Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 8.4e-207 723.4 351 100.0
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 9.6e-195 683.3 353 93.8
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.6e-195 683.3 353 93.8
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.8e-194 681.8 353 93.5
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.8e-194 681.0 359 91.6
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-193 679.9 355 93.0
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.5e-183 644.0 446 74.2
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 7.2e-182 640.6 348 88.5
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 2.1e-181 639.0 348 88.8
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 9.1e-177 623.6 365 82.7
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 3.4e-176 621.7 362 84.0
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 7.7e-176 620.5 362 83.7
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 2.9e-175 618.6 363 82.1
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 6.5e-175 617.5 364 81.6
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.1e-174 616.7 362 83.1
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.9e-174 615.9 360 83.1
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 2.5e-174 615.5 357 82.6
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 3.2e-174 615.1 349 84.2
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 3.2e-174 615.1 347 85.3
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.2e-173 613.2 364 81.0
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 3.6e-173 611.7 356 82.3
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 4.7e-173 611.3 371 80.3
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.0e-172 610.1 360 82.2
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.4e-172 609.8 362 82.0
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.4e-172 609.8 362 82.0
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 1.4e-172 609.8 347 84.4
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.8e-172 609.4 346 84.4
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 1.8e-172 609.4 347 84.7
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.3e-172 609.0 362 81.2
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 5.1e-172 607.8 354 82.5
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.1e-172 607.8 365 80.0
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 6.7e-172 607.4 348 83.3
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.1e-171 606.7 358 81.6
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 1.1e-171 606.7 364 80.5
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 1.5e-171 606.3 356 81.5
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 2.0e-171 605.9 351 82.3
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 5.7e-171 604.4 359 80.2
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 7.4e-171 604.0 357 82.4
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 9.7e-171 603.6 360 80.6
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.8e-170 602.1 361 80.3
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 8.2e-170 600.5 361 80.1
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 1.4e-169 599.7 362 80.1
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 1.8e-169 599.4 360 80.0
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 2.4e-169 599.0 362 80.1
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 3.1e-169 598.6 367 79.3
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 3.1e-169 598.6 361 78.9
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 4.1e-169 598.2 361 80.9
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 4.1e-169 598.2 388 76.5
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 4.1e-169 598.2 353 81.9
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 5.3e-169 597.8 352 81.2
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 9.1e-169 597.0 364 80.8
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.2e-168 596.7 361 78.7
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.5e-168 596.3 360 79.4
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 7.7e-168 594.0 360 79.4
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.0e-167 593.6 351 80.6
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.0e-167 593.6 358 80.2
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.0e-167 593.6 367 79.0
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.7e-167 592.8 365 77.5
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.7e-167 592.8 363 78.8
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 2.2e-167 592.4 360 78.3
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 2.2e-167 592.4 362 79.6
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.2e-167 592.4 365 77.3
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.2e-167 592.4 365 77.3
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 3.8e-167 591.7 353 80.7
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.8e-167 591.7 350 81.7
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.8e-167 591.7 353 80.5
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 8.5e-167 590.5 359 79.7
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.1e-166 590.1 350 80.6
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.9e-166 589.3 353 81.6
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.9e-166 589.3 349 80.5
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.9e-166 589.3 355 80.0
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 5.5e-166 587.8 357 79.3
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 9.4e-166 587.0 360 78.9
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 9.4e-166 587.0 356 79.2
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 9.4e-166 587.0 356 79.2
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.6e-165 586.3 364 77.5
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 2.1e-165 585.9 353 79.9
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.1e-165 585.9 345 80.9
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 3.6e-165 585.1 356 78.7
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 4.7e-165 584.7 352 79.8
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 6.1e-165 584.3 354 80.2
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 1.8e-164 582.8 359 77.7
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.8e-164 582.8 361 77.0
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 6.7e-164 580.9 378 74.6
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.5e-163 579.7 356 78.4
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 2.6e-163 578.9 365 74.5
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 4.4e-163 578.2 353 78.5
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 5.7e-163 577.8 356 78.4
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 5.7e-163 577.8 364 76.4
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 2.2e-162 575.9 355 77.5
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 3.7e-162 575.1 357 76.5
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 4.8e-162 574.7 354 77.1
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.3e-159 566.6 418 70.1
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 2.3e-156 555.8 368 72.8
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 9.7e-155 550.4 325 81.5
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 3.7e-154 548.5 352 74.7
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 6.3e-154 547.7 438 65.3
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.6e-152 543.1 348 74.7
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 4.5e-152 541.6 453 61.4
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 9.4e-150 533.9 371 70.1
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 4.7e-149 531.6 360 70.6
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.5e-147 526.6 357 68.6
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.7e-146 523.1 359 68.8
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.7e-146 523.1 276 90.9
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 3.7e-146 521.9 360 68.1
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 8.3e-146 520.8 387 69.3
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 8.3e-146 520.8 359 68.0
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.4e-145 519.2 361 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 1.3e-143 513.5 361 66.5
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.5e-142 509.2 362 64.9
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.0e-140 503.8 355 66.2
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 1.4e-140 503.4 357 65.3
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 2.7e-136 489.2 350 64.6
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 6.6e-135 484.6 257 89.1
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 5.2e-132 474.9 519 49.9
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.5e-126 456.8 335 63.3
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.2e-123 447.2 344 67.2
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 7.5e-123 444.5 269 78.1
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 3.2e-113 412.5 273 73.3
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.1e-105 384.8 344 55.8
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 7.1e-105 384.8 344 55.8
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 6.2e-101 371.7 255 67.8
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 2.6e-99 366.3 350 52.3
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 9.0e-84 314.7 271 60.9
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.4e-81 307.4 193 77.2
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 1.0e-79 301.2 164 85.4
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.8e-79 300.4 223 64.1
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.8e-79 300.4 162 86.4
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.3e-79 300.1 180 80.0
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 2.4e-76 290.0 179 74.9
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 7.9e-72 275.0 177 75.1
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 4.5e-67 259.2 344 44.2
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.8e-53 213.4 118 87.3
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 1.8e-52 210.7 174 59.2
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 2.9e-50 203.4 170 61.8
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.2e-45 187.2 106 79.2
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 4.7e-40 169.5 90 88.9
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.2e-37 160.6 107 74.8
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.8e-26 123.2 206 36.9
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 1.2e-22 111.7 88 64.8
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 4.1e-20 103.2 62 74.2
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 4.1e-20 103.2 112 52.7
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.6e-19 101.3 77 62.3
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.7e-18 97.8 55 78.2
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.9e-18 97.1 225 29.8
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 8.0e-16 89.0 81 56.8
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 2.3e-15 87.4 48 83.3
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 4.4e-14 83.2 52 75.0
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 6.0e-11 72.8 74 48.6
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 5.2e-07 59.7 36 75.0
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 5.8e-06 56.2 43 55.8


User provided reference genes

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