Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-28 129.0 61 100.0
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-28 129.0 61 100.0
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-27 125.2 60 96.7
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-27 125.2 60 96.7
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 6.7e-27 123.2 60 93.3
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.7e-27 122.9 60 93.3
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.7e-27 122.9 60 93.3
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.7e-27 122.9 60 93.3
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 5.7e-26 120.2 60 93.3
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.4e-26 119.8 60 91.7
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.3e-25 116.7 60 91.7
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 6.1e-20 100.1 60 76.7
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 3.0e-19 97.8 60 71.7
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 5.7e-18 93.6 60 70.0
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 2.2e-17 91.7 61 72.1
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 4.8e-17 90.5 60 68.3
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.1e-16 89.4 59 67.8
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.8e-16 88.6 64 68.8
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 2.4e-16 88.2 57 70.2
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 4.1e-16 87.4 60 65.0
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 6.9e-16 86.7 62 67.7
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 1.5e-15 85.5 60 68.3
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 5.9e-15 83.6 60 68.3
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 5.9e-15 83.6 60 68.3
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 7.7e-15 83.2 62 62.9
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.3e-14 82.4 66 62.1
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.3e-14 82.4 66 62.1
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.3e-14 82.4 61 63.9
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.7e-14 82.0 60 66.7
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.7e-14 82.0 61 63.9
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.7e-14 82.0 60 68.3
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.9e-14 81.3 61 63.9
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 5.0e-14 80.5 61 67.2
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 5.0e-14 80.5 60 71.7
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 5.0e-14 80.5 61 62.3
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 6.5e-14 80.1 60 70.0
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 6.5e-14 80.1 62 61.3
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 6.5e-14 80.1 62 61.3
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 8.5e-14 79.7 60 66.7
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.4e-13 79.0 64 60.9
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 2.5e-13 78.2 62 61.3
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 2.5e-13 78.2 60 66.7
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 3.2e-13 77.8 61 62.3
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.2e-13 77.8 58 67.2
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 3.2e-13 77.8 58 65.5
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 4.2e-13 77.4 60 65.0
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 5.5e-13 77.0 61 65.6
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 7.2e-13 76.6 62 62.9
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 7.2e-13 76.6 60 63.3
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 9.4e-13 76.3 60 63.3
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.2e-12 75.9 68 51.5
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 1.6e-12 75.5 60 60.0
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 2.1e-12 75.1 60 58.3
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 2.7e-12 74.7 68 50.0
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 2.7e-12 74.7 60 60.0
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 2.7e-12 74.7 60 65.0
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.6e-12 73.9 60 58.3
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 4.6e-12 73.9 61 59.0
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 4.6e-12 73.9 58 62.1
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 6.1e-12 73.6 57 59.6
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 6.1e-12 73.6 59 52.5
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 6.1e-12 73.6 60 55.0
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 7.9e-12 73.2 60 58.3
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.4e-11 72.4 69 55.1
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.4e-11 72.4 61 54.1
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 1.4e-11 72.4 65 53.8
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 1.8e-11 72.0 60 65.0
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 3.0e-11 71.2 61 54.1
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 3.0e-11 71.2 62 61.3
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 3.9e-11 70.9 60 56.7
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 5.1e-11 70.5 57 54.4
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 5.1e-11 70.5 57 54.4
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 6.7e-11 70.1 60 56.7
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 1.1e-10 69.3 60 56.7
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.5e-10 68.9 60 55.0
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 2.0e-10 68.6 60 56.7
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 2.6e-10 68.2 60 63.3
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 2.6e-10 68.2 60 53.3
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 2.6e-10 68.2 64 53.1
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 3.3e-10 67.8 60 56.7
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 4.4e-10 67.4 58 56.9
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 4.4e-10 67.4 60 55.0
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 7.4e-10 66.6 52 59.6
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 7.4e-10 66.6 60 60.0
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 7.4e-10 66.6 58 55.2
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 9.7e-10 66.2 58 55.2
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 9.7e-10 66.2 61 57.4
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 9.7e-10 66.2 61 54.1
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.3e-09 65.9 60 58.3
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 2.2e-09 65.1 60 55.0
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 2.2e-09 65.1 60 51.7
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.7e-09 64.3 61 54.1
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 6.3e-09 63.5 65 49.2
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 8.2e-09 63.2 58 53.4
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 1.4e-08 62.4 56 55.4
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.4e-08 62.4 58 53.4
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 1.4e-08 62.4 58 53.4
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 4.1e-08 60.8 52 57.7
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 5.3e-08 60.5 57 49.1
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 9.1e-08 59.7 60 50.0
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.2e-07 59.3 58 53.4
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 1.5e-07 58.9 58 58.6
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 2.6e-07 58.2 60 48.3
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.0e-06 56.2 58 44.8


User provided reference genes

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