Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 1.9e-67 259.2 150 100.0
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.0e-60 235.3 148 93.2
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-59 233.0 148 93.9
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-49 199.1 187 70.6
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 3.8e-47 191.8 129 81.4
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.1e-46 190.3 187 65.2
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.4e-46 189.9 187 65.2
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.2e-46 188.7 187 66.8
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.6e-45 186.4 187 64.7
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 2.7e-45 185.7 129 79.8
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.8e-45 184.1 187 64.2
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 6.6e-44 181.0 129 78.3
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.3e-43 178.3 148 77.0
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 7.3e-43 177.6 147 78.2
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 9.9e-40 167.2 151 70.9
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 2.2e-39 166.0 151 72.8
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-38 163.7 129 73.6
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 1.2e-37 160.2 154 68.8
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.5e-35 153.3 149 59.7
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 2.6e-32 142.5 151 61.6
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 2.6e-32 142.5 153 60.8
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 9.9e-32 140.6 156 63.5
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 1.7e-31 139.8 154 61.0
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 1.7e-31 139.8 153 62.1
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 6.4e-31 137.9 158 62.7
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 6.4e-31 137.9 134 57.5
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 8.4e-31 137.5 154 61.0
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 1.4e-30 136.7 158 60.1
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.9e-30 136.3 159 59.7
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 4.2e-30 135.2 155 58.7
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 1.6e-29 133.3 160 56.2
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 6.0e-29 131.3 154 59.1
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.8e-28 129.8 153 59.5
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 1.8e-28 129.8 155 50.3
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 3.0e-28 129.0 112 80.4
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 5.1e-28 128.3 151 60.9
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 5.6e-27 124.8 155 60.6
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 9.6e-27 124.0 137 54.0
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 9.6e-27 124.0 128 58.6
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.3e-26 123.6 165 53.3
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 2.1e-26 122.9 131 55.7
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 2.1e-26 122.9 137 53.3
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.1e-25 120.6 127 56.7
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.1e-25 120.6 150 52.0
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 2.4e-25 119.4 132 56.1
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 2.4e-25 119.4 158 57.6
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 9.0e-25 117.5 121 57.0
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 2.6e-24 115.9 120 56.7
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 3.4e-24 115.5 145 59.3
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 3.4e-24 115.5 153 56.2
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 3.4e-24 115.5 157 54.1
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 4.5e-24 115.2 155 56.1
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 5.8e-24 114.8 150 54.7
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 7.6e-24 114.4 152 57.2
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 1.3e-23 113.6 120 55.8
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.3e-23 113.6 136 52.2
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 1.3e-23 113.6 151 52.3
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.7e-23 113.2 131 49.6
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.7e-23 113.2 154 53.9
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 2.2e-23 112.8 129 50.4
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 2.2e-23 112.8 129 50.4
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 2.2e-23 112.8 129 50.4
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.2e-23 112.8 135 52.6
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.8e-23 112.1 143 49.7
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.8e-23 112.1 111 58.6
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 3.8e-23 112.1 125 56.0
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 4.9e-23 111.7 157 56.1
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.1e-22 110.5 110 58.2
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.1e-22 110.5 147 53.1
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 1.4e-22 110.2 110 58.2
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.4e-22 110.2 110 58.2
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.4e-22 110.2 130 56.2
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 1.9e-22 109.8 126 54.8
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 3.2e-22 109.0 126 51.6
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 4.2e-22 108.6 129 49.6
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 4.2e-22 108.6 129 49.6
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 5.5e-22 108.2 121 50.4
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 5.5e-22 108.2 125 52.8
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 7.1e-22 107.8 124 51.6
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.2e-21 107.1 120 49.2
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.6e-21 106.7 118 53.4
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 1.6e-21 106.7 122 56.6
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 2.7e-21 105.9 126 50.8
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 2.7e-21 105.9 118 52.5
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 2.7e-21 105.9 118 52.5
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 2.7e-21 105.9 118 52.5
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 2.7e-21 105.9 117 53.8
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 2.7e-21 105.9 123 51.2
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 3.5e-21 105.5 128 53.9
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.5e-21 105.5 120 48.3
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 4.6e-21 105.1 139 56.1
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 4.6e-21 105.1 130 50.8
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.0e-20 104.0 157 53.5
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.3e-20 103.6 120 50.0
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 2.3e-20 102.8 117 51.3
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 2.3e-20 102.8 124 50.8
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 3.0e-20 102.4 120 50.0
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 3.9e-20 102.1 126 50.8
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 3.9e-20 102.1 128 49.2
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.1e-19 100.5 163 46.6
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.1e-19 100.5 124 50.8
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.1e-19 100.5 129 50.4
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 1.5e-19 100.1 115 50.4
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 4.3e-19 98.6 137 49.6
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 4.8e-18 95.1 111 51.4
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.4e-17 93.6 109 51.4
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.8e-17 93.2 123 51.2
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 2.4e-17 92.8 139 45.3
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 4.1e-17 92.0 129 47.3
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 9.0e-17 90.9 149 42.3
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 7.6e-16 87.8 88 58.0
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.0e-15 87.4 116 47.4
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 6.5e-15 84.7 108 58.3
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.4e-14 83.6 115 45.2
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 4.2e-14 82.0 129 45.0
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 7.2e-14 81.3 142 41.5
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 9.3e-14 80.9 148 39.2
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 3.6e-13 79.0 130 43.1
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 3.6e-13 79.0 121 41.3
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 6.1e-13 78.2 115 44.3
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 7.9e-13 77.8 84 54.8
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 3.9e-12 75.5 136 39.7
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.1e-11 73.9 84 53.6
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 1.3e-10 70.5 150 45.3
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.8e-10 69.3 106 42.5
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 4.8e-10 68.6 67 52.2
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 8.2e-10 67.8 79 51.9
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 1.1e-09 67.4 125 38.4
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 1.4e-09 67.0 74 51.4
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 8.5e-07 57.8 111 39.6
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 7.2e-06 54.7 64 46.9
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 9.4e-06 54.3 122 35.2


User provided reference genes

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