Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0315051 Rosa chinensis HOM05D000071 ORTHO05D000029 1.2e-71 273.5 183 100.0
RcHm_v2.0_Chr1g0315211 Rosa chinensis HOM05D000071 ORTHO05D000029 4.7e-44 181.8 172 74.4
RcHm_v2.0_Chr1g0315251 Rosa chinensis HOM05D000071 ORTHO05D000029 1.2e-42 177.2 172 74.4
RcHm_v2.0_Chr1g0315071 Rosa chinensis HOM05D000071 ORTHO05D000029 1.4e-40 170.2 196 71.4
RcHm_v2.0_Chr1g0315621 Rosa chinensis HOM05D000071 ORTHO05D000029 3.2e-40 169.1 172 78.5
RcHm_v2.0_Chr1g0315321 Rosa chinensis HOM05D000071 ORTHO05D000029 7.1e-40 167.9 172 77.9
RcHm_v2.0_Chr1g0315161 Rosa chinensis HOM05D000071 ORTHO05D000029 6.0e-39 164.9 162 74.7
RcHm_v2.0_Chr6g0275331 Rosa chinensis HOM05D000071 ORTHO05D000029 6.0e-39 164.9 173 67.6
RcHm_v2.0_Chr1g0315481 Rosa chinensis HOM05D000071 ORTHO05D000029 1.7e-38 163.3 162 74.1
RcHm_v2.0_Chr1g0315551 Rosa chinensis HOM05D000071 ORTHO05D000029 6.6e-38 161.4 173 69.9
RcHm_v2.0_Chr1g0315601 Rosa chinensis HOM05D000071 ORTHO05D000029 2.5e-37 159.5 172 76.7
RcHm_v2.0_Chr1g0315391 Rosa chinensis HOM05D000071 ORTHO05D000029 1.1e-35 154.1 172 75.0
RcHm_v2.0_Chr1g0315451 Rosa chinensis HOM05D000071 ORTHO05D000029 2.0e-34 149.8 159 73.0
FAN16G0359 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.6e-31 140.2 172 64.0
FAN16G3241 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.6e-31 140.2 172 64.0
FAN11G1904 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.4e-27 126.3 85 75.3
FAN16G2150 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.2e-26 124.0 172 65.1
FAN21G3469 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.4e-26 122.5 172 65.7
FAN25G3514 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.9e-25 119.4 81 75.3
FAN25G3142 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.2e-23 114.0 172 62.8
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 7.9e-23 111.3 165 64.8
RcHm_v2.0_Chr5g0029441 Rosa chinensis HOM05D000071 ORTHO05D000029 1.0e-22 110.9 172 58.1
FAN25G0406 Fragaria x ananassa HOM05D000071 ORTHO05D000029 6.7e-22 108.2 172 61.6
FAN21G1206 Fragaria x ananassa HOM05D000071 ORTHO05D000029 8.2e-20 101.3 181 53.0
FAN21G3949 Fragaria x ananassa HOM05D000071 ORTHO05D000029 8.2e-20 101.3 181 53.0
FAN11G2193 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.1e-19 100.9 85 65.9
RcHm_v2.0_Chr5g0021531 Rosa chinensis HOM05D000071 ORTHO05D000029 5.3e-19 98.6 163 60.1
RcHm_v2.0_Chr5g0021451 Rosa chinensis HOM05D000071 ORTHO05D000029 1.5e-18 97.1 161 61.5
FvH4_3g12670 Fragaria vesca HOM05D000071 ORTHO05D000029 8.4e-17 91.3 56 76.8
RcHm_v2.0_Chr5g0020901 Rosa chinensis HOM05D000071 ORTHO05D000029 8.4e-17 91.3 172 57.0
FAN25G3387 Fragaria x ananassa HOM05D000071 ORTHO05D000029 8.7e-14 81.3 55 72.7
RcHm_v2.0_Chr7g0219061 Rosa chinensis HOM05D000071 ORTHO05D000029 8.7e-14 81.3 176 36.9
MD05G1236300 Malus domestica HOM05D000071 ORTHO05D000029 1.3e-12 77.4 170 51.2
Sed0005945 Sechium edule HOM05D000071 ORTHO05D000029 2.4e-11 73.2 162 34.0
FAN21G1392 Fragaria x ananassa HOM05D000071 ORTHO05D000029 6.9e-11 71.6 180 32.8
RcHm_v2.0_Chr5g0022361 Rosa chinensis HOM05D000071 ORTHO05D000029 2.6e-10 69.7 74 51.4
FAN25G2035 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.5e-10 68.9 180 32.8
FAN25G3618 Fragaria x ananassa HOM05D000071 ORTHO05D014638 4.5e-10 68.9 110 40.9
QL93p0310_0045 Quercus lobata HOM05D000071 ORTHO05D000029 4.5e-10 68.9 110 42.7
Prupe.4G123100 Prunus persica HOM05D000071 ORTHO05D000029 5.9e-10 68.6 171 51.5
RcHm_v2.0_Chr5g0021931 Rosa chinensis HOM05D000071 ORTHO05D000029 7.7e-10 68.2 186 44.1
Thecc.04G034100 Theobroma cacao HOM05D000071 ORTHO05D000029 7.7e-10 68.2 163 31.3
RcHm_v2.0_Chr5g0020971 Rosa chinensis HOM05D000071 ORTHO05D000029 1.0e-09 67.8 56 55.4
SGA_v2.0_scaffold89G27396 Striga asiatica HOM05D000071 ORTHO05D000029 1.7e-09 67.0 105 42.9
GSVIVG01033116001 Vitis vinifera HOM05D000071 ORTHO05D000029 3.8e-09 65.9 111 36.9
MD05G1235900 Malus domestica HOM05D000071 ORTHO05D000029 1.1e-08 64.3 75 50.7
MD05G1225300 Malus domestica HOM05D000071 ORTHO05D000029 1.4e-08 63.9 51 58.8
Prupe.4G131600 Prunus persica HOM05D000071 ORTHO05D000029 1.9e-08 63.5 52 63.5
MD10G1221400 Malus domestica HOM05D000071 ORTHO05D000029 4.2e-08 62.4 57 54.4
CAN.G939.2 Capsicum annuum HOM05D001705 ORTHO05D010003 5.5e-08 62.0 111 33.3
FvH4_3g12770 Fragaria vesca HOM05D000071 ORTHO05D000029 5.5e-08 62.0 156 53.2
MD10G1222900 Malus domestica HOM05D000071 ORTHO05D000029 5.5e-08 62.0 57 54.4
FAN08G1256 Fragaria x ananassa HOM05D000071 ORTHO05D000029 9.4e-08 61.2 70 48.6
Oeu004716.4 Olea europaea HOM05D000071 ORTHO05D000029 9.4e-08 61.2 67 46.3
CSS0039606 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 1.2e-07 60.8 143 52.4
Ciclev10018220m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.2e-07 60.8 102 36.3
RcHm_v2.0_Chr3g0470501 Rosa chinensis HOM05D000071 ORTHO05D000029 1.2e-07 60.8 163 29.4
Sabra12G0004900 Salix brachista HOM05D000053 ORTHO05D000035 1.2e-07 60.8 74 52.7
FAN11G1089 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.6e-07 60.5 76 44.7
ClCG02G005890 Citrullus lanatus HOM05D000106 ORTHO05D003154 2.1e-07 60.1 76 48.7
FvH4_3g13620 Fragaria vesca HOM05D000071 ORTHO05D000029 2.1e-07 60.1 59 45.8
FAN25G0116 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.1e-07 60.1 156 51.9
Oeu049764.4 Olea europaea HOM05D000071 ORTHO05D000029 2.1e-07 60.1 60 48.3
MD05G1245800 Malus domestica HOM05D000071 ORTHO05D000029 2.7e-07 59.7 53 52.8
CSS0002520 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 3.6e-07 59.3 82 43.9
ECA238G2668 Erigeron canadensis HOM05D000053 ORTHO05D000035 3.6e-07 59.3 101 37.6
Migut.B00345 Erythranthe guttata HOM05D000106 ORTHO05D003154 3.6e-07 59.3 76 44.7
QL07p034607 Quercus lobata HOM05D000053 ORTHO05D000448 3.6e-07 59.3 111 35.1
CAN.G442.11 Capsicum annuum HOM05D001705 ORTHO05D010003 4.6e-07 58.9 111 33.3
FAN16G2083 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.6e-07 58.9 153 35.3
FAN16G0705 Fragaria x ananassa HOM05D000071 ORTHO05D000029 6.1e-07 58.5 156 51.9
FAN16G2670 Fragaria x ananassa HOM05D000071 ORTHO05D000029 6.1e-07 58.5 172 49.4
Gorai.002G060500 Gossypium raimondii HOM05D000053 ORTHO05D000035 6.1e-07 58.5 75 42.7
Potri.003G020600 Populus trichocarpa HOM05D000033 ORTHO05D010114 6.1e-07 58.5 109 36.7
QL11p011800 Quercus lobata HOM05D000071 ORTHO05D000029 6.1e-07 58.5 63 52.4
Lj4g0007024 Lotus japonicus HOM05D000106 ORTHO05D003154 7.9e-07 58.2 82 43.9
MD05G1246300 Malus domestica HOM05D000071 ORTHO05D000029 7.9e-07 58.2 53 52.8
TPR.G12130 Trifolium pratense HOM05D000033 ORTHO05D001317 7.9e-07 58.2 106 36.8
Sc24g0002800 Simmondsia chinensis HOM05D000029 ORTHO05D000854 1.0e-06 57.8 75 42.7
Hma1.2p1_1011F.1_g247580 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.4e-06 57.4 71 47.9
MD05G1225100 Malus domestica HOM05D000071 ORTHO05D000029 1.4e-06 57.4 45 57.8
MD10G1221600 Malus domestica HOM05D000071 ORTHO05D000029 1.4e-06 57.4 59 50.8
PGR102G3346 Punica granatum HOM05D000053 ORTHO05D000035 1.4e-06 57.4 122 32.8
Gohir.D05G296800 Gossypium hirsutum HOM05D000021 ORTHO05D000010 1.8e-06 57.0 93 40.9
Gorai.009G313800 Gossypium raimondii HOM05D000021 ORTHO05D000010 1.8e-06 57.0 93 40.9
Sabra12G0005000 Salix brachista HOM05D000053 ORTHO05D000035 1.8e-06 57.0 74 50.0
Thecc.02G100500 Theobroma cacao HOM05D000106 ORTHO05D003154 1.8e-06 57.0 78 46.2
COL.COLO4_17185 Corchorus olitorius HOM05D000071 ORTHO05D000029 2.3e-06 56.6 75 49.3
CsaV3_7G008640 Cucumis sativus L. HOM05D000106 ORTHO05D003154 2.3e-06 56.6 76 46.1
FAN16G0987 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.3e-06 56.6 121 33.1
FAN25G1389 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.3e-06 56.6 55 50.9
Gohir.D01G042100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.3e-06 56.6 96 37.5
Hma1.2p1_0609F.1_g188370 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 2.3e-06 56.6 66 47.0
MD07G1168700 Malus domestica HOM05D000021 ORTHO05D000010 2.3e-06 56.6 107 41.1
MD10G1222500 Malus domestica HOM05D000071 ORTHO05D000029 2.3e-06 56.6 59 50.8
Manes.01G180300 Manihot esculenta HOM05D000053 ORTHO05D000035 2.3e-06 56.6 111 34.2
Medtr1g009270 Medicago truncatula HOM05D000033 ORTHO05D001317 2.3e-06 56.6 106 35.8
PGR083G0493 Punica granatum HOM05D000053 ORTHO05D000035 2.3e-06 56.6 77 44.2
Cc02_g18750 Coffea canephora HOM05D000106 ORTHO05D003154 3.0e-06 56.2 74 48.6
FAN25G1875 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.0e-06 56.2 55 47.3
MD05G1246500 Malus domestica HOM05D000071 ORTHO05D000029 3.0e-06 56.2 51 52.9
MD09G1125600 Malus domestica HOM05D000053 ORTHO05D000035 3.0e-06 56.2 116 37.9
MD10G1228000 Malus domestica HOM05D000071 ORTHO05D000029 3.0e-06 56.2 54 50.0
Phvul.003G292500 Phaseolus vulgaris HOM05D000106 ORTHO05D003154 3.0e-06 56.2 76 43.4
AT5G44700 Arabidopsis thaliana HOM05D000029 ORTHO05D006401 3.9e-06 55.8 80 42.5
Cfa001864 Carpinus fangiana HOM05D000021 ORTHO05D000010 3.9e-06 55.8 105 37.1
FvH4_3g13600 Fragaria vesca HOM05D000071 ORTHO05D000029 3.9e-06 55.8 55 47.3
Hma1.2p1_0017F.1_g011350 Hydrangea macrophylla HOM05D000311 ORTHO05D000183 3.9e-06 55.8 105 40.0
MD05G1237200 Malus domestica HOM05D000071 ORTHO05D000029 3.9e-06 55.8 45 60.0
QL04p093573 Quercus lobata HOM05D000071 ORTHO05D000029 3.9e-06 55.8 55 52.7
RcHm_v2.0_Chr5g0022291 Rosa chinensis HOM05D000071 ORTHO05D000029 3.9e-06 55.8 48 60.4
CiPaw.05G209900 Carya illinoinensis HOM05D000071 ORTHO05D000029 5.1e-06 55.5 107 35.5
MD05G1248100 Malus domestica HOM05D000071 ORTHO05D000029 5.1e-06 55.5 57 52.6
MD09G1125300 Malus domestica HOM05D000053 ORTHO05D000035 5.1e-06 55.5 108 38.9
MD12G1020100 Malus domestica HOM05D000071 ORTHO05D000029 5.1e-06 55.5 46 58.7
RcHm_v2.0_Chr5g0022701 Rosa chinensis HOM05D000071 ORTHO05D000029 5.1e-06 55.5 160 48.1
Sp2g09510 Schrenkiella parvula HOM05D000029 ORTHO05D006401 5.1e-06 55.5 80 45.0
AL3G15890 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 6.7e-06 55.1 104 38.5
BolC8t52731H Brassica oleracea HOM05D000053 ORTHO05D000035 6.7e-06 55.1 95 41.1
Ciclev10030623m.g Citrus clementina HOM05D000053 ORTHO05D000448 6.7e-06 55.1 111 32.4
DCAR_025549 Daucus carota HOM05D000021 ORTHO05D000010 6.7e-06 55.1 116 35.3
Duzib268G0914 Durio zibethinus HOM05D000053 ORTHO05D000035 6.7e-06 55.1 105 38.1
Gorai.009G049000 Gossypium raimondii HOM05D000029 ORTHO05D008509 6.7e-06 55.1 106 37.7
Lalb_Chr07g0184701 Lupinus albus HOM05D000094 ORTHO05D001414 6.7e-06 55.1 77 45.5
MD10G1223100 Malus domestica HOM05D000071 ORTHO05D000029 6.7e-06 55.1 59 49.2
Prupe.6G009700 Prunus persica HOM05D001506 ORTHO05D000455 6.7e-06 55.1 106 33.0
RcHm_v2.0_Chr5g0082581 Rosa chinensis HOM05D001506 ORTHO05D000455 6.7e-06 55.1 136 34.6
Actinidia39594 Actinidia chinensis HOM05D000021 ORTHO05D000010 8.8e-06 54.7 93 41.9
BcaB02g06491 Brassica carinata HOM05D000940 ORTHO05D000782 8.8e-06 54.7 129 29.5
BcaC09g48434 Brassica carinata HOM05D000021 ORTHO05D000010 8.8e-06 54.7 113 38.9
A09p03560 Brassica napus HOM05D001042 ORTHO05D007836 8.8e-06 54.7 104 37.5
C01p49820 Brassica napus HOM05D000021 ORTHO05D000010 8.8e-06 54.7 113 38.9
C05p12210 Brassica napus HOM05D000940 ORTHO05D000782 8.8e-06 54.7 129 29.5
BolC1t04940H Brassica oleracea HOM05D000021 ORTHO05D000010 8.8e-06 54.7 113 38.9
CSS0017287 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 8.8e-06 54.7 70 42.9
COL.COLO4_25513 Corchorus olitorius HOM05D000053 ORTHO05D000035 8.8e-06 54.7 98 40.8
COL.COLO4_36236 Corchorus olitorius HOM05D002120 ORTHO05D010003 8.8e-06 54.7 87 39.1
CsaV3_4G009350 Cucumis sativus L. HOM05D000033 ORTHO05D010114 8.8e-06 54.7 101 37.6
Duzib150G1162 Durio zibethinus HOM05D000311 ORTHO05D000183 8.8e-06 54.7 80 43.8
FAN04G2742 Fragaria x ananassa HOM05D000071 ORTHO05D000029 8.8e-06 54.7 157 47.1
Glyma.07G212200 Glycine max HOM05D000106 ORTHO05D003154 8.8e-06 54.7 82 42.7
Glyma.17G182166 Glycine max HOM05D000071 ORTHO05D000029 8.8e-06 54.7 88 39.8
Thecc.07G114600 Theobroma cacao HOM05D000053 ORTHO05D000035 8.8e-06 54.7 108 37.0


User provided reference genes

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