Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0315241 Rosa chinensis HOM05D004829 ORTHO05D006212 8.8e-66 253.4 125 100.0
RcHm_v2.0_Chr1g0315031 Rosa chinensis HOM05D004829 ORTHO05D006212 3.7e-64 248.1 125 97.6
RcHm_v2.0_Chr1g0315311 Rosa chinensis HOM05D004829 ORTHO05D006212 6.9e-63 243.8 125 96.0
RcHm_v2.0_Chr1g0315541 Rosa chinensis HOM05D004829 ORTHO05D006212 9.1e-63 243.4 125 95.2
RcHm_v2.0_Chr1g0315381 Rosa chinensis HOM05D004829 ORTHO05D006212 1.0e-61 240.0 125 95.2
FAN25G0809 Fragaria x ananassa HOM05D004829 ORTHO05D006212 1.3e-61 239.6 125 94.4
RcHm_v2.0_Chr5g0020891 Rosa chinensis HOM05D004829 ORTHO05D006212 2.5e-60 235.3 125 94.4
FAN21G1515 Fragaria x ananassa HOM05D004829 ORTHO05D006212 3.2e-60 235.0 125 92.8
FvH4_3g12850 Fragaria vesca HOM05D004829 ORTHO05D006212 9.4e-60 233.4 125 92.8
FAN11G0705 Fragaria x ananassa HOM05D004829 ORTHO05D006212 9.4e-60 233.4 125 92.8
RcHm_v2.0_Chr5g0020791 Rosa chinensis HOM05D004829 ORTHO05D006212 3.6e-59 231.5 125 91.2
Prupe.4G116700 Prunus persica HOM05D004829 ORTHO05D006212 3.3e-57 224.9 126 86.5
MD10G1228200 Malus domestica HOM05D004829 ORTHO05D006212 5.7e-57 224.2 126 86.5
RcHm_v2.0_Chr5g0021521 Rosa chinensis HOM05D004829 ORTHO05D006212 2.6e-54 215.3 112 94.6
RcHm_v2.0_Chr1g0315091 Rosa chinensis HOM05D004829 ORTHO05D006212 1.3e-53 213.0 107 96.3
RcHm_v2.0_Chr1g0315201 Rosa chinensis HOM05D004829 ORTHO05D006212 1.7e-53 212.6 107 96.3
RcHm_v2.0_Chr1g0315611 Rosa chinensis HOM05D004829 ORTHO05D006212 2.2e-53 212.2 109 94.5
Thecc.02G004600 Theobroma cacao HOM05D004829 ORTHO05D006212 2.2e-53 212.2 125 80.0
Cfa000658 Carpinus fangiana HOM05D004829 ORTHO05D006212 5.0e-53 211.1 125 77.6
CANSAT35G0413 Cannabis sativa HOM05D004829 ORTHO05D006212 8.5e-53 210.3 125 77.6
Potri.001G160100 Populus trichocarpa HOM05D004829 ORTHO05D006212 8.5e-53 210.3 125 79.2
COL.COLO4_18027 Corchorus olitorius HOM05D004829 ORTHO05D006212 1.1e-52 209.9 125 79.2
RcHm_v2.0_Chr1g0315471 Rosa chinensis HOM05D004829 ORTHO05D006212 1.9e-52 209.1 114 91.2
Haze_06166 Corylus avellana HOM05D004829 ORTHO05D006212 2.5e-52 208.8 125 76.8
QL11p012432 Quercus lobata HOM05D004829 ORTHO05D006212 3.2e-52 208.4 124 76.6
Manes.16G050400 Manihot esculenta HOM05D004829 ORTHO05D006212 9.4e-52 206.8 125 79.2
TAR624G1024 Trochodendron aralioides HOM05D004829 ORTHO05D006212 1.2e-51 206.5 125 76.8
GSVIVG01012140001 Vitis vinifera HOM05D004829 ORTHO05D006212 2.1e-51 205.7 125 77.6
Duzib132G0434 Durio zibethinus HOM05D004829 ORTHO05D006212 4.7e-51 204.5 125 78.4
Rhsim02G0252000 Rhododendron simsii HOM05D004829 ORTHO05D006212 4.7e-51 204.5 125 77.6
Gohir.A12G049400 Gossypium hirsutum HOM05D004829 ORTHO05D006212 6.1e-51 204.1 125 75.2
Gorai.008G050700 Gossypium raimondii HOM05D004829 ORTHO05D006212 6.1e-51 204.1 125 75.2
Ciclev10015120m.g Citrus clementina HOM05D004829 ORTHO05D006212 2.3e-50 202.2 124 74.2
Gohir.D12G047800 Gossypium hirsutum HOM05D004829 ORTHO05D006212 2.3e-50 202.2 125 74.4
PSO541G1671 Papaver somniferum HOM05D004829 ORTHO05D006212 5.2e-50 201.1 125 76.0
RcHm_v2.0_Chr1g0315061 Rosa chinensis HOM05D004829 ORTHO05D006212 6.7e-50 200.7 126 84.1
DCAR_004342 Daucus carota HOM05D004829 ORTHO05D006212 1.2e-49 199.9 125 74.4
arahy.Tifrunner.gnm1.ann1.503GVQ Arachis hypogaea HOM05D004829 ORTHO05D006212 1.5e-49 199.5 121 76.0
arahy.Tifrunner.gnm1.ann1.84NU8G Arachis hypogaea HOM05D004829 ORTHO05D006212 1.5e-49 199.5 121 76.0
Medtr2g035405 Medicago truncatula HOM05D004829 ORTHO05D006212 3.3e-49 198.4 121 76.0
PSO675G5466 Papaver somniferum HOM05D004829 ORTHO05D006212 4.4e-49 198.0 125 75.2
CSS0024116 Camellia sinensis var. sinensis HOM05D004829 ORTHO05D006212 5.7e-49 197.6 125 74.4
Lj1C1148G3 Lonicera japonica HOM05D004829 ORTHO05D006212 5.7e-49 197.6 125 73.6
Lj6g0020245 Lotus japonicus HOM05D004829 ORTHO05D006212 5.7e-49 197.6 121 76.0
Dinv02919 Davidia involucrata HOM05D004829 ORTHO05D006212 7.5e-49 197.2 126 74.6
Dinv06747 Davidia involucrata HOM05D004829 ORTHO05D006212 7.5e-49 197.2 126 74.6
Atru.chr10.381 Acer truncatum HOM05D004829 ORTHO05D006212 1.7e-48 196.1 124 74.2
PGR004G1679 Punica granatum HOM05D004829 ORTHO05D006212 1.7e-48 196.1 125 71.2
Glyma.15G156900 Glycine max HOM05D004829 ORTHO05D006212 2.8e-48 195.3 121 73.6
Sabra01G0132000 Salix brachista HOM05D004829 ORTHO05D006212 3.7e-48 194.9 134 71.6
Actinidia33705 Actinidia chinensis HOM05D004829 ORTHO05D006212 4.8e-48 194.5 125 72.8
Aqoxy1G01392 Aquilegia oxysepala HOM05D004829 ORTHO05D006212 4.8e-48 194.5 125 71.2
CAN.G883.4 Capsicum annuum HOM05D004829 ORTHO05D006212 6.3e-48 194.1 125 71.2
Ca_01990_v3 Cicer arietinum L. HOM05D004829 ORTHO05D006212 6.3e-48 194.1 121 74.4
Cc09_g05280 Coffea canephora HOM05D004829 ORTHO05D006212 8.2e-48 193.7 124 73.4
HanXRQChr12g0378241 Helianthus annuus HOM05D004829 ORTHO05D006212 8.2e-48 193.7 125 73.6
Hma1.2p1_0088F.1_g045100 Hydrangea macrophylla HOM05D004829 ORTHO05D006212 8.2e-48 193.7 125 72.8
Lalb_Chr15g0083721 Lupinus albus HOM05D004829 ORTHO05D006212 8.2e-48 193.7 121 73.6
VMungo1309G0038 Vigna mungo HOM05D004829 ORTHO05D006212 8.2e-48 193.7 121 72.7
Migut.M02005 Erythranthe guttata HOM05D004829 ORTHO05D006212 1.1e-47 193.4 125 71.2
Sc05g0004770 Simmondsia chinensis HOM05D004829 ORTHO05D006212 1.1e-47 193.4 125 72.8
Glyma.09G050800 Glycine max HOM05D004829 ORTHO05D006212 1.4e-47 193.0 121 72.7
PGSC0003DMG400009430 Solanum tuberosum HOM05D004829 ORTHO05D006212 1.4e-47 193.0 124 71.8
THA.LOC104811816 Tarenaya hassleriana HOM05D004829 ORTHO05D006212 1.4e-47 193.0 124 74.2
ECA246G2495 Erigeron canadensis HOM05D004829 ORTHO05D006212 3.1e-47 191.8 125 72.8
Solyc02g068380.3 Solanum lycopersicum HOM05D004829 ORTHO05D006212 3.1e-47 191.8 125 70.4
MELO3C002403.2 Cucumis melo HOM05D004829 ORTHO05D006212 4.1e-47 191.4 125 71.2
Peaxi162Scf00981g00019 Petunia axillaris HOM05D004829 ORTHO05D006212 4.1e-47 191.4 124 71.0
Sed0007455 Sechium edule HOM05D004829 ORTHO05D006212 4.1e-47 191.4 125 70.4
TPR.G135 Trifolium pratense HOM05D004829 ORTHO05D006212 7.0e-47 190.7 121 72.7
ClCG03G004200 Citrullus lanatus HOM05D004829 ORTHO05D006212 9.1e-47 190.3 125 70.4
Lsat_1_v5_gn_5_44281 Lactuca sativa HOM05D004829 ORTHO05D006212 9.1e-47 190.3 125 72.8
Lalb_Chr18g0052051 Lupinus albus HOM05D004829 ORTHO05D006212 9.1e-47 190.3 121 73.6
Nitab4.5_0000443g0210 Nicotiana tabacum HOM05D004829 ORTHO05D006212 1.2e-46 189.9 124 69.4
CsaV3_1G010130 Cucumis sativus L. HOM05D004829 ORTHO05D006212 2.0e-46 189.1 125 69.6
Sopen02g017510 Solanum pennellii HOM05D004829 ORTHO05D006212 2.0e-46 189.1 124 70.2
TWI38G0011 Tripterygium wilfordii HOM05D004829 ORTHO05D006212 2.0e-46 189.1 125 68.8
Nitab4.5_0000973g0030 Nicotiana tabacum HOM05D004829 ORTHO05D006212 2.7e-46 188.7 124 68.5
Hma1.2p1_0088F.1_g045110 Hydrangea macrophylla HOM05D004829 ORTHO05D006212 3.5e-46 188.3 121 72.7
SGA_v2.0_scaffold175G39334 Striga asiatica HOM05D004829 ORTHO05D006212 3.5e-46 188.3 125 68.0
unitig_92.g28192 Utricularia gibba HOM05D004829 ORTHO05D006212 3.5e-46 188.3 124 71.8
Carub.0007s2106 Capsella rubella HOM05D004829 ORTHO05D006212 1.0e-45 186.8 125 71.2
EL10Ac7g17240 Beta vulgaris HOM05D004829 ORTHO05D006212 1.7e-45 186.0 124 71.0
CARHR226880 Cardamine hirsuta HOM05D004829 ORTHO05D006212 1.7e-45 186.0 125 69.6
AL7G33780 Arabidopsis lyrata HOM05D004829 ORTHO05D006212 3.8e-45 184.9 125 68.8
RcHm_v2.0_Chr1g0315441 Rosa chinensis HOM05D004829 ORTHO05D006212 3.8e-45 184.9 96 94.8
Sp7g18530 Schrenkiella parvula HOM05D004829 ORTHO05D006212 3.8e-45 184.9 125 69.6
AT4G20070 Arabidopsis thaliana HOM05D004829 ORTHO05D006212 5.0e-45 184.5 125 69.6
MSTRG.21238 Avicennia marina HOM05D004829 ORTHO05D006212 6.5e-45 184.1 125 68.0
TWI63G0224 Tripterygium wilfordii HOM05D004829 ORTHO05D006212 6.5e-45 184.1 125 68.0
A03p52300 Brassica napus HOM05D004829 ORTHO05D006212 1.9e-44 182.6 125 70.4
C07p50740 Brassica napus HOM05D004829 ORTHO05D006212 1.9e-44 182.6 125 70.4
BraA03t14305Z Brassica rapa HOM05D004829 ORTHO05D006212 1.9e-44 182.6 125 70.4
AUR62040483 Chenopodium quinoa HOM05D004829 ORTHO05D006212 1.9e-44 182.6 124 68.5
QL11p012412 Quercus lobata HOM05D004829 ORTHO05D006212 1.9e-44 182.6 124 71.8
AUR62042800 Chenopodium quinoa HOM05D004829 ORTHO05D006212 2.5e-44 182.2 124 69.4
BcaNung03491 Brassica carinata HOM05D004829 ORTHO05D006212 4.2e-44 181.4 125 68.8
Thhalv10024702m.g Eutrema salsugineum HOM05D004829 ORTHO05D006212 5.5e-44 181.0 125 68.0
BcaC06g30644 Brassica carinata HOM05D004829 ORTHO05D006212 7.2e-44 180.6 125 68.0
BolC7t45575H Brassica oleracea HOM05D004829 ORTHO05D006212 9.4e-44 180.3 125 69.6
Aa31LG6G2480 Aethionema arabicum HOM05D004829 ORTHO05D006212 1.6e-43 179.5 125 65.6
Eucgr.D00017 Eucalyptus grandis HOM05D004829 ORTHO05D006212 3.6e-43 178.3 154 60.4
Thhalv10025370m.g Eutrema salsugineum HOM05D004829 ORTHO05D006212 4.7e-43 177.9 124 66.9
Hund18001 Selenicereus undatus HOM05D004829 ORTHO05D006212 2.3e-42 175.6 113 71.7
ATR0752G197 Amborella trichopoda HOM05D004829 ORTHO05D006212 4.8e-40 167.9 122 59.0
MBI18_g00538_MAGBIO Magnolia biondii HOM05D004829 ORTHO05D006212 1.1e-39 166.8 150 56.0
RcHm_v2.0_Chr1g0315581 Rosa chinensis HOM05D004829 ORTHO05D006212 7.7e-38 160.6 85 95.3
SEGI_28835 Sequoiadendron giganteum HOM05D004829 ORTHO05D006212 4.2e-36 154.8 123 56.9
HPP92_026370 Vanilla planifolia HOM05D004829 ORTHO05D006212 1.4e-34 149.8 119 58.0
RcHm_v2.0_Chr1g0315141 Rosa chinensis HOM05D004829 ORTHO05D006212 4.0e-34 148.3 85 90.6
HPP92_016420 Vanilla planifolia HOM05D004829 ORTHO05D006212 6.8e-34 147.5 119 56.3
Oeu046922.1 Olea europaea HOM05D004829 ORTHO05D006212 2.0e-33 146.0 95 70.5
Lalb_Chr02g0154131 Lupinus albus HOM05D004829 ORTHO05D006212 1.4e-31 139.8 92 69.6
Os06g0665500 Oryza sativa ssp. japonica HOM05D004829 ORTHO05D006212 4.1e-31 138.3 122 54.9
Zm00001eb389820 Zea mays HOM05D004829 ORTHO05D006212 9.2e-31 137.1 121 56.2
Mapoly0026s0071 Marchantia polymorpha HOM05D004829 ORTHO05D006212 8.6e-29 130.6 128 49.2
SMO117G0201 Selaginella moellendorffii HOM05D004829 ORTHO05D006212 1.9e-28 129.4 129 51.2
RcHm_v2.0_Chr5g0021441 Rosa chinensis HOM05D004829 ORTHO05D006212 8.0e-27 124.0 66 89.4
Pp3c13_1740 Physcomitrium patens HOM05D004829 ORTHO05D006212 1.8e-26 122.9 128 47.7
Pp3c3_1160 Physcomitrium patens HOM05D004829 ORTHO05D006212 3.0e-26 122.1 128 45.3
RcHm_v2.0_Chr5g0029451 Rosa chinensis HOM05D004829 ORTHO05D006212 9.8e-25 117.1 69 82.6
AagrBONN_evm.TU.Sc2ySwM_344.4392 Anthoceros agrestis HOM05D004829 ORTHO05D006212 4.9e-24 114.8 129 43.4
CDE03G0346 Ceratophyllum demersum HOM05D004829 ORTHO05D006212 6.8e-18 94.4 75 57.3
Cre13.g580700 Chlamydomonas reinhardtii HOM05D004829 ORTHO05D006212 2.0e-17 92.8 136 41.9
Ah.15g091890 Amaranthus hybridus HOM05D004829 ORTHO05D006212 1.1e-15 87.0 125 40.0
Aqoxy1G01394 Aquilegia oxysepala HOM05D004829 ORTHO05D006212 1.9e-15 86.3 69 60.9
MCO01G784 Micromonas commoda HOM05D004829 ORTHO05D006212 6.0e-14 81.3 142 33.1
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 2.1e-11 72.8 116 33.6
RcHm_v2.0_Chr1g0315151 Rosa chinensis HOM05D004829 ORTHO05D006212 5.2e-10 68.2 36 80.6


User provided reference genes

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