Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0315431 Rosa chinensis HOM05D001260 ORTHO05D004134 5.2e-60 234.2 118 100.0
RcHm_v2.0_Chr1g0324411 Rosa chinensis HOM05D001260 ORTHO05D004134 5.2e-60 234.2 118 100.0
RcHm_v2.0_Chr1g0369591 Rosa chinensis HOM05D001260 ORTHO05D004134 1.7e-42 176.0 98 94.9
RcHm_v2.0_Chr1g0368661 Rosa chinensis HOM05D001260 ORTHO05D004134 1.6e-21 106.3 88 65.9
FvH4_7g23510 Fragaria vesca HOM05D001260 ORTHO05D004134 4.0e-20 101.7 89 65.2
FAN03G2667 Fragaria x ananassa HOM05D001260 ORTHO05D004134 4.0e-20 101.7 89 65.2
FAN06G4376 Fragaria x ananassa HOM05D001260 ORTHO05D004134 4.0e-20 101.7 89 65.2
FAN10G0370 Fragaria x ananassa HOM05D001260 ORTHO05D004134 4.0e-20 101.7 89 65.2
CiPaw.01G292400 Carya illinoinensis HOM05D001260 ORTHO05D004134 2.0e-19 99.4 88 61.4
FAN06G3528 Fragaria x ananassa HOM05D001260 ORTHO05D004134 2.0e-19 99.4 88 64.8
FvH4_7g23851 Fragaria vesca HOM05D001260 ORTHO05D004134 3.4e-19 98.6 89 62.9
MD01G1140700 Malus domestica HOM05D001260 ORTHO05D004134 5.8e-19 97.8 88 60.2
Duzib114G0845 Durio zibethinus HOM05D001260 ORTHO05D004134 1.3e-18 96.7 88 61.4
FAN01G0960 Fragaria x ananassa HOM05D001260 ORTHO05D004134 2.2e-18 95.9 87 63.2
MD07G1205000 Malus domestica HOM05D001260 ORTHO05D004134 2.9e-18 95.5 88 59.1
Rhsim03G0137000 Rhododendron simsii HOM05D001260 ORTHO05D004134 1.9e-17 92.8 89 58.4
QL08p061745 Quercus lobata HOM05D001260 ORTHO05D004134 2.4e-17 92.4 88 59.1
Gohir.D05G301900 Gossypium hirsutum HOM05D001260 ORTHO05D004134 5.4e-17 91.3 88 60.2
Gorai.009G320000 Gossypium raimondii HOM05D001260 ORTHO05D004134 5.4e-17 91.3 88 60.2
Sed0007578 Sechium edule HOM05D001260 ORTHO05D004134 5.4e-17 91.3 88 56.8
Cpa.g.sc19.263 Carica papaya HOM05D001260 ORTHO05D004134 7.1e-17 90.9 88 60.2
Migut.F00740 Erythranthe guttata HOM05D001260 ORTHO05D004134 7.1e-17 90.9 88 58.0
Sabra08G0044800 Salix brachista HOM05D001260 ORTHO05D004134 7.1e-17 90.9 88 56.8
Thecc.10G033200 Theobroma cacao HOM05D001260 ORTHO05D004134 7.1e-17 90.9 88 59.1
Sed0004245 Sechium edule HOM05D001260 ORTHO05D004134 9.3e-17 90.5 88 56.8
Ciclev10033559m.g Citrus clementina HOM05D001260 ORTHO05D004134 1.2e-16 90.1 88 56.8
CsaV3_6G001430 Cucumis sativus L. HOM05D001260 ORTHO05D004134 1.2e-16 90.1 88 56.8
Gohir.A10G224000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.6e-16 89.7 88 58.0
Manes.10G022400 Manihot esculenta HOM05D001260 ORTHO05D004134 1.6e-16 89.7 88 58.0
Gohir.A05G302400 Gossypium hirsutum HOM05D001260 ORTHO05D004134 2.1e-16 89.4 88 59.1
Gorai.011G270700 Gossypium raimondii HOM05D001260 ORTHO05D004134 2.1e-16 89.4 88 58.0
Potri.008G060700 Populus trichocarpa HOM05D001260 ORTHO05D004134 2.1e-16 89.4 88 55.7
Thecc.10G033600 Theobroma cacao HOM05D001260 ORTHO05D004134 2.1e-16 89.4 88 58.0
CSS0048341 Camellia sinensis var. sinensis HOM05D001260 ORTHO05D004134 2.7e-16 89.0 88 56.8
Gohir.D10G237000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 2.7e-16 89.0 88 59.1
COL.COLO4_25532 Corchorus olitorius HOM05D001260 ORTHO05D004134 4.6e-16 88.2 81 60.5
GSVIVG01016463001 Vitis vinifera HOM05D001260 ORTHO05D004134 4.6e-16 88.2 89 56.2
Dinv16267 Davidia involucrata HOM05D001260 ORTHO05D004134 6.0e-16 87.8 88 56.8
Gorai.011G270300 Gossypium raimondii HOM05D001260 ORTHO05D004134 6.0e-16 87.8 88 58.0
GSVIVG01008874001 Vitis vinifera HOM05D001260 ORTHO05D004134 6.0e-16 87.8 87 56.3
Manes.07G121400 Manihot esculenta HOM05D001260 ORTHO05D004134 7.9e-16 87.4 88 56.8
Gohir.D10G236624 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.3e-15 86.7 88 58.0
Gorai.011G270500 Gossypium raimondii HOM05D001260 ORTHO05D004134 1.3e-15 86.7 88 58.0
Phvul.008G230000 Phaseolus vulgaris HOM05D001260 ORTHO05D004134 1.3e-15 86.7 87 54.0
MELO3C008247.2 Cucumis melo HOM05D001260 ORTHO05D004134 1.8e-15 86.3 88 54.5
Atru.chr12.295 Acer truncatum HOM05D001260 ORTHO05D004134 3.0e-15 85.5 88 54.5
Atru.chr12.334 Acer truncatum HOM05D001260 ORTHO05D004134 3.0e-15 85.5 88 54.5
CANSAT56G4350 Cannabis sativa HOM05D001260 ORTHO05D004134 3.0e-15 85.5 88 53.4
TWI63G0278 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 3.0e-15 85.5 86 54.7
Glyma.02G251500 Glycine max HOM05D001260 ORTHO05D004134 3.9e-15 85.1 87 54.0
Lalb_Chr17g0346411 Lupinus albus HOM05D001260 ORTHO05D004134 3.9e-15 85.1 87 57.5
VMungo0647G2094 Vigna mungo HOM05D001260 ORTHO05D004134 3.9e-15 85.1 87 52.9
ClCG11G006570 Citrullus lanatus HOM05D001260 ORTHO05D004134 5.1e-15 84.7 86 54.7
DCAR_011747 Daucus carota HOM05D001260 ORTHO05D004134 5.1e-15 84.7 89 53.9
Glyma.14G065300 Glycine max HOM05D001260 ORTHO05D004134 5.1e-15 84.7 87 54.0
Medtr5g081240 Medicago truncatula HOM05D001260 ORTHO05D004134 5.1e-15 84.7 84 53.6
Hma1.2p1_0039F.1_g024740 Hydrangea macrophylla HOM05D001260 ORTHO05D004134 1.5e-14 83.2 89 56.2
TWI38G0285 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 1.5e-14 83.2 87 54.0
TPR.G25828 Trifolium pratense HOM05D001260 ORTHO05D004134 1.9e-14 82.8 87 49.4
A10p30380 Brassica napus HOM05D001260 ORTHO05D004134 2.5e-14 82.4 87 55.2
arahy.Tifrunner.gnm1.ann1.1DVI41 Arachis hypogaea HOM05D001260 ORTHO05D004134 3.3e-14 82.0 93 53.8
Lalb_Chr04g0250961 Lupinus albus HOM05D001260 ORTHO05D004134 3.3e-14 82.0 62 69.4
Ca_05847_v3 Cicer arietinum L. HOM05D001260 ORTHO05D004134 4.3e-14 81.6 87 49.4
Eucgr.J02123 Eucalyptus grandis HOM05D001260 ORTHO05D004134 4.3e-14 81.6 88 53.4
Lalb_Chr10g0104791 Lupinus albus HOM05D001260 ORTHO05D004134 4.3e-14 81.6 87 54.0
RcHm_v2.0_Chr4g0410241 Rosa chinensis HOM05D001260 ORTHO05D004134 5.6e-14 81.3 60 71.7
AT5G05970 Arabidopsis thaliana HOM05D001260 ORTHO05D004134 7.4e-14 80.9 87 52.9
arahy.Tifrunner.gnm1.ann1.TM7LMJ Arachis hypogaea HOM05D001260 ORTHO05D004134 9.6e-14 80.5 93 52.7
C09p70820 Brassica napus HOM05D001260 ORTHO05D004134 9.6e-14 80.5 88 54.5
Carub.0006s0486 Capsella rubella HOM05D001260 ORTHO05D004134 9.6e-14 80.5 87 52.9
Thhalv10012734m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 1.6e-13 79.7 91 52.7
MSTRG.259 Avicennia marina HOM05D001260 ORTHO05D004134 2.1e-13 79.3 88 53.4
BraA10t45077Z Brassica rapa HOM05D001260 ORTHO05D004134 2.1e-13 79.3 87 54.0
Cc02_g07290 Coffea canephora HOM05D001260 ORTHO05D004134 2.1e-13 79.3 89 52.8
Oeu001521.1 Olea europaea HOM05D001260 ORTHO05D004134 2.1e-13 79.3 89 52.8
TPR.G1704 Trifolium pratense HOM05D001260 ORTHO05D004134 2.1e-13 79.3 87 47.1
Aa31LG11G7010 Aethionema arabicum HOM05D001260 ORTHO05D004134 2.8e-13 79.0 90 55.6
BolC9t59841H Brassica oleracea HOM05D001260 ORTHO05D004134 2.8e-13 79.0 85 52.9
Duzib128G0118 Durio zibethinus HOM05D001260 ORTHO05D004134 3.7e-13 78.6 88 54.5
Nn2g13504 Nelumbo nucifera HOM05D001260 ORTHO05D004134 4.8e-13 78.2 90 52.2
Psat7g258880 Pisum sativum HOM05D001260 ORTHO05D004134 4.8e-13 78.2 87 46.0
Oeu039009.1 Olea europaea HOM05D001260 ORTHO05D004134 6.2e-13 77.8 90 53.3
PGR044G1255 Punica granatum HOM05D001260 ORTHO05D004134 8.1e-13 77.4 80 55.0
THA.LOC104826868 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 8.1e-13 77.4 62 62.9
AL6G15910 Arabidopsis lyrata HOM05D001260 ORTHO05D004134 1.8e-12 76.3 85 51.8
BcaNung06227 Brassica carinata HOM05D001260 ORTHO05D004134 1.8e-12 76.3 62 66.1
BcaB06g25631 Brassica carinata HOM05D001260 ORTHO05D004134 2.4e-12 75.9 88 50.0
BcaNung07355 Brassica carinata HOM05D001260 ORTHO05D004134 2.4e-12 75.9 88 50.0
A05p38010 Brassica napus HOM05D001260 ORTHO05D004134 2.4e-12 75.9 88 51.1
C05p56770 Brassica napus HOM05D001260 ORTHO05D004134 2.4e-12 75.9 88 50.0
BolC5t34341H Brassica oleracea HOM05D001260 ORTHO05D004134 2.4e-12 75.9 88 50.0
BraA05t22592Z Brassica rapa HOM05D001260 ORTHO05D004134 2.4e-12 75.9 88 51.1
LjContig00141g0022758 Lotus japonicus HOM05D001260 ORTHO05D004134 2.4e-12 75.9 88 46.6
Sp6g36920 Schrenkiella parvula HOM05D001260 ORTHO05D004134 4.0e-12 75.1 91 50.5
TAR369G0466 Trochodendron aralioides HOM05D001260 ORTHO05D004134 4.0e-12 75.1 90 50.0
THA.LOC104816577 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 6.9e-12 74.3 88 46.6
Aqoxy1G00447 Aquilegia oxysepala HOM05D001260 ORTHO05D004134 1.2e-11 73.6 90 46.7
Sp3g09610 Schrenkiella parvula HOM05D001260 ORTHO05D004134 2.0e-11 72.8 90 47.8
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 2.6e-11 72.4 92 44.6
Hund12217 Selenicereus undatus HOM05D001260 ORTHO05D004134 2.6e-11 72.4 87 48.3
ECA233G1462 Erigeron canadensis HOM05D001260 ORTHO05D004134 4.5e-11 71.6 89 47.2
Ciclev10030832m.g Citrus clementina HOM05D001260 ORTHO05D004134 5.8e-11 71.2 83 51.8
Thhalv10020101m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 1.3e-10 70.1 62 56.5
Hund22801 Selenicereus undatus HOM05D001260 ORTHO05D004134 1.3e-10 70.1 88 46.6
SalBow6G0807 Salvia bowleyana HOM05D001260 ORTHO05D004134 1.7e-10 69.7 86 47.7
CAN.G986.45 Capsicum annuum HOM05D001260 ORTHO05D004134 3.8e-10 68.6 89 47.2
CAN.G986.46 Capsicum annuum HOM05D001260 ORTHO05D004134 3.8e-10 68.6 89 47.2
Lsat_1_v5_gn_8_14640 Lactuca sativa HOM05D001260 ORTHO05D004134 3.8e-10 68.6 62 56.5
ATR0559G059 Amborella trichopoda HOM05D001260 ORTHO05D004134 4.9e-10 68.2 61 54.1
Sabra10G0152200 Salix brachista HOM05D001260 ORTHO05D004134 6.4e-10 67.8 79 53.2
EL10Ac3g06309 Beta vulgaris HOM05D001260 ORTHO05D004134 1.1e-09 67.0 88 44.3
CARHR207240 Cardamine hirsuta HOM05D001260 ORTHO05D004134 1.1e-09 67.0 62 58.1
AUR62030032 Chenopodium quinoa HOM05D001260 ORTHO05D004134 1.4e-09 66.6 89 40.4
AUR62002609 Chenopodium quinoa HOM05D001260 ORTHO05D004134 1.2e-08 63.5 65 52.3
HPP92_020548 Vanilla planifolia HOM05D001260 ORTHO05D004134 1.6e-08 63.2 61 50.8
Oeu031370.1 Olea europaea HOM05D001260 ORTHO05D004134 2.7e-08 62.4 87 46.0
Os09g0267500 Oryza sativa ssp. japonica HOM05D001260 ORTHO05D004134 7.9e-08 60.8 61 54.1
SEGI_35518 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 3.0e-07 58.9 58 48.3
TAR636G2673 Trochodendron aralioides HOM05D001260 ORTHO05D004134 5.1e-07 58.2 64 57.8
Pp3c26_11450 Physcomitrium patens HOM05D001260 ORTHO05D004134 8.7e-07 57.4 90 35.6
PSO384G2594 Papaver somniferum HOM05D001260 ORTHO05D004134 1.1e-06 57.0 90 41.1
PSO339G0232 Papaver somniferum HOM05D001260 ORTHO05D004134 1.5e-06 56.6 90 41.1
SMO271G0180 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 1.5e-06 56.6 61 44.3
Pp3c13_5000 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.9e-06 56.2 82 36.6
Pp3c4_30600 Physcomitrium patens HOM05D001260 ORTHO05D004134 4.3e-06 55.1 79 36.7
Gorai.011G270200 Gossypium raimondii HOM05D001260 ORTHO05D004134 5.6e-06 54.7 43 65.1


User provided reference genes

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