Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c39g0503321 Rosa chinensis HOM05D000053 ORTHO05D000448 5.6e-46 187.2 90 100.0
RcHm_v2.0_Chr1g0353121 Rosa chinensis HOM05D000053 ORTHO05D000448 2.7e-24 115.2 79 74.7
RcHm_v2.0_Chr1g0353341 Rosa chinensis HOM05D000053 ORTHO05D000448 1.4e-20 102.8 73 74.0
FvH4_7g13570 Fragaria vesca HOM05D000053 ORTHO05D000448 3.4e-19 98.2 71 71.8
FAN06G5035 Fragaria x ananassa HOM05D000053 ORTHO05D000448 3.4e-19 98.2 71 71.8
MD12G1153100 Malus domestica HOM05D000053 ORTHO05D000448 9.9e-19 96.7 88 60.2
FAN09G2462 Fragaria x ananassa HOM05D000053 ORTHO05D000448 8.4e-18 93.6 82 62.2
FAN02G3661 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.9e-17 92.4 85 58.8
MD05G1095300 Malus domestica HOM05D000053 ORTHO05D000448 4.2e-17 91.3 82 58.5
RcHm_v2.0_Chr1g0353291 Rosa chinensis HOM05D000053 ORTHO05D000448 9.2e-17 90.1 128 46.9
FAN13G2068 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.1e-14 83.2 82 53.7
RcHm_v2.0_Chr6g0257231 Rosa chinensis HOM05D000053 ORTHO05D000448 1.9e-14 82.4 71 62.0
FvH4_6g11080 Fragaria vesca HOM05D000053 ORTHO05D000448 7.3e-14 80.5 75 58.7
RcHm_v2.0_Chr1g0351861 Rosa chinensis HOM05D000053 ORTHO05D000448 7.3e-14 80.5 82 57.3
RcHm_v2.0_Chr3g0461931 Rosa chinensis HOM05D000053 ORTHO05D000448 7.3e-14 80.5 71 60.6
FAN09G0845 Fragaria x ananassa HOM05D000053 ORTHO05D000448 2.1e-13 79.0 85 54.1
RcHm_v2.0_Chr0c39g0503201 Rosa chinensis HOM05D000053 ORTHO05D000448 3.6e-13 78.2 84 56.0
RcHm_v2.0_Chr1g0353251 Rosa chinensis HOM05D000053 ORTHO05D000448 3.6e-13 78.2 84 56.0
RcHm_v2.0_Chr3g0462001 Rosa chinensis HOM05D000053 ORTHO05D000448 4.7e-13 77.8 71 62.0
FAN06G3822 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.4e-12 76.3 69 59.4
QL07p034964 Quercus lobata HOM05D000053 ORTHO05D000448 1.8e-12 75.9 85 51.8
Haze_21039 Corylus avellana HOM05D000053 ORTHO05D000448 6.9e-12 73.9 70 58.6
Haze_24196 Corylus avellana HOM05D000053 ORTHO05D000448 6.9e-12 73.9 71 54.9
QL11p003761 Quercus lobata HOM05D000053 ORTHO05D000448 6.9e-12 73.9 69 60.9
FAN05G5435 Fragaria x ananassa HOM05D000053 ORTHO05D000448 9.0e-12 73.6 82 51.2
QL07p034975 Quercus lobata HOM05D000053 ORTHO05D000448 9.0e-12 73.6 69 58.0
FAN14G4507 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.5e-11 72.8 75 54.7
RcHm_v2.0_Chr1g0353361 Rosa chinensis HOM05D000053 ORTHO05D000448 2.0e-11 72.4 74 56.8
QL07p034530 Quercus lobata HOM05D000053 ORTHO05D000448 2.6e-11 72.0 75 50.7
CiPaw.08G110600 Carya illinoinensis HOM05D000053 ORTHO05D000448 3.4e-11 71.6 64 57.8
Cfa017122 Carpinus fangiana HOM05D000053 ORTHO05D000448 5.8e-11 70.9 76 51.3
Haze_16211 Corylus avellana HOM05D000053 ORTHO05D000448 5.8e-11 70.9 73 56.2
Haze_21036 Corylus avellana HOM05D000053 ORTHO05D000448 5.8e-11 70.9 73 54.8
Haze_21037 Corylus avellana HOM05D000053 ORTHO05D000448 7.6e-11 70.5 73 54.8
Sed0015886 Sechium edule HOM05D000053 ORTHO05D000448 1.3e-10 69.7 77 50.6
QL07p034487 Quercus lobata HOM05D000053 ORTHO05D000448 2.2e-10 68.9 77 50.6
Cfa017123 Carpinus fangiana HOM05D000053 ORTHO05D000448 2.9e-10 68.6 73 53.4
AUR62002217 Chenopodium quinoa HOM05D000053 ORTHO05D000448 2.9e-10 68.6 74 50.0
Eucgr.A00539 Eucalyptus grandis HOM05D000053 ORTHO05D000448 3.8e-10 68.2 81 46.9
Cfa011535 Carpinus fangiana HOM05D000053 ORTHO05D000448 6.4e-10 67.4 106 42.5
Cfa017168 Carpinus fangiana HOM05D000053 ORTHO05D000448 6.4e-10 67.4 73 53.4
Eucgr.A00575 Eucalyptus grandis HOM05D000053 ORTHO05D000448 8.4e-10 67.0 80 43.8
FAN05G1065 Fragaria x ananassa HOM05D000053 ORTHO05D000448 8.4e-10 67.0 58 55.2
QL11p003782 Quercus lobata HOM05D000053 ORTHO05D000448 8.4e-10 67.0 69 56.5
GSVIVG01030335001 Vitis vinifera HOM05D000053 ORTHO05D000448 8.4e-10 67.0 73 50.7
CiPaw.14G095100 Carya illinoinensis HOM05D000053 ORTHO05D000448 1.4e-09 66.2 74 50.0
PGR031G1664 Punica granatum HOM05D000053 ORTHO05D000448 1.4e-09 66.2 70 52.9
Ah.02g120640 Amaranthus hybridus HOM05D000053 ORTHO05D000448 5.4e-09 64.3 73 49.3
CiPaw.10G158500 Carya illinoinensis HOM05D000053 ORTHO05D000448 5.4e-09 64.3 69 53.6
Haze_24140 Corylus avellana HOM05D000053 ORTHO05D000448 5.4e-09 64.3 74 50.0
FAN14G1501 Fragaria x ananassa HOM05D000053 ORTHO05D000448 5.4e-09 64.3 58 55.2
Haze_21082 Corylus avellana HOM05D000053 ORTHO05D000448 7.1e-09 63.9 70 51.4
FAN09G1247 Fragaria x ananassa HOM05D000053 ORTHO05D000448 7.1e-09 63.9 75 49.3
FAN09G1384 Fragaria x ananassa HOM05D000053 ORTHO05D000448 7.1e-09 63.9 57 59.6
Eucgr.A00583 Eucalyptus grandis HOM05D000053 ORTHO05D000448 9.3e-09 63.5 58 55.2
FvH4_6g11081 Fragaria vesca HOM05D000053 ORTHO05D000448 9.3e-09 63.5 58 55.2
FAN05G2316 Fragaria x ananassa HOM05D000053 ORTHO05D000448 9.3e-09 63.5 75 49.3
FAN05G4486 Fragaria x ananassa HOM05D000053 ORTHO05D000448 9.3e-09 63.5 75 49.3
FAN09G1861 Fragaria x ananassa HOM05D000053 ORTHO05D000448 9.3e-09 63.5 79 51.9
QL10p041485 Quercus lobata HOM05D000053 ORTHO05D000448 9.3e-09 63.5 69 47.8
ClCG00G006090 Citrullus lanatus HOM05D000053 ORTHO05D000448 1.2e-08 63.2 69 49.3
Dinv18518 Davidia involucrata HOM05D000053 ORTHO05D000448 1.2e-08 63.2 80 47.5
FAN05G0509 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.2e-08 63.2 58 55.2
RcHm_v2.0_Chr3g0461851 Rosa chinensis HOM05D000053 ORTHO05D000448 1.2e-08 63.2 55 61.8
ClCG10G022360 Citrullus lanatus HOM05D000053 ORTHO05D000448 1.6e-08 62.8 61 52.5
Ciclev10011057m.g Citrus clementina HOM05D000053 ORTHO05D000448 1.6e-08 62.8 75 44.0
Duzib093G1302 Durio zibethinus HOM05D000053 ORTHO05D000448 1.6e-08 62.8 69 47.8
Eucgr.A00590 Eucalyptus grandis HOM05D000053 ORTHO05D000448 1.6e-08 62.8 69 53.6
MD12G1174100 Malus domestica HOM05D000053 ORTHO05D000448 1.6e-08 62.8 55 63.6
Cfa017167 Carpinus fangiana HOM05D000053 ORTHO05D000448 4.6e-08 61.2 57 57.9
Cfa017169 Carpinus fangiana HOM05D000053 ORTHO05D000448 4.6e-08 61.2 57 57.9
Ciclev10027022m.g Citrus clementina HOM05D000053 ORTHO05D000448 6.0e-08 60.8 69 46.4
Eucgr.A00698 Eucalyptus grandis HOM05D000053 ORTHO05D000448 7.8e-08 60.5 68 50.0
Nn2g14549 Nelumbo nucifera HOM05D000053 ORTHO05D000448 7.8e-08 60.5 65 49.2
arahy.Tifrunner.gnm1.ann1.58KXNL Arachis hypogaea HOM05D000053 ORTHO05D000448 1.0e-07 60.1 76 40.8
Phvul.008G095200 Phaseolus vulgaris HOM05D000053 ORTHO05D000448 1.0e-07 60.1 87 42.5
QL07p034536 Quercus lobata HOM05D000053 ORTHO05D000448 1.3e-07 59.7 57 52.6
TWI74G0825 Tripterygium wilfordii HOM05D000053 ORTHO05D000448 1.3e-07 59.7 56 48.2
MD12G1174400 Malus domestica HOM05D000053 ORTHO05D000448 1.7e-07 59.3 74 47.3
Ah.13g066860 Amaranthus hybridus HOM05D000053 ORTHO05D000448 2.3e-07 58.9 57 50.9
Haze_21868 Corylus avellana HOM05D000053 ORTHO05D000448 2.3e-07 58.9 65 47.7
Migut.J00127 Erythranthe guttata HOM05D000053 ORTHO05D000448 2.3e-07 58.9 72 47.2
SGA_v2.0_scaffold85G26712 Striga asiatica HOM05D000053 ORTHO05D008490 3.0e-07 58.5 69 49.3
COL.COLO4_14497 Corchorus olitorius HOM05D000053 ORTHO05D000448 3.9e-07 58.2 57 49.1
QL10p041191 Quercus lobata HOM05D000053 ORTHO05D000448 3.9e-07 58.2 69 49.3
CiPaw.09G211900 Carya illinoinensis HOM05D000053 ORTHO05D000448 5.1e-07 57.8 57 57.9
Potri.016G120532 Populus trichocarpa HOM05D000053 ORTHO05D000448 5.1e-07 57.8 105 35.2
Ah.07g207690 Amaranthus hybridus HOM05D000053 ORTHO05D000448 6.6e-07 57.4 55 52.7
Ciclev10027416m.g Citrus clementina HOM05D000053 ORTHO05D000448 6.6e-07 57.4 67 44.8
Haze_21053 Corylus avellana HOM05D000053 ORTHO05D000448 6.6e-07 57.4 55 60.0
Eucgr.A00706 Eucalyptus grandis HOM05D000053 ORTHO05D000448 6.6e-07 57.4 76 46.1
Phvul.008G096900 Phaseolus vulgaris HOM05D000053 ORTHO05D000448 6.6e-07 57.4 62 45.2
Prupe.6G281400 Prunus persica HOM05D000053 ORTHO05D000448 6.6e-07 57.4 75 45.3
AUR62015483 Chenopodium quinoa HOM05D000053 ORTHO05D000448 8.7e-07 57.0 55 52.7
Haze_05756 Corylus avellana HOM05D000053 ORTHO05D000448 8.7e-07 57.0 57 52.6
Eucgr.A00700 Eucalyptus grandis HOM05D000053 ORTHO05D000448 8.7e-07 57.0 76 44.7
FAN09G0495 Fragaria x ananassa HOM05D000053 ORTHO05D000448 8.7e-07 57.0 71 45.1
PSO017G3677 Papaver somniferum HOM05D000053 ORTHO05D000448 8.7e-07 57.0 85 40.0
Peaxi162Scf00434g00337 Petunia axillaris HOM05D000053 ORTHO05D000448 8.7e-07 57.0 68 44.1
Ciclev10024804m.g Citrus clementina HOM05D000053 ORTHO05D000448 1.1e-06 56.6 67 44.8
Gohir.D01G218000 Gossypium hirsutum HOM05D000053 ORTHO05D000448 1.1e-06 56.6 57 45.6
Gorai.002G264500 Gossypium raimondii HOM05D000053 ORTHO05D000448 1.1e-06 56.6 57 45.6
MBI17_g13486_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 1.1e-06 56.6 73 42.5
TAR636G2098 Trochodendron aralioides HOM05D000053 ORTHO05D000448 1.1e-06 56.6 65 46.2
CiPaw.10G158600 Carya illinoinensis HOM05D000053 ORTHO05D000448 1.5e-06 56.2 69 49.3
PGR031G0757 Punica granatum HOM05D000053 ORTHO05D000448 1.5e-06 56.2 57 52.6
Cfa011645 Carpinus fangiana HOM05D000053 ORTHO05D000448 1.9e-06 55.8 57 49.1
Duzib106G0191 Durio zibethinus HOM05D000053 ORTHO05D000448 1.9e-06 55.8 57 47.4
Eucgr.A00592 Eucalyptus grandis HOM05D000053 ORTHO05D000448 1.9e-06 55.8 57 54.4
CAN.G41.2 Capsicum annuum HOM05D000053 ORTHO05D000448 2.5e-06 55.5 78 37.2
Haze_21080 Corylus avellana HOM05D000053 ORTHO05D000448 2.5e-06 55.5 57 50.9
Ah.04g155670 Amaranthus hybridus HOM05D000053 ORTHO05D000448 3.3e-06 55.1 74 43.2
AagrBONN_evm.TU.Sc2ySwM_368.2864 Anthoceros agrestis HOM05D000094 ORTHO05D000455 3.3e-06 55.1 67 47.8
FAN05G5581 Fragaria x ananassa HOM05D000053 ORTHO05D000448 3.3e-06 55.1 71 45.1
Cfa011579 Carpinus fangiana HOM05D000053 ORTHO05D000448 4.3e-06 54.7 69 46.4
CsaV3_3G033510 Cucumis sativus L. HOM05D000053 ORTHO05D000448 4.3e-06 54.7 67 43.3
CsaV3_3G033520 Cucumis sativus L. HOM05D000053 ORTHO05D000448 4.3e-06 54.7 67 43.3
Gohir.A01G228200 Gossypium hirsutum HOM05D000053 ORTHO05D000448 4.3e-06 54.7 56 44.6
Gohir.D01G218100 Gossypium hirsutum HOM05D000053 ORTHO05D000448 4.3e-06 54.7 57 45.6
Gorai.002G264700 Gossypium raimondii HOM05D000053 ORTHO05D000448 4.3e-06 54.7 57 45.6
MD12G1175000 Malus domestica HOM05D000053 ORTHO05D000448 4.3e-06 54.7 75 42.7
QL10p041208 Quercus lobata HOM05D000053 ORTHO05D000448 4.3e-06 54.7 69 44.9
Gohir.A04G093900 Gossypium hirsutum HOM05D000053 ORTHO05D000448 5.6e-06 54.3 68 47.1
QL07p034997 Quercus lobata HOM05D000053 ORTHO05D000448 5.6e-06 54.3 57 50.9
RcHm_v2.0_Chr3g0462441 Rosa chinensis HOM05D000053 ORTHO05D000448 5.6e-06 54.3 76 46.1
RcHm_v2.0_Chr3g0462511 Rosa chinensis HOM05D000053 ORTHO05D000448 5.6e-06 54.3 76 46.1
arahy.Tifrunner.gnm1.ann1.BXF2YD Arachis hypogaea HOM05D000071 ORTHO05D000029 7.3e-06 53.9 73 38.4
CiPaw.08G110800 Carya illinoinensis HOM05D000053 ORTHO05D000448 7.3e-06 53.9 78 42.3
Medtr4g017730 Medicago truncatula HOM05D000053 ORTHO05D000448 7.3e-06 53.9 71 46.5
Prupe.6G281200 Prunus persica HOM05D000053 ORTHO05D000448 7.3e-06 53.9 79 40.5
SEGI_36696 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 7.3e-06 53.9 77 40.3
TWI38G1191 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 7.3e-06 53.9 79 43.0
COL.COLO4_38379 Corchorus olitorius HOM05D000053 ORTHO05D000035 9.6e-06 53.5 82 41.5
Haze_20654 Corylus avellana HOM05D000053 ORTHO05D000448 9.6e-06 53.5 57 50.9
Prupe.8G054300 Prunus persica HOM05D000053 ORTHO05D000448 9.6e-06 53.5 55 47.3


User provided reference genes

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