Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 2.3e-58 228.8 123 100.0
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 6.2e-56 220.7 118 99.2
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 1.8e-55 219.2 118 98.3
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 5.2e-55 217.6 118 98.3
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.2e-53 212.2 119 92.4
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 8.4e-53 210.3 117 94.9
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 1.9e-52 209.1 118 95.8
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 5.4e-52 207.6 118 93.2
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 4.9e-45 184.5 112 85.7
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 2.4e-44 182.2 117 78.6
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 5.4e-44 181.0 112 83.0
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 1.6e-43 179.5 117 79.5
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 4.6e-43 177.9 112 82.1
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 1.0e-42 176.8 114 78.9
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.8e-42 176.0 114 78.9
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 3.0e-42 175.3 117 75.2
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 2.5e-41 172.2 114 75.4
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 4.3e-41 171.4 116 73.3
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 7.4e-41 170.6 112 77.7
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 9.6e-41 170.2 114 76.3
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 9.6e-41 170.2 114 75.4
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 2.1e-40 169.1 114 74.6
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 2.1e-40 169.1 112 76.8
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 2.8e-40 168.7 114 77.2
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.7e-40 168.3 112 75.0
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 6.2e-40 167.5 110 77.3
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 1.1e-39 166.8 112 75.0
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 1.4e-39 166.4 114 74.6
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.4e-39 165.6 117 71.8
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 2.4e-39 165.6 116 73.3
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 9.0e-39 163.7 112 76.8
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 1.2e-38 163.3 117 70.1
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.2e-38 163.3 117 70.9
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 1.5e-38 162.9 114 72.8
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 2.0e-38 162.5 114 73.7
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 2.0e-38 162.5 112 74.1
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 2.0e-38 162.5 112 74.1
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 5.8e-38 161.0 117 70.1
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 5.8e-38 161.0 111 74.8
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 9.9e-38 160.2 111 74.8
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 1.7e-37 159.5 118 68.6
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 2.2e-37 159.1 110 72.7
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 2.2e-37 159.1 112 72.3
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 2.9e-37 158.7 112 72.3
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 3.8e-37 158.3 112 69.6
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 3.8e-37 158.3 111 72.1
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 3.8e-37 158.3 112 69.6
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 4.9e-37 157.9 101 78.2
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 6.4e-37 157.5 111 72.1
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 1.4e-36 156.4 117 70.1
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 4.2e-36 154.8 119 70.6
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 4.2e-36 154.8 119 70.6
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 4.2e-36 154.8 111 71.2
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 5.5e-36 154.5 116 69.0
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 7.1e-36 154.1 111 70.3
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 1.6e-35 152.9 111 69.4
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 2.1e-35 152.5 111 69.4
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 6.0e-35 151.0 115 67.8
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 7.9e-35 150.6 109 69.7
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 7.9e-35 150.6 116 68.1
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 1.8e-34 149.4 114 68.4
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.8e-34 149.4 114 68.4
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 1.8e-34 149.4 114 68.4
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 2.3e-34 149.1 115 64.3
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 5.1e-34 147.9 117 60.7
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 8.7e-34 147.1 116 65.5
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 5.6e-33 144.4 114 64.9
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 7.4e-33 144.1 114 65.8
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 9.6e-33 143.7 114 64.9
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 9.6e-33 143.7 114 64.9
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 9.6e-33 143.7 114 64.9
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 2.1e-32 142.5 117 61.5
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 2.8e-32 142.1 114 64.9
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 3.7e-32 141.7 111 64.9
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 6.2e-32 141.0 114 64.9
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 8.2e-32 140.6 112 63.4
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 8.2e-32 140.6 114 64.9
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 8.2e-32 140.6 114 64.9
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 8.2e-32 140.6 114 64.9
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 2.4e-31 139.0 95 74.7
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 5.3e-31 137.9 117 59.8
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 6.9e-31 137.5 114 64.0
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 1.2e-30 136.7 111 61.3
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 1.2e-30 136.7 108 64.8
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 3.4e-30 135.2 114 65.8
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 4.5e-30 134.8 115 64.3
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 4.5e-30 134.8 72 95.8
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 7.6e-30 134.0 111 61.3
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 2.2e-29 132.5 115 62.6
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 4.9e-29 131.3 114 60.5
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 4.9e-29 131.3 115 60.9
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.9e-29 131.3 93 71.0
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 8.4e-29 130.6 110 59.1
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 7.9e-27 124.0 114 56.1
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 1.8e-23 112.8 73 78.1
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.1e-23 111.7 68 82.4
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 1.0e-21 107.1 72 75.0
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 1.3e-21 106.7 109 53.2
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 2.2e-21 105.9 124 44.4
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 1.1e-20 103.6 71 71.8
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 3.6e-19 98.6 86 61.6
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 1.3e-16 90.1 72 62.5
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 2.2e-16 89.4 86 62.8
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 5.3e-15 84.7 105 42.9
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 2.0e-14 82.8 115 48.7
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 2.0e-14 82.8 108 40.7
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 2.1e-11 72.8 50 74.0
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 6.7e-10 67.8 94 43.6
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 1.3e-08 63.5 111 40.5
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 2.6e-06 55.8 37 75.7


User provided reference genes

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