Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0315061 Rosa chinensis HOM05D004829 ORTHO05D006212 3.2e-59 231.5 111 100.0
RcHm_v2.0_Chr1g0315031 Rosa chinensis HOM05D004829 ORTHO05D006212 5.4e-51 204.1 126 84.9
RcHm_v2.0_Chr1g0315241 Rosa chinensis HOM05D004829 ORTHO05D006212 1.6e-50 202.6 126 84.1
RcHm_v2.0_Chr1g0315541 Rosa chinensis HOM05D004829 ORTHO05D006212 3.5e-50 201.4 126 83.3
RcHm_v2.0_Chr1g0315311 Rosa chinensis HOM05D004829 ORTHO05D006212 1.0e-49 199.9 126 83.3
RcHm_v2.0_Chr1g0315381 Rosa chinensis HOM05D004829 ORTHO05D006212 1.5e-48 196.1 126 82.5
FAN25G0809 Fragaria x ananassa HOM05D004829 ORTHO05D006212 1.9e-48 195.7 126 81.7
FvH4_3g12850 Fragaria vesca HOM05D004829 ORTHO05D006212 3.6e-47 191.4 126 81.0
FAN11G0705 Fragaria x ananassa HOM05D004829 ORTHO05D006212 3.6e-47 191.4 126 81.0
RcHm_v2.0_Chr5g0020891 Rosa chinensis HOM05D004829 ORTHO05D006212 3.6e-47 191.4 126 81.7
FAN21G1515 Fragaria x ananassa HOM05D004829 ORTHO05D006212 4.7e-47 191.0 126 80.2
RcHm_v2.0_Chr5g0020791 Rosa chinensis HOM05D004829 ORTHO05D006212 2.4e-46 188.7 126 79.4
RcHm_v2.0_Chr1g0315471 Rosa chinensis HOM05D004829 ORTHO05D006212 4.0e-46 188.0 107 89.7
MD10G1228200 Malus domestica HOM05D004829 ORTHO05D006212 2.0e-45 185.7 127 76.4
Prupe.4G116700 Prunus persica HOM05D004829 ORTHO05D006212 4.4e-45 184.5 127 75.6
RcHm_v2.0_Chr1g0315091 Rosa chinensis HOM05D004829 ORTHO05D006212 2.7e-42 175.3 107 83.2
RcHm_v2.0_Chr1g0315201 Rosa chinensis HOM05D004829 ORTHO05D006212 3.5e-42 174.9 107 83.2
RcHm_v2.0_Chr5g0021521 Rosa chinensis HOM05D004829 ORTHO05D006212 6.0e-42 174.1 113 81.4
RcHm_v2.0_Chr1g0315611 Rosa chinensis HOM05D004829 ORTHO05D006212 7.8e-42 173.7 108 81.5
TAR624G1024 Trochodendron aralioides HOM05D004829 ORTHO05D006212 7.8e-42 173.7 126 69.0
Thecc.02G004600 Theobroma cacao HOM05D004829 ORTHO05D006212 3.0e-41 171.8 126 69.0
Cfa000658 Carpinus fangiana HOM05D004829 ORTHO05D006212 5.1e-41 171.0 126 66.7
CANSAT35G0413 Cannabis sativa HOM05D004829 ORTHO05D006212 6.6e-41 170.6 126 67.5
Rhsim02G0252000 Rhododendron simsii HOM05D004829 ORTHO05D006212 8.7e-41 170.2 126 69.0
COL.COLO4_18027 Corchorus olitorius HOM05D004829 ORTHO05D006212 1.9e-40 169.1 126 68.3
Haze_06166 Corylus avellana HOM05D004829 ORTHO05D006212 2.5e-40 168.7 126 65.9
Potri.001G160100 Populus trichocarpa HOM05D004829 ORTHO05D006212 4.3e-40 167.9 126 67.5
QL11p012432 Quercus lobata HOM05D004829 ORTHO05D006212 4.3e-40 167.9 125 66.4
GSVIVG01012140001 Vitis vinifera HOM05D004829 ORTHO05D006212 7.3e-40 167.2 126 68.3
Manes.16G050400 Manihot esculenta HOM05D004829 ORTHO05D006212 1.3e-39 166.4 126 69.0
CSS0024116 Camellia sinensis var. sinensis HOM05D004829 ORTHO05D006212 3.6e-39 164.9 126 66.7
Ciclev10015120m.g Citrus clementina HOM05D004829 ORTHO05D006212 3.6e-39 164.9 125 65.6
Duzib132G0434 Durio zibethinus HOM05D004829 ORTHO05D006212 3.6e-39 164.9 126 67.5
Gohir.A12G049400 Gossypium hirsutum HOM05D004829 ORTHO05D006212 4.8e-39 164.5 126 65.1
Gorai.008G050700 Gossypium raimondii HOM05D004829 ORTHO05D006212 4.8e-39 164.5 126 65.1
PSO541G1671 Papaver somniferum HOM05D004829 ORTHO05D006212 4.8e-39 164.5 126 66.7
DCAR_004342 Daucus carota HOM05D004829 ORTHO05D006212 6.2e-39 164.1 126 65.9
Lj1C1148G3 Lonicera japonica HOM05D004829 ORTHO05D006212 8.1e-39 163.7 126 65.9
PGR004G1679 Punica granatum HOM05D004829 ORTHO05D006212 8.1e-39 163.7 126 64.3
Dinv02919 Davidia involucrata HOM05D004829 ORTHO05D006212 1.1e-38 163.3 127 66.1
Dinv06747 Davidia involucrata HOM05D004829 ORTHO05D006212 1.1e-38 163.3 127 66.1
Lj6g0020245 Lotus japonicus HOM05D004829 ORTHO05D006212 1.1e-38 163.3 122 67.2
PSO675G5466 Papaver somniferum HOM05D004829 ORTHO05D006212 1.4e-38 162.9 126 65.9
Gohir.D12G047800 Gossypium hirsutum HOM05D004829 ORTHO05D006212 1.8e-38 162.5 126 64.3
Aqoxy1G01392 Aquilegia oxysepala HOM05D004829 ORTHO05D006212 4.0e-38 161.4 126 63.5
CAN.G883.4 Capsicum annuum HOM05D004829 ORTHO05D006212 4.0e-38 161.4 126 64.3
Medtr2g035405 Medicago truncatula HOM05D004829 ORTHO05D006212 4.0e-38 161.4 122 66.4
arahy.Tifrunner.gnm1.ann1.503GVQ Arachis hypogaea HOM05D004829 ORTHO05D006212 6.9e-38 160.6 122 65.6
arahy.Tifrunner.gnm1.ann1.84NU8G Arachis hypogaea HOM05D004829 ORTHO05D006212 6.9e-38 160.6 122 65.6
Cc09_g05280 Coffea canephora HOM05D004829 ORTHO05D006212 1.2e-37 159.8 125 66.4
HanXRQChr12g0378241 Helianthus annuus HOM05D004829 ORTHO05D006212 1.2e-37 159.8 126 65.1
Actinidia33705 Actinidia chinensis HOM05D004829 ORTHO05D006212 1.5e-37 159.5 126 64.3
Hma1.2p1_0088F.1_g045100 Hydrangea macrophylla HOM05D004829 ORTHO05D006212 1.5e-37 159.5 126 64.3
PGSC0003DMG400009430 Solanum tuberosum HOM05D004829 ORTHO05D006212 1.5e-37 159.5 125 64.8
THA.LOC104811816 Tarenaya hassleriana HOM05D004829 ORTHO05D006212 1.5e-37 159.5 125 65.6
Lsat_1_v5_gn_5_44281 Lactuca sativa HOM05D004829 ORTHO05D006212 2.6e-37 158.7 126 65.1
Migut.M02005 Erythranthe guttata HOM05D004829 ORTHO05D006212 3.4e-37 158.3 126 62.7
Solyc02g068380.3 Solanum lycopersicum HOM05D004829 ORTHO05D006212 3.4e-37 158.3 126 63.5
ECA246G2495 Erigeron canadensis HOM05D004829 ORTHO05D006212 4.5e-37 157.9 126 64.3
Peaxi162Scf00981g00019 Petunia axillaris HOM05D004829 ORTHO05D006212 4.5e-37 157.9 125 64.0
Sc05g0004770 Simmondsia chinensis HOM05D004829 ORTHO05D006212 4.5e-37 157.9 126 64.3
Carub.0007s2106 Capsella rubella HOM05D004829 ORTHO05D006212 5.8e-37 157.5 126 65.1
Glyma.15G156900 Glycine max HOM05D004829 ORTHO05D006212 5.8e-37 157.5 122 63.9
Ca_01990_v3 Cicer arietinum L. HOM05D004829 ORTHO05D006212 7.6e-37 157.1 122 64.8
AT4G20070 Arabidopsis thaliana HOM05D004829 ORTHO05D006212 9.9e-37 156.8 126 64.3
CARHR226880 Cardamine hirsuta HOM05D004829 ORTHO05D006212 9.9e-37 156.8 126 63.5
Atru.chr10.381 Acer truncatum HOM05D004829 ORTHO05D006212 1.3e-36 156.4 125 64.0
Nitab4.5_0000443g0210 Nicotiana tabacum HOM05D004829 ORTHO05D006212 1.3e-36 156.4 125 62.4
Sabra01G0132000 Salix brachista HOM05D004829 ORTHO05D006212 1.3e-36 156.4 135 61.5
Sopen02g017510 Solanum pennellii HOM05D004829 ORTHO05D006212 1.3e-36 156.4 125 63.2
VMungo1309G0038 Vigna mungo HOM05D004829 ORTHO05D006212 1.7e-36 156.0 122 63.1
ClCG03G004200 Citrullus lanatus HOM05D004829 ORTHO05D006212 2.2e-36 155.6 126 61.9
Sp7g18530 Schrenkiella parvula HOM05D004829 ORTHO05D006212 2.2e-36 155.6 126 62.7
Glyma.09G050800 Glycine max HOM05D004829 ORTHO05D006212 2.9e-36 155.2 122 63.1
Nitab4.5_0000973g0030 Nicotiana tabacum HOM05D004829 ORTHO05D006212 2.9e-36 155.2 125 61.6
AL7G33780 Arabidopsis lyrata HOM05D004829 ORTHO05D006212 3.8e-36 154.8 126 62.7
MELO3C002403.2 Cucumis melo HOM05D004829 ORTHO05D006212 3.8e-36 154.8 126 61.9
Thhalv10024702m.g Eutrema salsugineum HOM05D004829 ORTHO05D006212 3.8e-36 154.8 126 62.7
Lalb_Chr15g0083721 Lupinus albus HOM05D004829 ORTHO05D006212 3.8e-36 154.8 122 63.1
TWI38G0011 Tripterygium wilfordii HOM05D004829 ORTHO05D006212 3.8e-36 154.8 126 59.5
A03p52300 Brassica napus HOM05D004829 ORTHO05D006212 4.9e-36 154.5 126 64.3
C07p50740 Brassica napus HOM05D004829 ORTHO05D006212 4.9e-36 154.5 126 64.3
BraA03t14305Z Brassica rapa HOM05D004829 ORTHO05D006212 4.9e-36 154.5 126 64.3
CsaV3_1G010130 Cucumis sativus L. HOM05D004829 ORTHO05D006212 4.9e-36 154.5 126 61.1
Sed0007455 Sechium edule HOM05D004829 ORTHO05D006212 4.9e-36 154.5 126 60.3
unitig_92.g28192 Utricularia gibba HOM05D004829 ORTHO05D006212 4.9e-36 154.5 125 63.2
RcHm_v2.0_Chr1g0315441 Rosa chinensis HOM05D004829 ORTHO05D006212 6.4e-36 154.1 95 85.3
Hma1.2p1_0088F.1_g045110 Hydrangea macrophylla HOM05D004829 ORTHO05D006212 8.4e-36 153.7 122 63.9
BcaNung03491 Brassica carinata HOM05D004829 ORTHO05D006212 1.1e-35 153.3 126 62.7
BcaC06g30644 Brassica carinata HOM05D004829 ORTHO05D006212 1.9e-35 152.5 126 61.9
BolC7t45575H Brassica oleracea HOM05D004829 ORTHO05D006212 2.4e-35 152.1 126 63.5
SGA_v2.0_scaffold175G39334 Striga asiatica HOM05D004829 ORTHO05D006212 2.4e-35 152.1 126 59.5
TPR.G135 Trifolium pratense HOM05D004829 ORTHO05D006212 3.2e-35 151.8 122 62.3
Lalb_Chr18g0052051 Lupinus albus HOM05D004829 ORTHO05D006212 4.2e-35 151.4 122 63.1
Thhalv10025370m.g Eutrema salsugineum HOM05D004829 ORTHO05D006212 1.2e-34 149.8 125 60.8
Eucgr.D00017 Eucalyptus grandis HOM05D004829 ORTHO05D006212 1.6e-34 149.4 155 54.2
Aa31LG6G2480 Aethionema arabicum HOM05D004829 ORTHO05D006212 2.1e-34 149.1 126 58.7
TWI63G0224 Tripterygium wilfordii HOM05D004829 ORTHO05D006212 2.7e-34 148.7 126 58.7
AUR62042800 Chenopodium quinoa HOM05D004829 ORTHO05D006212 3.5e-34 148.3 125 60.8
EL10Ac7g17240 Beta vulgaris HOM05D004829 ORTHO05D006212 4.6e-34 147.9 125 60.8
AUR62040483 Chenopodium quinoa HOM05D004829 ORTHO05D006212 4.6e-34 147.9 125 60.0
QL11p012412 Quercus lobata HOM05D004829 ORTHO05D006212 1.3e-33 146.4 117 64.1
MSTRG.21238 Avicennia marina HOM05D004829 ORTHO05D006212 1.8e-33 146.0 126 58.7
Hund18001 Selenicereus undatus HOM05D004829 ORTHO05D006212 8.7e-33 143.7 113 64.6
MBI18_g00538_MAGBIO Magnolia biondii HOM05D004829 ORTHO05D006212 1.9e-32 142.5 151 51.0
ATR0752G197 Amborella trichopoda HOM05D004829 ORTHO05D006212 3.7e-31 138.3 123 52.8
RcHm_v2.0_Chr1g0315141 Rosa chinensis HOM05D004829 ORTHO05D006212 1.3e-28 129.8 78 87.2
SEGI_28835 Sequoiadendron giganteum HOM05D004829 ORTHO05D006212 8.4e-28 127.1 124 51.6
RcHm_v2.0_Chr1g0315581 Rosa chinensis HOM05D004829 ORTHO05D006212 9.3e-27 123.6 85 78.8
HPP92_026370 Vanilla planifolia HOM05D004829 ORTHO05D006212 1.2e-26 123.2 120 51.7
Oeu046922.1 Olea europaea HOM05D004829 ORTHO05D006212 2.1e-26 122.5 95 63.2
RcHm_v2.0_Chr5g0021441 Rosa chinensis HOM05D004829 ORTHO05D006212 3.5e-26 121.7 67 89.6
Lalb_Chr02g0154131 Lupinus albus HOM05D004829 ORTHO05D006212 2.5e-24 115.5 91 63.7
RcHm_v2.0_Chr5g0029451 Rosa chinensis HOM05D004829 ORTHO05D006212 4.3e-24 114.8 70 82.9
HPP92_016420 Vanilla planifolia HOM05D004829 ORTHO05D006212 7.4e-24 114.0 120 48.3
Os06g0665500 Oryza sativa ssp. japonica HOM05D004829 ORTHO05D006212 9.0e-22 107.1 123 48.8
Mapoly0026s0071 Marchantia polymorpha HOM05D004829 ORTHO05D006212 1.5e-21 106.3 129 44.2
Zm00001eb389820 Zea mays HOM05D004829 ORTHO05D006212 1.5e-21 106.3 122 48.4
SMO117G0201 Selaginella moellendorffii HOM05D004829 ORTHO05D006212 2.2e-20 102.4 130 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4392 Anthoceros agrestis HOM05D004829 ORTHO05D006212 1.6e-18 96.3 130 41.5
Pp3c13_1740 Physcomitrium patens HOM05D004829 ORTHO05D006212 3.5e-18 95.1 129 41.9
Pp3c3_1160 Physcomitrium patens HOM05D004829 ORTHO05D006212 3.5e-18 95.1 129 39.5
Aqoxy1G01394 Aquilegia oxysepala HOM05D004829 ORTHO05D006212 7.4e-16 87.4 70 62.9
Cre13.g580700 Chlamydomonas reinhardtii HOM05D004829 ORTHO05D006212 7.6e-13 77.4 136 38.2
CDE03G0346 Ceratophyllum demersum HOM05D004829 ORTHO05D006212 7.9e-10 67.4 75 45.3
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 7.9e-10 67.4 98 35.7
RcHm_v2.0_Chr1g0315151 Rosa chinensis HOM05D004829 ORTHO05D006212 3.0e-09 65.5 36 83.3
MCO01G784 Micromonas commoda HOM05D004829 ORTHO05D006212 6.7e-09 64.3 56 51.8
Ah.15g091890 Amaranthus hybridus HOM05D004829 ORTHO05D006212 9.7e-08 60.5 111 34.2
RcHm_v2.0_Chr1g0315591 Rosa chinensis HOM05D004829 ORTHO05D341968 4.1e-06 55.1 23 100.0


User provided reference genes

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