Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0313621 Rosa chinensis HOM05D004867 ORTHO05D005729 5.4e-204 714.1 372 100.0
FvH4_7g00210 Fragaria vesca HOM05D004867 ORTHO05D005729 8.4e-181 637.1 373 89.8
FAN10G1317 Fragaria x ananassa HOM05D000038 ORTHO05D005729 2.7e-179 632.1 370 89.7
FAN06G4114 Fragaria x ananassa HOM05D004867 ORTHO05D005729 2.5e-177 625.5 365 90.1
FAN03G1960 Fragaria x ananassa HOM05D004867 ORTHO05D005729 2.4e-175 619.0 364 89.3
FAN01G2199 Fragaria x ananassa HOM05D004867 ORTHO05D005729 1.3e-173 613.2 372 87.6
Prupe.2G004800 Prunus persica HOM05D004867 ORTHO05D005729 6.5e-141 504.6 392 72.4
MD14G1085700 Malus domestica HOM05D004867 ORTHO05D005729 1.6e-110 403.7 341 69.8
Atru.chr11.2686 Acer truncatum HOM05D004867 ORTHO05D005729 1.1e-108 397.5 390 60.0
Ciclev10030862m.g Citrus clementina HOM05D004867 ORTHO05D005729 1.4e-106 390.6 380 60.3
CiPaw.13G001300 Carya illinoinensis HOM05D004867 ORTHO05D005729 2.3e-106 389.8 386 62.7
Cpa.g.sc189.30 Carica papaya HOM05D004867 ORTHO05D005729 3.0e-106 389.4 393 59.3
Cfa010718 Carpinus fangiana HOM05D004867 ORTHO05D005729 1.5e-105 387.1 391 59.6
Haze_03260 Corylus avellana HOM05D004867 ORTHO05D005729 1.0e-101 374.4 392 58.9
QL04p002433 Quercus lobata HOM05D004867 ORTHO05D005729 2.5e-100 369.8 382 57.9
QL04p000390 Quercus lobata HOM05D004867 ORTHO05D005729 5.6e-100 368.6 382 57.9
CANSAT11G0209 Cannabis sativa HOM05D004867 ORTHO05D005729 8.0e-99 364.8 392 59.9
CSS0003709 Camellia sinensis var. sinensis HOM05D004867 ORTHO05D005729 3.2e-95 352.8 393 55.5
Thecc.01G415900 Theobroma cacao HOM05D004867 ORTHO05D005729 1.5e-92 344.0 385 54.0
GSVIVG01001400001 Vitis vinifera HOM05D004867 ORTHO05D005729 2.5e-92 343.2 388 54.6
TAR369G0777 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.2e-91 340.9 393 54.5
Manes.07G001200 Manihot esculenta HOM05D004867 ORTHO05D005729 1.8e-90 337.0 393 52.7
Duzib138G1711 Durio zibethinus HOM05D004867 ORTHO05D005729 2.3e-90 336.7 387 52.5
Potri.001G228100 Populus trichocarpa HOM05D004867 ORTHO05D005729 3.1e-90 336.3 392 54.6
PGR031G3548 Punica granatum HOM05D004867 ORTHO05D005729 2.0e-89 333.6 397 54.4
Sabra16G0136000 Salix brachista HOM05D004867 ORTHO05D005729 1.2e-86 324.3 392 53.1
Eucgr.I00278 Eucalyptus grandis HOM05D004867 ORTHO05D005729 3.9e-85 319.3 392 50.8
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 6.6e-85 318.5 383 52.2
TWI53G1678 Tripterygium wilfordii HOM05D004867 ORTHO05D005729 1.1e-84 317.8 395 49.9
COL.COLO4_23912 Corchorus olitorius HOM05D001227 ORTHO05D005729 2.1e-83 313.5 387 52.5
TWI73G0181 Tripterygium wilfordii HOM05D004867 ORTHO05D005729 2.1e-83 313.5 393 49.9
Phvul.005G063700 Phaseolus vulgaris HOM05D004867 ORTHO05D005729 1.4e-82 310.8 390 52.1
Nn2g15647 Nelumbo nucifera HOM05D004867 ORTHO05D005729 6.8e-82 308.5 388 50.0
DCAR_029621 Daucus carota HOM05D004867 ORTHO05D005729 1.2e-81 307.8 368 49.7
Lj3g0015556 Lotus japonicus HOM05D004867 ORTHO05D005729 1.2e-81 307.8 389 53.0
Gohir.D08G062800 Gossypium hirsutum HOM05D004867 ORTHO05D005729 1.5e-81 307.4 376 52.1
Rhsim01G0132300 Rhododendron simsii HOM05D004867 ORTHO05D005729 1.5e-81 307.4 381 52.5
VMungo1080G0666 Vigna mungo HOM05D004867 ORTHO05D005729 1.5e-81 307.4 390 51.5
arahy.Tifrunner.gnm1.ann1.8L40SG Arachis hypogaea HOM05D004867 ORTHO05D005729 7.6e-81 305.1 386 52.3
Ca_25995_v3 Cicer arietinum L. HOM05D004867 ORTHO05D005729 1.3e-80 304.3 384 51.8
Sopen01g033570 Solanum pennellii HOM05D004867 ORTHO05D005729 1.3e-80 304.3 385 49.4
Nitab4.5_0000892g0050 Nicotiana tabacum HOM05D004867 ORTHO05D005729 8.4e-80 301.6 384 49.7
PGSC0003DMG402006333 Solanum tuberosum HOM05D004867 ORTHO05D005729 1.9e-79 300.4 384 49.2
Solyc01g074010.4 Solanum lycopersicum HOM05D004867 ORTHO05D005729 3.2e-79 299.7 385 48.8
Oeu013590.1 Olea europaea HOM05D004867 ORTHO05D005729 9.2e-79 298.1 372 50.8
CSS0017046 Camellia sinensis var. sinensis HOM05D004867 ORTHO05D005729 1.6e-78 297.4 384 48.7
Lalb_Chr25g0283491 Lupinus albus HOM05D004867 ORTHO05D005729 1.6e-78 297.4 374 53.5
Psat5g206720 Pisum sativum HOM05D004867 ORTHO05D005729 7.8e-78 295.0 393 51.1
SalBow5G2297 Salvia bowleyana HOM05D004867 ORTHO05D005729 1.7e-77 293.9 368 50.8
Peaxi162Scf00058g00820 Petunia axillaris HOM05D004867 ORTHO05D005729 3.0e-77 293.1 386 48.7
Oeu046529.3 Olea europaea HOM05D004867 ORTHO05D005729 1.1e-76 291.2 380 47.9
Nitab4.5_0003792g0030 Nicotiana tabacum HOM05D004867 ORTHO05D005729 1.5e-76 290.8 384 49.0
CAN.G1393.5 Capsicum annuum HOM05D004867 ORTHO05D005729 1.9e-76 290.4 382 47.1
CAN.G3313.1 Capsicum annuum HOM05D004867 ORTHO05D005729 1.9e-76 290.4 382 47.1
Gohir.A08G053200 Gossypium hirsutum HOM05D004867 ORTHO05D005729 1.9e-76 290.4 344 52.3
Glyma.08G150000 Glycine max HOM05D004867 ORTHO05D005729 4.3e-76 289.3 390 49.7
Gorai.004G065000 Gossypium raimondii HOM05D004867 ORTHO05D005729 4.3e-76 289.3 346 52.3
Cc02_g27130 Coffea canephora HOM05D004867 ORTHO05D005729 2.4e-74 283.5 384 46.9
Duzib133G0042 Durio zibethinus HOM05D004867 ORTHO05D005729 5.2e-74 282.3 380 48.4
PSO384G4425 Papaver somniferum HOM05D004867 ORTHO05D005729 5.2e-74 282.3 377 50.1
Medtr3g026250 Medicago truncatula HOM05D004867 ORTHO05D005729 6.9e-74 282.0 387 50.6
PSO339G0402 Papaver somniferum HOM05D004867 ORTHO05D005729 5.8e-73 278.9 377 49.1
Actinidia21571 Actinidia chinensis HOM05D004867 ORTHO05D005729 7.6e-73 278.5 338 52.1
Peaxi162Scf00081g00024 Petunia axillaris HOM05D004867 ORTHO05D005729 1.3e-72 277.7 374 47.1
Hund24874 Selenicereus undatus HOM05D004867 ORTHO05D005729 1.3e-72 277.7 375 47.2
Lj7A565T27 Lonicera japonica HOM05D004867 ORTHO05D005729 1.9e-71 273.9 381 48.8
ECA234G3341 Erigeron canadensis HOM05D004867 ORTHO05D005729 3.5e-70 269.6 377 47.7
Carub.0004s1428 Capsella rubella HOM05D004867 ORTHO05D005729 3.0e-69 266.5 391 47.8
Migut.B01348 Erythranthe guttata HOM05D004867 ORTHO05D005729 8.7e-69 265.0 372 47.3
ClCG10G012610 Citrullus lanatus HOM05D004867 ORTHO05D005729 1.1e-68 264.6 394 47.7
EL10Ac5g10816 Beta vulgaris HOM05D004867 ORTHO05D005729 2.5e-68 263.5 372 48.4
CsaV3_3G032420 Cucumis sativus L. HOM05D004867 ORTHO05D005729 2.5e-68 263.5 393 47.8
Sp4g15230 Schrenkiella parvula HOM05D004867 ORTHO05D005729 3.3e-68 263.1 386 46.6
Glyma.15G269800 Glycine max HOM05D004867 ORTHO05D005729 9.6e-68 261.5 390 47.2
AUR62031032 Chenopodium quinoa HOM05D004867 ORTHO05D005729 3.6e-67 259.6 369 49.6
AUR62008272 Chenopodium quinoa HOM05D004867 ORTHO05D005729 4.8e-67 259.2 369 48.2
MELO3C023945.2 Cucumis melo HOM05D004867 ORTHO05D005729 1.2e-65 254.6 391 47.6
Aa31LG5G4500 Aethionema arabicum HOM05D004867 ORTHO05D005729 2.0e-65 253.8 384 44.5
THA.LOC104801018 Tarenaya hassleriana HOM05D004867 ORTHO05D005729 2.0e-65 253.8 386 45.3
TPR.G12241 Trifolium pratense HOM05D004867 ORTHO05D005729 5.8e-65 252.3 365 48.8
Aqoxy2G00085 Aquilegia oxysepala HOM05D004867 ORTHO05D005729 9.9e-65 251.5 376 46.5
SGA_v2.0_scaffold5G03115 Striga asiatica HOM05D004867 ORTHO05D005729 1.4e-63 247.7 393 45.3
Sed0025822 Sechium edule HOM05D004867 ORTHO05D005729 1.2e-62 244.6 392 45.7
Sc01g0010400 Simmondsia chinensis HOM05D004867 ORTHO05D005729 1.0e-61 241.5 374 45.7
CARHR126800 Cardamine hirsuta HOM05D004867 ORTHO05D005729 1.1e-60 238.0 388 46.4
BcaB01g03940 Brassica carinata HOM05D004867 ORTHO05D005729 1.3e-59 234.6 378 43.7
Sed0010975 Sechium edule HOM05D004867 ORTHO05D005729 6.2e-59 232.3 385 44.9
AT2G32850 Arabidopsis thaliana HOM05D004867 ORTHO05D005729 2.4e-58 230.3 382 43.2
AL4G28350 Arabidopsis lyrata HOM05D004867 ORTHO05D005729 2.0e-57 227.3 391 44.5
EL10Ac3g04943 Beta vulgaris HOM05D004867 ORTHO05D005729 4.5e-57 226.1 356 43.3
Ah.13g072190 Amaranthus hybridus HOM05D004867 ORTHO05D005729 2.1e-54 217.2 373 42.1
HanXRQChr17g0560591 Helianthus annuus HOM05D004867 ORTHO05D005729 1.0e-53 214.9 366 42.3
SGA_v2.0_scaffold260G45878 Striga asiatica HOM05D004867 ORTHO05D005729 1.0e-53 214.9 383 42.3
BcaC01g05864 Brassica carinata HOM05D004867 ORTHO05D005729 5.1e-53 212.6 366 43.4
Thhalv10016354m.g Eutrema salsugineum HOM05D004867 ORTHO05D005729 5.1e-53 212.6 392 42.1
Dinv43921 Davidia involucrata HOM05D004867 ORTHO05D005729 3.7e-51 206.5 159 70.4
C04p16700 Brassica napus HOM05D004867 ORTHO05D005729 1.2e-49 201.4 375 40.5
Lsat_1_v5_gn_4_46360 Lactuca sativa HOM05D001227 ORTHO05D005729 1.5e-49 201.1 361 43.5
THA.LOC104816028 Tarenaya hassleriana HOM05D004867 ORTHO05D005729 1.0e-48 198.4 399 40.9
C03p21620 Brassica napus HOM05D004867 ORTHO05D005729 1.3e-48 198.0 365 41.1
BolC3t14546H Brassica oleracea HOM05D004867 ORTHO05D005729 1.3e-48 198.0 365 41.1
A03p18560 Brassica napus HOM05D004867 ORTHO05D005729 4.9e-48 196.1 364 41.2
RcHm_v2.0_Chr1g0313561 Rosa chinensis HOM05D004867 ORTHO05D005729 9.3e-47 191.8 101 98.0
BraA03t11115Z Brassica rapa HOM05D004867 ORTHO05D005729 1.3e-45 188.0 364 40.4
ATR0605G176 Amborella trichopoda HOM05D004867 ORTHO05D005729 3.0e-45 186.8 395 36.5
Zm00001eb183460 Zea mays HOM05D004867 ORTHO05D005729 1.8e-42 177.6 364 39.8
unitig_749.g13484 Utricularia gibba HOM05D004867 ORTHO05D005729 1.2e-38 164.9 233 45.9
Actinidia15860 Actinidia chinensis HOM05D004867 ORTHO05D005729 4.3e-36 156.4 203 51.7
Lalb_Chr19g0131991 Lupinus albus HOM05D004867 ORTHO05D005729 6.3e-35 152.5 369 39.6
Zm00001eb094370 Zea mays HOM05D004867 ORTHO05D005729 8.2e-35 152.1 347 39.5
Zm00001eb344610 Zea mays HOM05D004867 ORTHO05D005729 4.1e-34 149.8 245 42.4
Lj9C624G5 Lonicera japonica HOM05D004867 ORTHO05D005729 5.9e-33 146.0 456 32.2
SEGI_25422 Sequoiadendron giganteum HOM05D004867 ORTHO05D005729 2.9e-32 143.7 451 33.3
CDE10G0581 Ceratophyllum demersum HOM05D004867 ORTHO05D005729 5.7e-28 129.4 348 35.6
CDE04G1629 Ceratophyllum demersum HOM05D004867 ORTHO05D005729 1.2e-22 111.7 249 40.2
HPP92_023783 Vanilla planifolia HOM05D004867 ORTHO05D005729 8.0e-22 109.0 370 30.8
CDE07G1317 Ceratophyllum demersum HOM05D004867 ORTHO05D005729 3.9e-21 106.7 239 41.8
QL04p002463 Quercus lobata HOM05D004867 ORTHO05D005729 7.4e-20 102.4 88 59.1
BcaB02g10502 Brassica carinata HOM05D004867 ORTHO05D005729 1.8e-18 97.8 262 37.4
QL04p002518 Quercus lobata HOM05D004867 ORTHO05D005729 1.2e-17 95.1 80 57.5
HanXRQChr01g0018711 Helianthus annuus HOM05D004867 ORTHO05D005729 1.1e-15 88.6 207 33.8
Mapoly0022s0104 Marchantia polymorpha HOM05D004867 ORTHO05D005729 1.1e-15 88.6 467 25.5
QL04p002708 Quercus lobata HOM05D000038 ORTHO05D000143 6.1e-14 82.8 112 45.5
GSVIVG01031991001 Vitis vinifera HOM05D000009 ORTHO05D000008 6.1e-14 82.8 77 55.8
Pp3c8_15370 Physcomitrium patens HOM05D004867 ORTHO05D005729 4.8e-11 73.2 322 28.9
Zm00001eb245770 Zea mays HOM05D004867 ORTHO05D005729 4.8e-11 73.2 194 33.0
SMO147G0308 Selaginella moellendorffii HOM05D004867 ORTHO05D005729 4.5e-09 66.6 134 38.1


User provided reference genes

Program Settings