Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 7.1e-57 223.8 120 100.0
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 2.1e-56 222.2 120 99.2
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 1.8e-55 219.2 118 98.3
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 1.8e-55 219.2 120 98.3
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 5.7e-54 214.2 118 94.9
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.2e-53 212.2 120 95.0
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.8e-53 211.8 117 95.7
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 4.8e-53 211.1 120 95.8
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 8.2e-45 183.7 117 79.5
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 1.4e-44 183.0 112 84.8
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 1.5e-43 179.5 112 82.1
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 4.5e-43 177.9 117 78.6
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 1.3e-42 176.4 112 81.2
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 3.8e-42 174.9 114 78.1
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 6.5e-42 174.1 114 78.1
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 8.5e-42 173.7 117 74.4
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 7.2e-41 170.6 112 76.8
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 9.4e-41 170.2 114 74.6
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 1.2e-40 169.9 116 72.4
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 1.2e-40 169.9 114 76.3
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 1.2e-40 169.9 114 75.4
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 2.1e-40 169.1 110 78.2
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 2.1e-40 169.1 112 76.8
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 2.7e-40 168.7 114 74.6
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 3.6e-40 168.3 112 75.9
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 6.1e-40 167.5 114 75.4
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.0e-39 166.8 112 74.1
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 1.0e-39 166.8 114 76.3
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 3.0e-39 165.2 112 77.7
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 5.1e-39 164.5 120 70.8
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 6.7e-39 164.1 117 70.9
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 6.7e-39 164.1 116 72.4
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 3.3e-38 161.8 120 70.0
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 3.3e-38 161.8 117 69.2
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 3.3e-38 161.8 117 70.1
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 5.7e-38 161.0 114 71.9
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 7.4e-38 160.6 114 72.8
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 1.3e-37 159.8 110 72.7
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 1.3e-37 159.8 112 70.5
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 1.7e-37 159.5 117 69.2
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.7e-37 159.5 111 74.8
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 1.7e-37 159.5 120 68.3
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 2.8e-37 158.7 111 74.8
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 4.8e-37 157.9 101 78.2
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 4.8e-37 157.9 117 70.9
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 6.3e-37 157.5 112 71.4
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 8.2e-37 157.1 112 71.4
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 8.2e-37 157.1 112 69.6
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 1.4e-36 156.4 111 71.2
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 2.4e-36 155.6 111 71.2
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 7.0e-36 154.1 119 66.4
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.2e-35 153.3 119 69.7
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 1.2e-35 153.3 119 69.7
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 1.2e-35 153.3 116 69.0
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 1.2e-35 153.3 119 65.5
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 2.6e-35 152.1 119 64.7
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 7.7e-35 150.6 111 68.5
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 1.7e-34 149.4 116 68.1
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 2.2e-34 149.1 115 67.0
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 2.9e-34 148.7 109 68.8
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 6.5e-34 147.5 114 67.5
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 6.5e-34 147.5 114 67.5
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 6.5e-34 147.5 114 67.5
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 8.5e-34 147.1 115 63.5
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 1.4e-33 146.4 117 59.8
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 1.9e-33 146.0 116 65.5
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 3.2e-33 145.2 114 66.7
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 4.2e-33 144.8 114 65.8
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 4.2e-33 144.8 120 61.7
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 1.2e-32 143.3 114 65.8
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 1.6e-32 142.9 114 64.9
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 2.7e-32 142.1 112 64.3
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 2.7e-32 142.1 114 65.8
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 3.6e-32 141.7 114 65.8
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 3.6e-32 141.7 114 64.0
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 3.6e-32 141.7 114 64.0
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 1.0e-31 140.2 120 60.0
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 1.4e-31 139.8 111 64.0
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 3.0e-31 138.7 114 64.0
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 3.0e-31 138.7 114 64.0
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 3.0e-31 138.7 95 74.7
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 3.9e-31 138.3 108 65.7
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 2.0e-30 136.0 115 65.2
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 2.6e-30 135.6 114 63.2
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 2.6e-30 135.6 111 61.3
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 4.4e-30 134.8 111 60.4
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 4.4e-30 134.8 72 95.8
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 9.7e-30 133.7 115 63.5
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 1.3e-29 133.3 114 64.9
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 2.2e-29 132.5 114 61.4
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 2.2e-29 132.5 115 61.7
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.8e-29 131.3 93 71.0
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 6.3e-29 131.0 110 59.1
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 3.5e-27 125.2 114 57.0
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 1.8e-23 112.8 73 78.1
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.0e-23 111.7 68 82.4
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 9.7e-22 107.1 72 75.0
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 3.7e-21 105.1 109 52.3
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 3.7e-21 105.1 124 44.4
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 1.1e-20 103.6 71 71.8
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 3.5e-19 98.6 86 61.6
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 1.2e-16 90.1 72 62.5
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 2.1e-16 89.4 86 62.8
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 4.0e-15 85.1 105 42.9
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 6.8e-15 84.3 115 49.6
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 1.5e-14 83.2 108 40.7
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 5.9e-11 71.2 50 72.0
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 2.9e-10 68.9 95 44.2
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 7.2e-09 64.3 110 40.0
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 2.0e-06 56.2 37 75.7


User provided reference genes

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