e-68 263.5 442 39.8
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.8e-68 262.7 430 43.3
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.1e-67 261.5 438 42.5
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.4e-67 261.2 434 44.9
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.8e-67 260.8 428 44.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 2.4e-67 260.4 431 42.0
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 5.3e-67 259.2 430 40.9
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.0e-66 257.3 421 43.2
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 3.8e-65 253.1 437 39.6
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 1.1e-64 251.5 452 39.8
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 7.2e-64 248.8 426 40.1
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 3.6e-63 246.5 416 41.6
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.6e-63 246.5 366 44.3
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 6.1e-63 245.7 347 45.8
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.8e-62 244.2 266 56.8
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.3e-62 243.8 364 43.7
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 2.6e-61 240.4 455 38.9
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 4.4e-61 239.6 451 39.0
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 7.4e-61 238.8 452 39.2
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 9.7e-61 238.4 449 39.9
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 9.7e-61 238.4 426 40.4
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 4.8e-60 236.1 454 39.9
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 6.3e-60 235.7 426 40.1
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 6.3e-60 235.7 452 40.0
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.3e-60 235.7 351 45.0
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 7.0e-59 232.3 422 38.6
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 9.1e-59 231.9 445 37.5
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 9.1e-59 231.9 447 39.8
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 2.0e-58 230.7 435 38.2
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 4.5e-58 229.6 426 37.6
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 5.9e-58 229.2 423 38.5
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 3.6e-55 219.9 420 37.1
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.8e-54 217.6 307 49.5
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 2.0e-53 214.2 372 40.3
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 5.7e-53 212.6 444 36.3
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 7.5e-53 212.2 447 37.6
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 7.5e-53 212.2 447 37.6
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.3e-52 211.5 252 50.0
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.7e-52 211.1 352 40.6
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.7e-52 209.9 447 37.6
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 3.7e-52 209.9 454 36.8
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 6.3e-52 209.1 447 36.7
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.3e-52 209.1 424 37.5
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.4e-51 208.0 447 37.4
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.4e-51 207.2 424 37.5
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 5.3e-51 206.1 448 35.9
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.3e-51 206.1 419 38.7
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 9.1e-51 205.3 451 36.4
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 2.2e-49 200.7 452 36.3
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.5e-48 198.0 314 42.7
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 7.2e-48 195.7 452 35.8
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 9.4e-48 195.3 451 35.5
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 4.7e-47 193.0 451 35.5
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 8.8e-46 188.7 421 35.4
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 2.5e-40 170.6 451 33.0
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 2.8e-39 167.2 435 33.3
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 3.0e-38 163.7 255 43.1
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 4.0e-38 163.3 270 45.2
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.7e-36 157.9 251 43.8
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 6.3e-36 156.0 238 40.8
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 5.4e-35 152.9 245 41.6
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.6e-34 151.4 237 41.4
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.3e-33 148.3 256 40.2
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.3e-33 147.5 255 39.2
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.9e-33 147.1 197 44.7
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 8.6e-33 145.6 239 41.4
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.1e-32 145.2 255 42.4
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.9e-32 144.4 247 41.3
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 3.3e-32 143.7 249 41.0
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 7.3e-32 142.5 244 42.2
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.2e-31 141.7 227 40.1
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 3.6e-31 140.2 240 37.1
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.6e-31 140.2 249 38.2
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 8.0e-31 139.0 259 39.4
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 8.0e-31 139.0 236 37.3
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 8.0e-31 139.0 447 30.2
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.0e-30 138.7 253 38.7
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.0e-30 138.7 235 40.9
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.8e-30 137.9 219 42.9
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.6e-29 134.0 253 38.3
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 3.4e-29 133.7 238 42.0
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 3.4e-29 133.7 255 39.6
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 3.4e-29 133.7 208 41.3
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.7e-29 132.9 249 35.7
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.7e-28 130.2 259 35.1
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 3.7e-28 130.2 243 39.5
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.4e-27 128.3 310 35.2
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.2e-26 125.2 421 27.8
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 3.9e-25 120.2 260 35.8
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 5.0e-25 119.8 235 36.6
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 5.6e-24 116.3 250 35.6
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 9.5e-24 115.5 260 35.4
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 7.5e-21 105.9 256 34.8
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.3e-20 105.1 256 33.6
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.9e-20 104.0 222 33.8
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 6.4e-20 102.8 84 67.9
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.6e-18 96.7 243 32.5
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.0e-18 96.3 130 46.2
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.1e-15 87.8 127 38.6
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 3.6e-15 87.0 63 57.1
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.7e-15 86.7 196 35.7
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.8e-14 84.7 190 35.3
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.2e-13 82.0 136 42.6
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.6e-13 80.9 175 35.4
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.6e-13 80.9 175 35.4
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.4e-12 76.3 176 33.0
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.9e-11 74.7 146 35.6
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 9.2e-11 72.4 155 37.4
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 1.2e-10 72.0 51 60.8
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 6.0e-10 69.7 172 33.7
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 9.5e-08 62.4 47 59.6


User provided reference genes

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