Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 5.1e-224 780.8 401 100.0
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.2e-212 743.0 401 94.0
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.4e-212 741.5 401 94.0
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 7.4e-175 617.5 328 95.4
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.3e-174 616.7 328 95.1
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 2.2e-155 552.7 332 86.4
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 2.0e-151 539.7 405 71.6
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 3.5e-148 528.9 329 85.1
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 1.3e-147 526.9 329 84.8
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.5e-146 523.5 405 65.2
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 3.2e-146 522.3 408 68.1
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.5e-143 513.5 409 68.0
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 3.4e-143 512.3 440 64.1
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 3.1e-141 505.8 420 66.4
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.4e-136 490.3 329 77.2
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.6e-129 466.8 409 64.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 1.4e-128 463.8 409 63.8
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.4e-128 463.8 329 74.2
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 3.1e-128 462.6 328 72.3
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.6e-127 459.5 329 73.3
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 7.5e-127 458.0 328 72.0
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.3e-126 457.2 329 72.9
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 2.2e-126 456.4 328 72.3
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 6.4e-126 454.9 325 73.5
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 6.4e-126 454.9 328 71.6
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 6.4e-126 454.9 332 71.1
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 8.3e-126 454.5 328 71.3
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.9e-125 453.4 364 65.4
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 2.4e-125 453.0 332 71.7
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 2.4e-125 453.0 328 72.0
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 3.2e-125 452.6 407 62.7
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.4e-125 451.8 332 70.8
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 7.0e-125 451.4 329 72.0
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 3.5e-124 449.1 332 70.8
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 7.8e-124 448.0 406 60.1
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 7.8e-124 448.0 329 72.0
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.7e-123 446.8 329 72.0
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.1e-122 444.1 328 71.0
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 3.3e-122 442.6 408 59.6
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.3e-122 442.2 327 71.6
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.6e-122 441.8 327 71.6
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 2.8e-121 439.5 371 61.5
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 2.8e-121 439.5 327 71.3
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 4.7e-121 438.7 325 71.1
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.1e-120 437.6 329 71.4
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.4e-120 437.2 370 61.9
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 3.1e-120 436.0 328 69.2
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.2e-119 434.1 353 62.9
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.0e-119 433.3 328 71.0
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 2.0e-119 433.3 328 70.1
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 3.4e-119 432.6 325 69.8
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 9.8e-119 431.0 324 71.3
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 2.2e-118 429.9 340 65.9
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.2e-118 429.9 330 70.0
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 6.4e-118 428.3 328 69.5
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.1e-117 427.6 331 69.5
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.4e-117 427.2 330 70.0
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.4e-117 427.2 324 71.9
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 1.4e-117 427.2 330 68.2
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.2e-117 426.0 389 60.9
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.1e-117 425.6 328 68.6
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.1e-116 423.3 328 68.9
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 6.0e-116 421.8 331 68.9
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 6.0e-116 421.8 349 66.5
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 7.8e-116 421.4 331 68.9
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 3.0e-115 419.5 328 65.5
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.9e-115 419.1 328 68.6
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 8.6e-115 417.9 330 69.1
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 3.3e-114 416.0 325 68.0
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 2.1e-113 413.3 328 66.2
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 4.7e-113 412.1 326 69.0
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.7e-113 412.1 328 64.9
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 6.2e-113 411.8 325 64.3
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 4.0e-112 409.1 329 66.6
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 2.0e-111 406.8 325 67.1
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.7e-110 403.7 328 63.7
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 1.7e-110 403.7 328 63.4
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.9e-110 402.9 330 65.2
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 2.9e-110 402.9 330 66.4
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 8.4e-110 401.4 329 65.7
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 2.4e-109 399.8 328 66.8
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 7.1e-109 398.3 329 61.1
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 4.6e-108 395.6 329 63.2
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 4.6e-108 395.6 329 63.8
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.8e-108 394.8 332 64.2
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.3e-107 394.0 346 62.4
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.7e-107 393.7 449 53.7
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 3.9e-107 392.5 328 63.4
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 5.1e-107 392.1 396 54.8
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 5.1e-107 392.1 298 69.5
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 1.6e-105 387.1 329 60.2
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 2.1e-105 386.7 325 64.9
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 3.6e-105 386.0 337 63.2
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 2.4e-104 383.3 328 63.4
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 2.6e-103 379.8 332 62.3
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 2.2e-102 376.7 301 69.1
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 2.2e-102 376.7 328 57.6
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 4.9e-102 375.6 328 62.2
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 6.4e-102 375.2 326 62.6
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.1e-101 374.4 326 61.0
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 3.2e-101 372.9 241 68.9
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 7.1e-101 371.7 328 61.3
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 4.6e-100 369.0 347 54.5
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.6e-100 369.0 328 60.7
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.5e-98 364.0 298 67.4
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 3.3e-98 362.8 328 59.8
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 4.3e-98 362.5 328 57.3
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 9.6e-98 361.3 323 56.0
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 9.6e-98 361.3 328 60.7
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.6e-97 359.4 295 67.8
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.8e-96 357.1 325 58.8
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 9.9e-95 351.3 287 62.4
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.3e-94 350.9 396 53.8
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.4e-93 347.4 246 66.3
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 3.2e-93 346.3 329 56.8
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 9.3e-93 344.7 343 55.1
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.2e-92 344.4 324 59.6
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 3.5e-92 342.8 335 57.6
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 6.0e-92 342.0 332 56.9
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.0e-91 341.3 338 57.4
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 5.1e-91 339.0 328 54.6
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 6.7e-91 338.6 326 56.1
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 8.7e-91 338.2 329 55.6
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 8.7e-91 338.2 328 55.8
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.1e-90 337.8 326 56.7
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 4.3e-90 335.9 326 55.8
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 4.3e-90 335.9 326 55.8
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 1.3e-89 334.3 325 56.6
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 2.8e-89 333.2 379 53.6
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 3.6e-89 332.8 348 56.9
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.2e-87 327.8 415 49.9
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-87 327.4 278 66.2
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 1.3e-86 324.3 411 49.9
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 2.9e-86 323.2 323 49.8
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 3.8e-86 322.8 370 53.5
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 4.9e-86 322.4 416 50.7
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 9.3e-85 318.2 387 50.1
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.2e-84 317.8 202 70.3
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.2e-84 317.8 372 52.4
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.6e-84 317.4 378 50.0
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 1.6e-84 317.4 202 67.3
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.1e-84 317.0 328 54.6
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 3.0e-83 313.2 346 54.9
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 3.9e-83 312.8 335 48.1
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.1e-82 311.2 376 49.2
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.3e-81 307.8 345 54.8
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 2.8e-81 306.6 379 48.0
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.7e-81 306.2 263 60.1
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.1e-80 304.7 318 51.3
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 3.8e-78 296.2 329 52.0
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.5e-77 293.5 328 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 4.3e-74 282.7 320 51.6
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 8.2e-73 278.5 328 50.3
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-66 257.7 191 63.9
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.4e-64 251.1 328 45.1
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 3.4e-63 246.5 367 44.1
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 3.2e-61 240.0 371 43.7
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 2.9e-54 216.9 189 49.2
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.1e-52 210.7 167 60.5
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 6.1e-52 209.1 322 42.9
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.1e-50 204.9 344 40.4
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.6e-42 177.2 93 82.8
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.7e-33 146.7 74 85.1
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 5.9e-31 139.4 74 83.8
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 7.3e-21 105.9 110 42.7
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 1.0e-14 85.5 71 70.4
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 8.6e-14 82.4 47 74.5
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.5e-13 80.9 48 70.8


User provided reference genes

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