Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0313421 Rosa chinensis HOM05D006965 ORTHO05D008652 3.8e-207 724.5 351 100.0
FAN01G2144 Fragaria x ananassa HOM05D006965 ORTHO05D008652 4.1e-177 624.8 345 86.7
FvH4_7g00170 Fragaria vesca HOM05D006965 ORTHO05D008652 5.0e-175 617.8 363 83.2
FAN10G4273 Fragaria x ananassa HOM05D006965 ORTHO05D008652 5.2e-164 581.3 363 79.3
FAN06G0111 Fragaria x ananassa HOM05D006965 ORTHO05D008652 9.7e-163 577.0 343 83.1
FAN01G0465 Fragaria x ananassa HOM05D006965 ORTHO05D008652 8.3e-154 547.4 340 79.7
MD02G1318500 Malus domestica HOM05D006965 ORTHO05D008652 2.2e-151 539.3 346 75.7
MD07G1002700 Malus domestica HOM05D006965 ORTHO05D008652 2.2e-151 539.3 360 73.9
QL04p003153 Quercus lobata HOM05D006965 ORTHO05D008652 1.2e-133 480.3 350 67.4
Cfa004805 Carpinus fangiana HOM05D006965 ORTHO05D008652 8.0e-133 477.6 346 66.8
Lj3g0017203 Lotus japonicus HOM05D006965 ORTHO05D008652 2.3e-132 476.1 350 67.1
CiPaw.13G000900 Carya illinoinensis HOM05D006965 ORTHO05D008652 2.0e-131 473.0 351 66.7
QL04p003146 Quercus lobata HOM05D006965 ORTHO05D008652 2.0e-131 473.0 350 67.1
Phvul.005G039600 Phaseolus vulgaris HOM05D006965 ORTHO05D008652 2.6e-131 472.6 342 67.5
QL04p000072 Quercus lobata HOM05D006965 ORTHO05D008652 2.2e-130 469.5 350 66.6
TPR.G11733 Trifolium pratense HOM05D006965 ORTHO05D008652 2.2e-130 469.5 345 66.1
Haze_10398 Corylus avellana HOM05D006965 ORTHO05D008652 1.1e-129 467.2 353 64.9
Sabra09G0014600 Salix brachista HOM05D006965 ORTHO05D008652 5.4e-129 464.9 346 65.6
Ciclev10031978m.g Citrus clementina HOM05D006965 ORTHO05D008652 1.6e-128 463.4 349 63.9
Manes.10G151000 Manihot esculenta HOM05D006965 ORTHO05D008652 2.0e-128 463.0 350 63.7
Lalb_Chr25g0283521 Lupinus albus HOM05D006965 ORTHO05D008652 7.8e-128 461.1 348 64.9
Thecc.01G416200 Theobroma cacao HOM05D006965 ORTHO05D008652 1.0e-127 460.7 352 63.6
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 6.6e-127 458.0 339 65.2
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 6.6e-127 458.0 339 65.2
Glyma.08G149400 Glycine max HOM05D006965 ORTHO05D008652 1.5e-126 456.8 341 66.0
Actinidia32338 Actinidia chinensis HOM05D006965 ORTHO05D008652 1.9e-126 456.4 348 64.7
Medtr2g060820 Medicago truncatula HOM05D006965 ORTHO05D008652 1.9e-126 456.4 324 65.4
Prupe.2G004200 Prunus persica HOM05D006965 ORTHO05D008652 4.3e-126 455.3 277 77.6
Atru.chr11.2694 Acer truncatum HOM05D006965 ORTHO05D008652 7.3e-126 454.5 349 64.2
Psat1g128200 Pisum sativum HOM05D006965 ORTHO05D008652 7.3e-126 454.5 348 63.8
Nitab4.5_0000892g0120 Nicotiana tabacum HOM05D006965 ORTHO05D008652 9.5e-126 454.1 345 63.8
Potri.009G023200 Populus trichocarpa HOM05D006965 ORTHO05D008652 1.2e-125 453.8 346 63.9
Ca_02931_v3 Cicer arietinum L. HOM05D006965 ORTHO05D008652 2.1e-125 453.0 327 66.4
CSS0026631 Camellia sinensis var. sinensis HOM05D006965 ORTHO05D008652 2.8e-125 452.6 345 65.2
FAN03G0167 Fragaria x ananassa HOM05D006965 ORTHO05D008652 4.7e-125 451.8 252 88.1
PGSC0003DMG400006312 Solanum tuberosum HOM05D006965 ORTHO05D008652 6.2e-125 451.4 345 64.3
Nitab4.5_0004592g0020 Nicotiana tabacum HOM05D006965 ORTHO05D008652 8.9e-124 447.6 346 63.0
CAN.G261.10 Capsicum annuum HOM05D006965 ORTHO05D008652 1.2e-123 447.2 345 63.2
Solyc01g073930.3 Solanum lycopersicum HOM05D006965 ORTHO05D008652 1.2e-123 447.2 345 63.8
Sopen01g033500 Solanum pennellii HOM05D006965 ORTHO05D008652 2.0e-123 446.4 345 63.5
CANSAT78G1981 Cannabis sativa HOM05D006965 ORTHO05D008652 5.8e-123 444.9 354 61.6
TAR633G1267 Trochodendron aralioides HOM05D006965 ORTHO05D008652 7.5e-123 444.5 345 64.6
GSVIVG01001368001 Vitis vinifera HOM05D006965 ORTHO05D008652 7.5e-123 444.5 319 67.4
Cc02_g27080 Coffea canephora HOM05D006965 ORTHO05D008652 3.7e-122 442.2 346 63.3
ClCG10G012640 Citrullus lanatus HOM05D006965 ORTHO05D008652 8.3e-122 441.0 356 61.2
CsaV3_3G032450 Cucumis sativus L. HOM05D006965 ORTHO05D008652 1.1e-121 440.7 346 61.6
Nn2g15664 Nelumbo nucifera HOM05D006965 ORTHO05D008652 4.1e-121 438.7 346 62.7
Gohir.A08G026760 Gossypium hirsutum HOM05D006965 ORTHO05D008652 1.6e-120 436.8 351 61.3
VMungo1080G1640 Vigna mungo HOM05D006965 ORTHO05D008652 3.5e-120 435.6 323 65.6
THA.LOC104827577 Tarenaya hassleriana HOM05D006965 ORTHO05D008652 4.6e-120 435.3 354 61.0
vmacro13617 Vaccinium macrocarpon HOM05D006965 ORTHO05D008652 1.3e-119 433.7 345 61.4
Gohir.D08G037500 Gossypium hirsutum HOM05D006965 ORTHO05D008652 1.7e-119 433.3 351 60.7
Gorai.004G035500 Gossypium raimondii HOM05D006965 ORTHO05D008652 8.6e-119 431.0 351 60.7
Sc12g0002350 Simmondsia chinensis HOM05D006965 ORTHO05D008652 7.3e-118 427.9 345 60.6
MSTRG.17063 Avicennia marina HOM05D006965 ORTHO05D008652 1.2e-117 427.2 352 60.8
TWI73G0408 Tripterygium wilfordii HOM05D006965 ORTHO05D008652 6.8e-116 421.4 345 61.7
PSO339G5860 Papaver somniferum HOM05D006965 ORTHO05D008652 1.2e-115 420.6 345 59.4
PSO384G4145 Papaver somniferum HOM05D006965 ORTHO05D008652 5.8e-115 418.3 345 59.4
Rhsim07G0050600 Rhododendron simsii HOM05D006965 ORTHO05D008652 2.4e-113 412.9 327 59.9
Sed0016917 Sechium edule HOM05D006965 ORTHO05D008652 2.4e-113 412.9 346 59.0
MELO3C023943.2 Cucumis melo HOM05D006965 ORTHO05D008652 3.2e-113 412.5 346 58.7
Aa31LG1G25970 Aethionema arabicum HOM05D006965 ORTHO05D008652 1.3e-111 407.1 365 55.1
AL4G43420 Arabidopsis lyrata HOM05D006965 ORTHO05D008652 2.5e-110 402.9 353 56.7
Thhalv10001527m.g Eutrema salsugineum HOM05D006965 ORTHO05D008652 2.5e-110 402.9 348 56.6
BcaB02g08813 Brassica carinata HOM05D006965 ORTHO05D008652 9.6e-110 401.0 345 57.1
Migut.B01364 Erythranthe guttata HOM05D006965 ORTHO05D008652 1.2e-109 400.6 345 59.4
MBI04_g33895_MAGBIO Magnolia biondii HOM05D006965 ORTHO05D008652 1.6e-109 400.2 345 58.0
TAR362G1148 Trochodendron aralioides HOM05D006965 ORTHO05D008652 1.6e-109 400.2 314 65.3
AUR62012162 Chenopodium quinoa HOM05D006965 ORTHO05D008652 2.1e-109 399.8 341 59.5
ECA248G1794 Erigeron canadensis HOM05D006965 ORTHO05D008652 1.1e-108 397.5 347 58.2
Sp4g26490 Schrenkiella parvula HOM05D006965 ORTHO05D008652 2.4e-108 396.4 348 56.0
C04p05300 Brassica napus HOM05D006965 ORTHO05D008652 8.9e-108 394.4 347 54.8
BcaC02g12316 Brassica carinata HOM05D006965 ORTHO05D008652 2.6e-107 392.9 346 54.6
BraA05t19431Z Brassica rapa HOM05D006965 ORTHO05D008652 5.8e-107 391.7 347 55.3
A05p04570 Brassica napus HOM05D006965 ORTHO05D008652 3.8e-106 389.0 346 54.9
Hund16040 Selenicereus undatus HOM05D006965 ORTHO05D008652 6.4e-106 388.3 339 56.9
PGR004G0492 Punica granatum HOM05D006965 ORTHO05D008652 1.9e-105 386.7 316 62.0
Eucgr.G02572 Eucalyptus grandis HOM05D006965 ORTHO05D008652 4.2e-105 385.6 350 54.6
AT2G44420 Arabidopsis thaliana HOM05D006965 ORTHO05D008652 1.2e-104 384.0 379 52.0
Aqoxy1G00028 Aquilegia oxysepala HOM05D006965 ORTHO05D008652 1.6e-104 383.6 347 56.2
Carub.0004s2700 Capsella rubella HOM05D006965 ORTHO05D008652 2.7e-104 382.9 347 55.0
SalBow5G3371 Salvia bowleyana HOM05D006965 ORTHO05D008652 1.7e-103 380.2 330 57.3
BolC4t22170H Brassica oleracea HOM05D006965 ORTHO05D008652 3.0e-103 379.4 370 51.1
AUR62022798 Chenopodium quinoa HOM05D006965 ORTHO05D008652 3.0e-103 379.4 344 57.3
Dinv43490 Davidia involucrata HOM05D006965 ORTHO05D008652 4.8e-101 372.1 271 69.0
SGA_v2.0_scaffold5G03114 Striga asiatica HOM05D006965 ORTHO05D008652 5.8e-99 365.2 344 54.4
HanXRQChr01g0018681 Helianthus annuus HOM05D006965 ORTHO05D008652 4.6e-96 355.5 341 55.7
ATR0605G047 Amborella trichopoda HOM05D006965 ORTHO05D008652 3.0e-95 352.8 345 51.9
Zm00001eb275720 Zea mays HOM05D006965 ORTHO05D008652 1.5e-94 350.5 329 52.9
Os06g0618150 Oryza sativa ssp. japonica HOM05D006965 ORTHO05D008652 1.4e-92 344.0 328 52.4
EL10Ac2g04673 Beta vulgaris HOM05D006965 ORTHO05D008652 5.8e-91 338.6 313 56.9
Ah.16g102760 Amaranthus hybridus HOM05D006965 ORTHO05D008652 1.7e-90 337.0 344 53.8
Hma1.2p1_2998F.1_g331493 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 1.4e-89 334.0 264 64.8
Hma1.2p1_2998F.1_g331496 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 6.0e-88 328.6 252 66.3
Lsat_1_v5_gn_1_110081 Lactuca sativa HOM05D006965 ORTHO05D008652 4.3e-86 322.4 305 56.7
unitig_26.g9594 Utricularia gibba HOM05D001227 ORTHO05D001082 5.6e-86 322.0 349 50.1
Duzib114G0529 Durio zibethinus HOM05D006965 ORTHO05D008652 4.8e-85 318.9 353 49.3
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 1.8e-84 317.0 240 62.9
CDE05G0249 Ceratophyllum demersum HOM05D006965 ORTHO05D008652 8.2e-77 291.6 253 56.5
Peaxi162Scf00878g00321 Petunia axillaris HOM05D006965 ORTHO05D008652 4.5e-75 285.8 262 56.5
Cfa022003 Carpinus fangiana HOM05D006965 ORTHO05D008652 7.9e-72 275.0 251 56.6
arahy.Tifrunner.gnm1.ann1.Z1UMC7 Arachis hypogaea HOM05D006965 ORTHO05D008652 1.9e-70 270.4 214 64.0
HPP92_002651 Vanilla planifolia HOM05D006965 ORTHO05D008652 3.3e-70 269.6 241 53.5
arahy.Tifrunner.gnm1.ann1.ZJD8NP Arachis hypogaea HOM05D006965 ORTHO05D008652 1.4e-65 254.2 243 56.4
CARHR139580 Cardamine hirsuta HOM05D006965 ORTHO05D008652 2.0e-62 243.8 185 60.5
Mapoly0087s0073 Marchantia polymorpha HOM05D006965 ORTHO05D008652 2.5e-62 243.4 353 40.2
DCAR_029603 Daucus carota HOM05D006965 ORTHO05D008652 1.3e-58 231.1 313 45.7
Eucgr.L03457 Eucalyptus grandis HOM05D006965 ORTHO05D008652 1.3e-42 177.9 133 60.2
SEGI_12556 Sequoiadendron giganteum HOM05D006965 ORTHO05D008652 8.8e-39 165.2 130 60.0
Haze_10414 Corylus avellana HOM05D006965 ORTHO05D008652 5.0e-34 149.4 100 71.0
SMO147G0191 Selaginella moellendorffii HOM05D020017 ORTHO05D022314 3.0e-31 140.2 218 38.1
SMO132G0001 Selaginella moellendorffii HOM05D006965 ORTHO05D008652 2.0e-30 137.5 311 34.4
Oeu009369.1 Olea europaea HOM05D006965 ORTHO05D008652 4.2e-25 119.8 146 44.5
Cpa.g.sc189.20 Carica papaya HOM05D006965 ORTHO05D008652 7.8e-19 99.0 69 59.4
TPR.G14363 Trifolium pratense HOM05D006965 ORTHO05D008652 1.0e-15 88.6 69 62.3
CBR_g34612 Chara braunii HOM05D006965 ORTHO05D008652 4.0e-15 86.7 106 41.5
Cpa.g.sc189.19 Carica papaya HOM05D006965 ORTHO05D008652 2.3e-10 70.9 82 51.2


User provided reference genes

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