Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 5.8e-62 240.7 124 100.0
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 4.6e-59 231.1 124 96.8
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 6.0e-59 230.7 123 96.7
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 2.1e-56 222.2 124 93.5
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-50 203.4 119 89.1
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 2.3e-50 202.2 119 88.2
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.3e-50 202.2 119 88.2
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.3e-50 202.2 119 88.2
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.9e-50 201.4 119 88.2
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.3e-48 194.1 119 86.6
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 5.9e-46 187.6 119 79.8
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 3.8e-45 184.9 119 79.8
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 8.5e-45 183.7 119 80.7
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 3.0e-42 175.3 118 75.4
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.1e-42 174.5 121 76.0
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 5.1e-42 174.5 105 88.6
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 6.7e-42 174.1 119 77.3
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.5e-41 172.9 118 74.6
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 2.0e-41 172.6 118 74.6
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.3e-41 171.8 119 76.5
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.4e-41 170.6 118 76.3
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-40 169.9 121 73.6
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.2e-40 169.1 118 73.7
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 3.7e-40 168.3 118 72.0
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 4.8e-40 167.9 118 72.0
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 4.8e-40 167.9 118 72.0
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 8.2e-40 167.2 118 74.6
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 8.2e-40 167.2 118 73.7
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 8.2e-40 167.2 118 73.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.1e-39 166.8 118 72.0
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 2.4e-39 165.6 118 71.2
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.4e-39 165.6 118 72.0
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 2.4e-39 165.6 118 73.7
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 2.4e-39 165.6 118 72.9
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 3.1e-39 165.2 118 68.6
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 3.1e-39 165.2 118 68.6
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 3.1e-39 165.2 118 73.7
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 4.1e-39 164.9 118 74.6
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 4.1e-39 164.9 118 72.9
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 6.9e-39 164.1 118 72.0
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.9e-39 164.1 118 71.2
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 9.1e-39 163.7 118 74.6
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 9.1e-39 163.7 118 68.6
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 1.2e-38 163.3 118 69.5
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.5e-38 162.9 118 68.6
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.5e-38 162.9 118 68.6
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.5e-38 162.9 118 69.5
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 1.5e-38 162.9 121 66.9
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 3.4e-38 161.8 118 71.2
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 4.5e-38 161.4 116 69.0
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 4.5e-38 161.4 118 68.6
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 5.9e-38 161.0 118 70.3
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 5.9e-38 161.0 118 67.8
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 5.9e-38 161.0 118 66.9
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 5.9e-38 161.0 118 68.6
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 7.7e-38 160.6 118 68.6
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 7.7e-38 160.6 117 67.5
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 7.7e-38 160.6 118 66.9
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 7.7e-38 160.6 117 69.2
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 1.3e-37 159.8 118 69.5
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 1.7e-37 159.5 118 67.8
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.7e-37 159.5 118 67.8
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 3.8e-37 158.3 118 65.3
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 5.0e-37 157.9 118 67.8
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 6.5e-37 157.5 118 66.1
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 6.5e-37 157.5 118 67.8
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 1.1e-36 156.8 118 66.9
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.1e-36 156.8 118 67.8
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.9e-36 156.0 118 64.4
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 3.2e-36 155.2 121 64.5
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 3.2e-36 155.2 118 67.8
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 4.2e-36 154.8 118 66.9
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 4.2e-36 154.8 118 66.9
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 9.4e-36 153.7 118 66.1
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.2e-35 153.3 117 64.1
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.6e-35 152.9 119 65.5
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 2.1e-35 152.5 121 64.5
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 2.1e-35 152.5 118 66.9
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 2.7e-35 152.1 121 63.6
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 2.7e-35 152.1 118 63.6
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 2.7e-35 152.1 118 63.6
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 2.7e-35 152.1 118 66.1
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 4.7e-35 151.4 121 63.6
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 4.7e-35 151.4 121 63.6
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 6.1e-35 151.0 118 66.1
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 6.1e-35 151.0 118 66.1
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 7.9e-35 150.6 121 64.5
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.0e-34 150.2 119 62.2
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.4e-34 149.8 118 64.4
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 1.4e-34 149.8 121 62.8
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.8e-34 149.4 118 64.4
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.8e-34 149.4 118 64.4
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 3.0e-34 148.7 121 62.8
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 3.9e-34 148.3 111 68.5
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 3.9e-34 148.3 118 66.1
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 3.9e-34 148.3 118 63.6
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 5.1e-34 147.9 118 64.4
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.1e-34 147.9 106 74.5
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 8.8e-34 147.1 121 62.0
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.1e-33 146.7 118 61.9
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.5e-33 146.4 118 61.0
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.5e-33 146.4 121 62.0
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 2.0e-33 146.0 118 61.0
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 4.4e-33 144.8 118 65.3
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 4.4e-33 144.8 121 61.2
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 9.7e-33 143.7 118 62.7
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 9.7e-33 143.7 121 60.3
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 9.7e-33 143.7 121 60.3
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 9.7e-33 143.7 121 60.3
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.3e-32 143.3 125 60.0
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 1.3e-32 143.3 118 64.4
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 1.7e-32 142.9 118 60.2
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 9.1e-31 137.1 117 59.8
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.6e-30 136.3 117 59.8
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 3.5e-30 135.2 118 57.6
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 1.0e-29 133.7 118 56.8
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 2.2e-29 132.5 118 55.1
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 2.9e-29 132.1 121 53.7
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.1e-28 130.2 118 55.1
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 1.4e-26 123.2 117 53.0
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 1.4e-26 123.2 120 52.5
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 1.5e-25 119.8 118 53.4
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 4.4e-25 118.2 118 55.1
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 2.4e-23 112.5 117 51.3
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 4.1e-23 111.7 117 48.7
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.0e-22 109.4 103 58.3
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.2e-21 105.9 67 85.1
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.4e-17 91.7 50 96.0
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-15 85.9 43 95.3
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 4.5e-14 81.6 126 42.9
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 5.9e-14 81.3 121 39.7
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 6.5e-13 77.8 126 42.9
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-09 64.7 96 37.5
RcHm_v2.0_Chr7g0226011 Rosa chinensis HOM05D004469 ORTHO05D345385 2.8e-08 62.4 35 91.4


User provided reference genes

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