Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0313291 Rosa chinensis HOM05D007302 ORTHO05D009191 3.0e-61 238.4 127 100.0
FAN03G0504 Fragaria x ananassa HOM05D007302 ORTHO05D009191 2.1e-54 215.7 131 89.3
Prupe.2G003100 Prunus persica HOM05D007302 ORTHO05D009191 1.7e-53 212.6 131 87.8
MD07G1001600 Malus domestica HOM05D007302 ORTHO05D009191 1.6e-51 206.1 131 86.3
CANSAT11G0176 Cannabis sativa HOM05D007302 ORTHO05D009191 2.0e-49 199.1 116 90.5
FvH4_7g00100 Fragaria vesca HOM05D007302 ORTHO05D009191 5.8e-49 197.6 109 96.3
TAR369G0332 Trochodendron aralioides HOM05D007302 ORTHO05D009191 5.4e-47 191.0 128 78.9
TAR369G0850 Trochodendron aralioides HOM05D007302 ORTHO05D009191 7.1e-47 190.7 128 78.9
Thecc.01G416400 Theobroma cacao HOM05D007302 ORTHO05D009191 9.3e-47 190.3 121 86.8
Lj6g0025867 Lotus japonicus HOM05D007302 ORTHO05D009191 3.5e-46 188.3 116 84.5
Manes.10G151800 Manihot esculenta HOM05D007302 ORTHO05D009191 4.6e-46 188.0 117 88.0
Medtr2g061420 Medicago truncatula HOM05D007302 ORTHO05D009191 4.6e-46 188.0 116 87.1
Glyma.15G268700 Glycine max HOM05D007302 ORTHO05D009191 7.8e-46 187.2 120 80.8
Lj3g0023486 Lotus japonicus HOM05D007302 ORTHO05D009191 1.0e-45 186.8 116 83.6
QL04p001433 Quercus lobata HOM05D007302 ORTHO05D009191 1.0e-45 186.8 115 86.1
TPR.G16161 Trifolium pratense HOM05D007302 ORTHO05D009191 1.0e-45 186.8 121 83.5
Aa31LG1G25940 Aethionema arabicum HOM05D007302 ORTHO05D009191 3.0e-45 185.3 116 84.5
Cpa.g.sc189.6 Carica papaya HOM05D007302 ORTHO05D009191 3.0e-45 185.3 116 84.5
FAN06G3306 Fragaria x ananassa HOM05D007302 ORTHO05D009191 3.0e-45 185.3 119 86.6
Psat1g127480 Pisum sativum HOM05D007302 ORTHO05D009191 3.0e-45 185.3 116 85.3
Ca_02882_v3 Cicer arietinum L. HOM05D007302 ORTHO05D009191 3.9e-45 184.9 116 84.5
TWI09G1618 Tripterygium wilfordii HOM05D007302 ORTHO05D009191 3.9e-45 184.9 114 86.0
Ciclev10033063m.g Citrus clementina HOM05D007302 ORTHO05D009191 5.1e-45 184.5 116 84.5
Eucgr.G03411 Eucalyptus grandis HOM05D007302 ORTHO05D009191 5.1e-45 184.5 121 81.0
Gohir.D08G037201 Gossypium hirsutum HOM05D007302 ORTHO05D009191 5.1e-45 184.5 116 87.1
Gorai.004G035200 Gossypium raimondii HOM05D007302 ORTHO05D009191 5.1e-45 184.5 116 87.1
Phvul.005G041100 Phaseolus vulgaris HOM05D007302 ORTHO05D009191 5.1e-45 184.5 119 80.7
vmacro13612 Vaccinium macrocarpon HOM05D007302 ORTHO05D009191 5.1e-45 184.5 134 77.6
Actinidia05847 Actinidia chinensis HOM05D007302 ORTHO05D009191 6.6e-45 184.1 136 77.9
Sed0011752 Sechium edule HOM05D007302 ORTHO05D009191 6.6e-45 184.1 130 77.7
AT2G44360 Arabidopsis thaliana HOM05D007302 ORTHO05D009191 1.5e-44 183.0 113 85.8
FAN10G3108 Fragaria x ananassa HOM05D007302 ORTHO05D009191 1.5e-44 183.0 119 85.7
Potri.001G230100 Populus trichocarpa HOM05D007302 ORTHO05D009191 1.5e-44 183.0 128 78.9
Thhalv10001676m.g Eutrema salsugineum HOM05D007302 ORTHO05D009191 1.9e-44 182.6 113 85.8
MBI08_g23101_MAGBIO Magnolia biondii HOM05D007302 ORTHO05D009191 2.5e-44 182.2 129 76.7
THA.LOC104817151 Tarenaya hassleriana HOM05D007302 ORTHO05D009191 2.5e-44 182.2 110 86.4
Atru.chr11.2701 Acer truncatum HOM05D007302 ORTHO05D009191 4.3e-44 181.4 128 80.5
VMungo1080G0568 Vigna mungo HOM05D007302 ORTHO05D009191 5.6e-44 181.0 115 81.7
GSVIVG01001360001 Vitis vinifera HOM05D007302 ORTHO05D009191 5.6e-44 181.0 115 84.3
CsaV3_7G031460 Cucumis sativus L. HOM05D007302 ORTHO05D009191 7.3e-44 180.6 116 82.8
DCAR_015712 Daucus carota HOM05D007302 ORTHO05D009191 7.3e-44 180.6 120 83.3
Lalb_Chr25g0283591 Lupinus albus HOM05D007302 ORTHO05D009191 7.3e-44 180.6 114 83.3
Cfa010688 Carpinus fangiana HOM05D007302 ORTHO05D009191 1.3e-43 179.9 115 83.5
Carub.0004s2694 Capsella rubella HOM05D007302 ORTHO05D009191 1.6e-43 179.5 113 84.1
Haze_03286 Corylus avellana HOM05D007302 ORTHO05D009191 2.1e-43 179.1 128 77.3
Gohir.A08G026680 Gossypium hirsutum HOM05D007302 ORTHO05D009191 2.1e-43 179.1 116 84.5
Sp4g26420 Schrenkiella parvula HOM05D007302 ORTHO05D009191 2.1e-43 179.1 113 84.1
CARHR139520 Cardamine hirsuta HOM05D007302 ORTHO05D009191 2.8e-43 178.7 113 84.1
Rhsim07G0050000 Rhododendron simsii HOM05D007302 ORTHO05D009191 4.8e-43 177.9 133 76.7
arahy.Tifrunner.gnm1.ann1.5U19IL Arachis hypogaea HOM05D007302 ORTHO05D009191 8.1e-43 177.2 119 79.0
arahy.Tifrunner.gnm1.ann1.Z7X15P Arachis hypogaea HOM05D007302 ORTHO05D009191 8.1e-43 177.2 119 79.0
Duzib268G0295 Durio zibethinus HOM05D007302 ORTHO05D009191 1.8e-42 176.0 116 84.5
Actinidia31711 Actinidia chinensis HOM05D007302 ORTHO05D009191 3.1e-42 175.3 109 85.3
Nn2g15684 Nelumbo nucifera HOM05D007302 ORTHO05D009191 3.1e-42 175.3 115 80.9
AL4G43340 Arabidopsis lyrata HOM05D007302 ORTHO05D009191 4.0e-42 174.9 113 82.3
A04p33280 Brassica napus HOM05D007302 ORTHO05D009191 5.3e-42 174.5 113 81.4
BraA04t18789Z Brassica rapa HOM05D007302 ORTHO05D009191 5.3e-42 174.5 113 81.4
BcaB06g29370 Brassica carinata HOM05D007302 ORTHO05D009191 6.9e-42 174.1 113 81.4
C04p70980 Brassica napus HOM05D007302 ORTHO05D009191 6.9e-42 174.1 113 81.4
BolC4t28601H Brassica oleracea HOM05D007302 ORTHO05D009191 6.9e-42 174.1 113 81.4
QL04p001298 Quercus lobata HOM05D007302 ORTHO05D009191 1.2e-41 173.3 139 71.2
ClCG09G003750 Citrullus lanatus HOM05D007302 ORTHO05D009191 2.6e-41 172.2 119 79.0
MELO3C023508.2 Cucumis melo HOM05D007302 ORTHO05D009191 2.6e-41 172.2 157 65.6
CiPaw.16G067000 Carya illinoinensis HOM05D007302 ORTHO05D009191 5.8e-41 171.0 111 82.0
Lsat_1_v5_gn_1_87261 Lactuca sativa HOM05D007302 ORTHO05D009191 1.3e-40 169.9 121 77.7
ECA248G3756 Erigeron canadensis HOM05D007302 ORTHO05D009191 1.4e-39 166.4 122 76.2
PSO384G4593 Papaver somniferum HOM05D007302 ORTHO05D009191 1.9e-39 166.0 124 71.8
PSO339G0269 Papaver somniferum HOM05D007302 ORTHO05D009191 4.2e-39 164.9 124 71.8
SalBow4G1665 Salvia bowleyana HOM05D007302 ORTHO05D009191 4.2e-39 164.9 122 73.8
SalBow4G2255 Salvia bowleyana HOM05D007302 ORTHO05D009191 4.2e-39 164.9 122 73.8
Sopen10g014540 Solanum pennellii HOM05D007302 ORTHO05D009191 7.1e-39 164.1 123 73.2
MSTRG.28098 Avicennia marina HOM05D007302 ORTHO05D009191 1.2e-38 163.3 120 74.2
Sabra16G0137900 Salix brachista HOM05D007302 ORTHO05D009191 1.6e-38 162.9 164 60.4
Migut.N01659 Erythranthe guttata HOM05D007302 ORTHO05D009191 2.1e-38 162.5 122 70.5
Migut.O00474 Erythranthe guttata HOM05D007302 ORTHO05D009191 2.1e-38 162.5 122 70.5
CSS0001542 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 2.7e-38 162.2 110 81.8
CSS0004707 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 2.7e-38 162.2 110 81.8
PGSC0003DMG400028766 Solanum tuberosum HOM05D007302 ORTHO05D009191 4.6e-38 161.4 120 73.3
Aqoxy1G00038 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 1.3e-37 159.8 122 72.1
Solyc10g045350.2 Solanum lycopersicum HOM05D007302 ORTHO05D009191 1.3e-37 159.8 123 72.4
Actinidia25680 Actinidia chinensis HOM05D007302 ORTHO05D009191 3.9e-37 158.3 96 86.5
Sc11g0006270 Simmondsia chinensis HOM05D007302 ORTHO05D009191 5.1e-37 157.9 124 66.9
Cc02_g26960 Coffea canephora HOM05D007302 ORTHO05D009191 6.7e-37 157.5 120 74.2
Peaxi162Scf00245g01315 Petunia axillaris HOM05D007302 ORTHO05D009191 3.3e-36 155.2 123 69.9
HanXRQChr15g0480631 Helianthus annuus HOM05D007302 ORTHO05D009191 1.3e-35 153.3 113 75.2
Nn7g36009 Nelumbo nucifera HOM05D007302 ORTHO05D009191 1.3e-35 153.3 116 70.7
unitig_736.g22290 Utricularia gibba HOM05D007302 ORTHO05D009191 4.8e-35 151.4 110 70.9
CDE07G1496 Ceratophyllum demersum HOM05D007302 ORTHO05D009191 3.4e-33 145.2 114 64.0
ATR0807G228 Amborella trichopoda HOM05D007302 ORTHO05D009191 1.4e-31 139.8 102 71.6
SGA_v2.0_scaffold95G28773 Striga asiatica HOM05D007302 ORTHO05D009191 4.2e-31 138.3 122 65.6
EL10Ac9g21938 Beta vulgaris HOM05D007302 ORTHO05D009191 7.1e-31 137.5 109 70.6
Dinv43937 Davidia involucrata HOM05D007302 ORTHO05D009191 1.2e-30 136.7 131 64.9
Hund06578 Selenicereus undatus HOM05D007302 ORTHO05D009191 2.7e-30 135.6 122 60.7
COL.COLO4_25061 Corchorus olitorius HOM05D007302 ORTHO05D009191 1.3e-29 133.3 115 71.3
SEGI_27997 Sequoiadendron giganteum HOM05D007302 ORTHO05D009191 4.3e-28 128.3 109 63.3
CSS0017005 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 7.4e-28 127.5 111 67.6
HPP92_022445 Vanilla planifolia HOM05D007302 ORTHO05D009191 3.7e-27 125.2 88 76.1
AUR62011558 Chenopodium quinoa HOM05D007302 ORTHO05D009191 4.0e-26 121.7 112 61.6
AUR62016377 Chenopodium quinoa HOM05D007302 ORTHO05D009191 2.6e-25 119.0 96 68.8
CSS0014571 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 1.5e-20 103.2 108 58.3
DCAR_024994 Daucus carota HOM05D007302 ORTHO05D009191 3.7e-19 98.6 94 62.8
Oeu003126.2 Olea europaea HOM05D007302 ORTHO05D009191 3.7e-19 98.6 70 75.7
Pp3c17_19080 Physcomitrium patens HOM05D007302 ORTHO05D009191 6.9e-18 94.4 109 46.8
Os09g0553800 Oryza sativa ssp. japonica HOM05D007302 ORTHO05D009191 2.0e-17 92.8 63 76.2
Mapoly0007s0266 Marchantia polymorpha HOM05D007302 ORTHO05D009191 5.9e-17 91.3 116 44.8
CBR_g22319 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-15 86.7 119 40.3
MD05G1005700 Malus domestica HOM05D007302 ORTHO05D009191 7.2e-15 84.3 51 88.2
MD15G1336100 Malus domestica HOM05D007302 ORTHO05D009191 5.3e-10 68.2 55 69.1
BcaB01g03316 Brassica carinata HOM05D007302 ORTHO05D009191 8.5e-08 60.8 50 66.0


User provided reference genes

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