Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 1.2e-56 223.0 119 100.0
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 1.3e-53 213.0 120 96.7
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 3.6e-53 211.5 120 95.8
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 1.1e-52 209.9 118 95.8
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 1.1e-52 209.9 120 95.8
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.9e-50 201.8 118 90.7
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 6.4e-50 200.7 120 90.8
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 8.4e-50 200.3 117 91.5
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 2.9e-42 175.3 112 83.0
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 4.9e-42 174.5 117 76.9
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 3.2e-41 171.8 112 80.4
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 3.2e-41 171.8 117 77.8
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 2.1e-40 169.1 114 77.2
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 2.7e-40 168.7 112 79.5
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.5e-40 168.3 114 77.2
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 1.8e-39 166.0 117 72.6
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 5.1e-39 164.5 114 73.7
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 8.7e-39 163.7 112 76.8
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 1.1e-38 163.3 116 71.6
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 1.5e-38 162.9 112 75.9
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 2.5e-38 162.2 114 74.6
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 2.5e-38 162.2 114 73.7
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 3.3e-38 161.8 110 76.4
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 4.3e-38 161.4 112 75.0
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 5.6e-38 161.0 114 72.8
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 5.6e-38 161.0 114 75.4
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 7.4e-38 160.6 112 73.2
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 9.6e-38 160.2 114 73.7
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 1.3e-37 159.8 116 72.4
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 3.7e-37 158.3 120 70.0
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 4.8e-37 157.9 117 70.1
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 1.8e-36 156.0 112 75.0
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 2.4e-36 155.6 120 69.2
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 2.4e-36 155.6 117 68.4
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.4e-36 155.6 117 69.2
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 3.1e-36 155.2 114 71.1
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 4.0e-36 154.8 114 71.9
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 9.0e-36 153.7 110 72.7
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 1.2e-35 153.3 112 71.4
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 1.2e-35 153.3 117 68.4
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.2e-35 153.3 111 73.0
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 1.2e-35 153.3 120 67.5
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 2.0e-35 152.5 111 73.0
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.4e-35 151.8 111 71.2
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 5.8e-35 151.0 112 70.5
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 7.6e-35 150.6 112 67.9
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 7.6e-35 150.6 111 70.3
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 7.6e-35 150.6 112 67.9
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 1.3e-34 149.8 101 76.2
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 1.3e-34 149.8 119 66.4
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 2.2e-34 149.1 117 68.4
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 2.2e-34 149.1 119 65.5
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 2.9e-34 148.7 119 69.7
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 2.9e-34 148.7 119 69.7
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 2.9e-34 148.7 116 68.1
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 4.9e-34 147.9 119 64.7
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 1.1e-33 146.7 111 68.5
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 2.5e-33 145.6 109 69.7
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 5.5e-33 144.4 115 67.0
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 1.6e-32 142.9 116 66.4
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 2.7e-32 142.1 114 67.5
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 2.7e-32 142.1 114 67.5
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 2.7e-32 142.1 114 67.5
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 2.7e-32 142.1 117 60.7
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 4.6e-32 141.4 115 62.6
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 1.8e-31 139.4 116 63.8
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 3.0e-31 138.7 120 60.8
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 8.7e-31 137.1 114 64.0
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 1.5e-30 136.3 114 64.0
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 1.5e-30 136.3 114 64.0
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 1.5e-30 136.3 114 64.0
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 1.9e-30 136.0 114 64.0
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 2.5e-30 135.6 111 64.0
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 4.3e-30 134.8 114 64.0
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 7.4e-30 134.0 112 62.5
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 7.4e-30 134.0 120 59.2
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.3e-29 133.3 114 64.0
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 1.3e-29 133.3 114 63.2
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 1.3e-29 133.3 114 64.0
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 1.3e-29 133.3 114 64.0
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 4.8e-29 131.3 72 93.1
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 6.2e-29 131.0 95 72.6
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 1.1e-28 130.2 114 63.2
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 1.8e-28 129.4 108 63.0
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 2.4e-28 129.0 111 59.5
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 2.4e-28 129.0 115 64.3
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 9.0e-28 127.1 114 64.0
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 1.2e-27 126.7 115 62.6
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 1.5e-27 126.3 111 59.5
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 2.6e-27 125.6 115 60.9
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.4e-27 125.2 93 69.9
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 7.6e-27 124.0 114 59.6
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 1.0e-26 123.6 110 57.3
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 1.6e-24 116.3 114 54.4
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 5.1e-23 111.3 73 76.7
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.5e-22 109.8 68 80.9
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 3.7e-21 105.1 72 73.6
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 1.4e-20 103.2 124 45.2
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 4.1e-20 101.7 71 70.4
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 2.0e-19 99.4 109 51.4
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.0e-18 97.1 105 54.3
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 4.6e-16 88.2 72 61.1
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.5e-14 83.2 86 61.6
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 1.1e-12 77.0 105 41.0
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 3.1e-12 75.5 115 47.8
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 4.1e-12 75.1 108 38.9
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 1.1e-09 67.0 50 72.0
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 1.2e-08 63.5 94 43.6
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 5.1e-07 58.2 112 38.4


User provided reference genes

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