Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c28g0500971 Rosa chinensis HOM05D005055 ORTHO05D006327 1.1e-86 323.2 159 100.0
RcHm_v2.0_Chr7g0243571 Rosa chinensis HOM05D005055 ORTHO05D006327 1.1e-86 323.2 159 100.0
RcHm_v2.0_Chr0c28g0501011 Rosa chinensis HOM05D005055 ORTHO05D006327 1.3e-85 319.7 158 99.4
RcHm_v2.0_Chr7g0243611 Rosa chinensis HOM05D005055 ORTHO05D006327 1.3e-85 319.7 158 99.4
RcHm_v2.0_Chr0c28g0501061 Rosa chinensis HOM05D005055 ORTHO05D006327 3.7e-85 318.2 159 98.7
RcHm_v2.0_Chr3g0490501 Rosa chinensis HOM05D005055 ORTHO05D006327 1.4e-84 316.2 158 97.5
RcHm_v2.0_Chr1g0325431 Rosa chinensis HOM05D005055 ORTHO05D006327 9.1e-84 313.5 158 96.8
RcHm_v2.0_Chr5g0031481 Rosa chinensis HOM05D005055 ORTHO05D006327 1.6e-80 302.8 158 94.3
RcHm_v2.0_Chr7g0217341 Rosa chinensis HOM05D005055 ORTHO05D006327 8.8e-79 297.0 158 92.4
FvH4_3g18660 Fragaria vesca HOM05D005055 ORTHO05D006327 5.3e-76 287.7 158 88.6
FAN25G1310 Fragaria x ananassa HOM05D005055 ORTHO05D006327 5.3e-76 287.7 158 88.6
FAN21G0251 Fragaria x ananassa HOM05D005055 ORTHO05D006327 1.3e-74 283.1 158 87.3
MD11G1259500 Malus domestica HOM05D005055 ORTHO05D006327 8.3e-69 263.8 158 81.0
Prupe.4G170400 Prunus persica HOM05D005055 ORTHO05D006327 7.0e-68 260.8 158 79.1
CiPaw.11G163000 Carya illinoinensis HOM05D005055 ORTHO05D006327 7.2e-65 250.8 158 75.3
CANSAT35G0899 Cannabis sativa HOM05D005055 ORTHO05D006327 5.2e-63 244.6 158 75.3
RcHm_v2.0_Chr5g0052511 Rosa chinensis HOM05D005055 ORTHO05D006327 8.8e-63 243.8 163 79.1
QL08p026888 Quercus lobata HOM05D005055 ORTHO05D006327 1.1e-60 236.9 157 73.2
Manes.15G092000 Manihot esculenta HOM05D005055 ORTHO05D006327 7.0e-60 234.2 158 72.2
Lalb_Chr25g0285991 Lupinus albus HOM05D005055 ORTHO05D006327 1.6e-59 233.0 161 68.3
Phvul.005G067800 Phaseolus vulgaris HOM05D005055 ORTHO05D006327 1.6e-59 233.0 158 70.3
Thecc.07G105000 Theobroma cacao HOM05D005055 ORTHO05D006327 2.0e-59 232.6 159 71.7
VMungo1080G1419 Vigna mungo HOM05D005055 ORTHO05D006327 3.5e-59 231.9 161 69.6
Haze_09351 Corylus avellana HOM05D005055 ORTHO05D006327 7.7e-59 230.7 174 65.5
Duzib213G0103 Durio zibethinus HOM05D005055 ORTHO05D006327 1.0e-58 230.3 159 69.2
Sabra16G0248000 Salix brachista HOM05D005055 ORTHO05D006327 1.7e-58 229.6 159 69.8
arahy.Tifrunner.gnm1.ann1.254HEG Arachis hypogaea HOM05D005055 ORTHO05D006327 2.3e-58 229.2 157 72.0
PGR083G1414 Punica granatum HOM05D005055 ORTHO05D006327 2.3e-58 229.2 158 69.0
Actinidia12556 Actinidia chinensis HOM05D005055 ORTHO05D006327 2.9e-58 228.8 159 72.3
arahy.Tifrunner.gnm1.ann1.1K9JH7 Arachis hypogaea HOM05D005055 ORTHO05D006327 2.9e-58 228.8 157 72.0
Glyma.13G271500 Glycine max HOM05D005055 ORTHO05D006327 2.9e-58 228.8 161 68.9
Sed0010915 Sechium edule HOM05D005055 ORTHO05D006327 2.9e-58 228.8 160 70.0
Eucgr.F01210 Eucalyptus grandis HOM05D005055 ORTHO05D006327 5.0e-58 228.0 154 69.5
GSVIVG01014230001 Vitis vinifera HOM05D005055 ORTHO05D006327 8.6e-58 227.3 158 72.8
Gohir.D05G344500 Gossypium hirsutum HOM05D005055 ORTHO05D006327 1.5e-57 226.5 159 69.8
Lj1A833T50 Lonicera japonica HOM05D005055 ORTHO05D006327 1.9e-57 226.1 158 70.3
Rhsim06G0205400 Rhododendron simsii HOM05D005055 ORTHO05D006327 1.9e-57 226.1 154 71.4
Gohir.A04G038500 Gossypium hirsutum HOM05D005055 ORTHO05D006327 2.5e-57 225.7 159 69.2
Atru.chr2.2244 Acer truncatum HOM05D005055 ORTHO05D006327 4.2e-57 224.9 157 70.1
ClCG07G009980 Citrullus lanatus HOM05D005055 ORTHO05D006327 4.2e-57 224.9 160 66.9
Nn1g04357 Nelumbo nucifera HOM05D005055 ORTHO05D006327 7.2e-57 224.2 158 70.3
Oeu025338.1 Olea europaea HOM05D005055 ORTHO05D006327 9.5e-57 223.8 158 67.7
TAR629G2461 Trochodendron aralioides HOM05D005055 ORTHO05D006327 9.5e-57 223.8 153 71.2
Medtr2g078120 Medicago truncatula HOM05D005055 ORTHO05D006327 1.2e-56 223.4 161 66.5
Gorai.009G372500 Gossypium raimondii HOM05D005055 ORTHO05D006327 4.7e-56 221.5 159 67.9
Cc05_g11380 Coffea canephora HOM05D005055 ORTHO05D006327 6.1e-56 221.1 158 68.4
Potri.001G376600 Populus trichocarpa HOM05D005055 ORTHO05D006327 1.8e-55 219.5 159 70.4
Sc16g0007450 Simmondsia chinensis HOM05D005055 ORTHO05D006327 2.3e-55 219.2 159 66.7
TPR.G9221 Trifolium pratense HOM05D005055 ORTHO05D006327 2.3e-55 219.2 162 65.4
Sopen12g005980 Solanum pennellii HOM05D005055 ORTHO05D006327 3.0e-55 218.8 158 65.2
PGSC0003DMG400015380 Solanum tuberosum HOM05D005055 ORTHO05D006327 3.0e-55 218.8 158 65.2
Lj3g0015470 Lotus japonicus HOM05D005055 ORTHO05D006327 4.0e-55 218.4 160 66.2
CAN.G292.8 Capsicum annuum HOM05D005055 ORTHO05D006327 1.2e-54 216.9 153 66.0
Nitab4.5_0000035g0040 Nicotiana tabacum HOM05D005055 ORTHO05D006327 5.7e-54 214.5 158 67.1
Solyc12g014190.2 Solanum lycopersicum HOM05D005055 ORTHO05D006327 5.7e-54 214.5 158 63.9
Cpa.g.sc131.64 Carica papaya HOM05D005055 ORTHO05D006327 1.3e-53 213.4 159 67.9
SalBow8G2403 Salvia bowleyana HOM05D005055 ORTHO05D006327 1.3e-53 213.4 158 65.2
Ciclev10008222m.g Citrus clementina HOM05D005055 ORTHO05D006327 4.9e-53 211.5 153 66.0
MSTRG.6806 Avicennia marina HOM05D005055 ORTHO05D006327 2.4e-52 209.1 158 64.6
CsaV3_4G008350 Cucumis sativus L. HOM05D005055 ORTHO05D006327 4.1e-52 208.4 165 64.2
Nitab4.5_0005440g0050 Nicotiana tabacum HOM05D005055 ORTHO05D006327 5.4e-52 208.0 188 56.9
THA.LOC104799653 Tarenaya hassleriana HOM05D005055 ORTHO05D006327 2.0e-51 206.1 159 64.2
Psat5g239800 Pisum sativum HOM05D005055 ORTHO05D006327 1.3e-50 203.4 149 65.8
Hund02369 Selenicereus undatus HOM05D005055 ORTHO05D006327 1.7e-50 203.0 157 62.4
Aqoxy4G00472 Aquilegia oxysepala HOM05D005055 ORTHO05D006327 2.9e-50 202.2 152 65.1
DCAR_013144 Daucus carota HOM05D005055 ORTHO05D006327 3.9e-50 201.8 158 64.6
MD03G1240200 Malus domestica HOM05D005055 ORTHO05D006327 3.9e-50 201.8 159 66.7
HanXRQChr13g0389111 Helianthus annuus HOM05D005055 ORTHO05D006327 5.0e-50 201.4 158 65.8
MBI06_g18006_MAGBIO Magnolia biondii HOM05D005055 ORTHO05D006327 1.1e-49 200.3 157 67.5
ATR0602G274 Amborella trichopoda HOM05D005055 ORTHO05D006327 4.3e-49 198.4 156 64.1
ECA240G2410 Erigeron canadensis HOM05D005055 ORTHO05D006327 5.6e-49 198.0 159 63.5
CDE10G0422 Ceratophyllum demersum HOM05D005055 ORTHO05D006327 7.3e-49 197.6 157 62.4
SGA_v2.0_scaffold73G24201 Striga asiatica HOM05D005055 ORTHO05D006327 4.7e-48 194.9 157 61.1
Aa31sc170G10 Aethionema arabicum HOM05D005055 ORTHO05D006327 6.2e-48 194.5 159 59.7
Sp6g24360 Schrenkiella parvula HOM05D005055 ORTHO05D006327 6.2e-48 194.5 161 61.5
Ah.06g185120 Amaranthus hybridus HOM05D005055 ORTHO05D006327 1.8e-47 193.0 157 61.1
A03p09780 Brassica napus HOM05D005055 ORTHO05D006327 4.0e-47 191.8 158 59.5
Dinv14969 Davidia involucrata HOM05D005055 ORTHO05D006327 4.0e-47 191.8 113 79.6
C03p11360 Brassica napus HOM05D005055 ORTHO05D006327 6.8e-47 191.0 158 60.1
AL6G31580 Arabidopsis lyrata HOM05D005055 ORTHO05D006327 1.2e-46 190.3 161 58.4
BcaC03g13727 Brassica carinata HOM05D005055 ORTHO05D006327 1.2e-46 190.3 160 59.4
BolC2t07004H Brassica oleracea HOM05D005055 ORTHO05D006327 1.2e-46 190.3 160 59.4
PSO782G0219 Papaver somniferum HOM05D005055 ORTHO05D006327 1.2e-46 190.3 129 68.2
BcaB01g04815 Brassica carinata HOM05D005055 ORTHO05D006327 2.6e-46 189.1 158 58.9
BcaB05g22884 Brassica carinata HOM05D005055 ORTHO05D006327 7.5e-46 187.6 162 59.3
A02p05980 Brassica napus HOM05D005055 ORTHO05D006327 7.5e-46 187.6 160 58.1
BNapus_Darmor_BZH_scaffold_38p01860 Brassica napus HOM05D005055 ORTHO05D006327 7.5e-46 187.6 160 58.1
BraA02t05550Z Brassica rapa HOM05D005055 ORTHO05D006327 7.5e-46 187.6 160 58.1
AUR62036100 Chenopodium quinoa HOM05D005055 ORTHO05D006327 9.8e-46 187.2 158 57.0
PSO063G4771 Papaver somniferum HOM05D005055 ORTHO05D006327 9.8e-46 187.2 129 66.7
Thhalv10013462m.g Eutrema salsugineum HOM05D005055 ORTHO05D006327 1.3e-45 186.8 161 59.6
BraA03t10293Z Brassica rapa HOM05D005055 ORTHO05D006327 1.7e-45 186.4 161 59.0
AT5G20040 Arabidopsis thaliana HOM05D005055 ORTHO05D006327 2.2e-45 186.0 159 57.9
Carub.0006s1841 Capsella rubella HOM05D005055 ORTHO05D006327 2.2e-45 186.0 159 57.2
CARHR192800 Cardamine hirsuta HOM05D005055 ORTHO05D006327 2.9e-45 185.7 159 56.6
AUR62019538 Chenopodium quinoa HOM05D005055 ORTHO05D006327 3.7e-45 185.3 153 58.8
BolC3t13609H Brassica oleracea HOM05D005055 ORTHO05D006327 2.7e-43 179.1 161 56.5
unitig_86.g29833 Utricularia gibba HOM05D005055 ORTHO05D006327 3.0e-42 175.6 154 55.2
vmacro11912 Vaccinium macrocarpon HOM05D005055 ORTHO05D006327 5.0e-42 174.9 110 74.5
unitig_85.g27415 Utricularia gibba HOM05D005055 ORTHO05D006327 6.6e-42 174.5 155 54.2
HPP92_012839 Vanilla planifolia HOM05D005055 ORTHO05D006327 3.6e-40 168.7 124 63.7
Aqoxy3G02852 Aquilegia oxysepala HOM05D005055 ORTHO05D006327 5.2e-39 164.9 103 72.8
Ca_04006_v3 Cicer arietinum L. HOM05D005055 ORTHO05D006327 2.6e-38 162.5 158 52.5
CSS0050211 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D001408 3.5e-35 152.1 159 53.5
Peaxi162Scf01503g00020 Petunia axillaris HOM05D005055 ORTHO05D006327 7.8e-35 151.0 115 64.3
Migut.M00745 Erythranthe guttata HOM05D005055 ORTHO05D006327 1.0e-34 150.6 158 50.6
COL.COLO4_17607 Corchorus olitorius HOM05D000878 ORTHO05D006327 2.3e-34 149.4 111 68.5
Cfa019592 Carpinus fangiana HOM05D005055 ORTHO05D006327 3.3e-33 145.6 95 72.6
MELO3C016098.2 Cucumis melo HOM05D005055 ORTHO05D006327 2.8e-32 142.5 125 60.8
AagrBONN_evm.TU.Sc2ySwM_362.390 Anthoceros agrestis HOM05D005055 ORTHO05D006327 4.0e-31 138.7 114 55.3
Mapoly0033s0012 Marchantia polymorpha HOM05D005055 ORTHO05D006327 5.2e-31 138.3 159 49.1
Zm00001eb271810 Zea mays HOM05D005055 ORTHO05D006327 5.2e-31 138.3 148 48.0
SMO116G0058 Selaginella moellendorffii HOM05D005055 ORTHO05D006327 6.4e-29 131.3 156 45.5
Pp3c3_37040 Physcomitrium patens HOM05D005055 ORTHO05D006327 3.9e-26 122.1 116 53.4
AagrBONN_evm.TU.Sc2ySwM_368.2293 Anthoceros agrestis HOM05D005055 ORTHO05D006327 1.4e-23 113.6 128 44.5
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 2.6e-22 109.4 131 42.0
MCO11G386 Micromonas commoda HOM05D005055 ORTHO05D006327 4.2e-20 102.1 119 44.5
SEGI_11854 Sequoiadendron giganteum HOM05D005055 ORTHO05D006327 4.2e-20 102.1 116 44.0
SEGI_34325 Sequoiadendron giganteum HOM05D005055 ORTHO05D006327 4.2e-20 102.1 116 44.0
Mapoly0012s0089 Marchantia polymorpha HOM05D005055 ORTHO05D006327 1.7e-18 96.7 119 42.0
Pp3c5_9400 Physcomitrium patens HOM05D005055 ORTHO05D006327 2.3e-18 96.3 121 41.3
RcHm_v2.0_Chr6g0273141 Rosa chinensis HOM05D005055 ORTHO05D006327 5.6e-17 91.7 50 92.0
PRCOL_00003063 Prasinoderma coloniale HOM05D005055 ORTHO05D006327 1.6e-16 90.1 125 40.8
Pp3c27_70 Physcomitrium patens HOM05D005055 ORTHO05D006327 4.8e-16 88.6 136 36.0
AagrBONN_evm.TU.Sc2ySwM_362.2160 Anthoceros agrestis HOM05D005055 ORTHO05D006327 1.1e-15 87.4 156 34.6
Pp3c16_6080 Physcomitrium patens HOM05D005055 ORTHO05D006327 2.4e-15 86.3 102 43.1
FAN16G0072 Fragaria x ananassa HOM05D005055 ORTHO05D006327 4.4e-14 82.0 42 85.7
Pp3c6_21360 Physcomitrium patens HOM05D005055 ORTHO05D006327 5.8e-14 81.6 135 36.3
Lsat_1_v5_gn_9_99580 Lactuca sativa HOM05D005055 ORTHO05D006327 9.9e-14 80.9 124 41.1
EL10Ac4g08316 Beta vulgaris HOM05D005055 ORTHO05D006327 1.7e-13 80.1 79 49.4
Lsat_1_v5_gn_2_6620 Lactuca sativa HOM05D005055 ORTHO05D006327 1.4e-12 77.0 61 62.3
Peaxi162Scf01503g00021 Petunia axillaris HOM05D005055 ORTHO05D006327 7.9e-11 71.2 39 79.5
Dinv06233 Davidia involucrata HOM05D005055 ORTHO05D006327 6.6e-10 68.2 48 64.6
Cre17.g717350 Chlamydomonas reinhardtii HOM05D005055 ORTHO05D006327 2.4e-07 59.7 56 44.6


User provided reference genes

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