Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c20g0500251 Rosa chinensis HOM05D007737 ORTHO05D009754 3.4e-91 338.2 157 100.0
FvH4_7g08430 Fragaria vesca HOM05D007737 ORTHO05D009754 3.1e-68 261.9 157 77.7
FAN03G2224 Fragaria x ananassa HOM05D007737 ORTHO05D009754 1.1e-60 236.9 143 76.9
FAN10G0020 Fragaria x ananassa HOM05D007737 ORTHO05D009754 2.5e-49 199.1 122 76.2
Solyc06g051160.4 Solanum lycopersicum HOM05D007737 ORTHO05D009754 7.2e-49 197.6 122 69.7
PGSC0003DMG400015652 Solanum tuberosum HOM05D007737 ORTHO05D009754 1.0e-47 193.7 122 68.9
Dinv43570 Davidia involucrata HOM05D007737 ORTHO05D009754 3.0e-47 192.2 138 64.5
Manes.12G126400 Manihot esculenta HOM05D007737 ORTHO05D009754 3.0e-47 192.2 125 66.4
Hma1.2p1_0601F.1_g187210 Hydrangea macrophylla HOM05D007737 ORTHO05D009754 6.7e-47 191.0 131 68.7
MD02G1228500 Malus domestica HOM05D007737 ORTHO05D009754 8.8e-47 190.7 157 58.0
Oeu029042.1 Olea europaea HOM05D007737 ORTHO05D009754 4.4e-46 188.3 141 61.0
CANSAT35G0994 Cannabis sativa HOM05D007737 ORTHO05D009754 1.7e-45 186.4 153 57.5
MSTRG.4970 Avicennia marina HOM05D007737 ORTHO05D009754 4.8e-45 184.9 124 64.5
Gohir.A05G333700 Gossypium hirsutum HOM05D007737 ORTHO05D009754 1.1e-44 183.7 153 54.2
Lsat_1_v5_gn_7_11721 Lactuca sativa HOM05D007737 ORTHO05D009754 1.1e-44 183.7 156 58.3
arahy.Tifrunner.gnm1.ann1.J0MG2W Arachis hypogaea HOM05D007737 ORTHO05D009754 3.1e-44 182.2 134 63.4
Gohir.D04G072800 Gossypium hirsutum HOM05D007737 ORTHO05D009754 3.1e-44 182.2 135 59.3
Gorai.012G081800 Gossypium raimondii HOM05D007737 ORTHO05D009754 6.9e-44 181.0 135 58.5
HanXRQChr06g0168511 Helianthus annuus HOM05D007737 ORTHO05D009754 6.9e-44 181.0 123 63.4
TAR375G1083 Trochodendron aralioides HOM05D007737 ORTHO05D009754 2.0e-43 179.5 135 61.5
Sabra14G0139900 Salix brachista HOM05D007737 ORTHO05D009754 3.4e-43 178.7 102 73.5
CiPaw.13G019700 Carya illinoinensis HOM05D007737 ORTHO05D009754 5.9e-43 177.9 155 57.4
Cc02_g25850 Coffea canephora HOM05D007737 ORTHO05D009754 1.7e-42 176.4 155 55.5
Psat0s4349g0040 Pisum sativum HOM05D007737 ORTHO05D009754 5.0e-42 174.9 133 60.9
Psat0s2829g0120 Pisum sativum HOM05D007737 ORTHO05D009754 6.5e-42 174.5 133 60.9
QL04p025132 Quercus lobata HOM05D007737 ORTHO05D009754 1.1e-41 173.7 160 56.9
Nitab4.5_0011440g0030 Nicotiana tabacum HOM05D007737 ORTHO05D009754 1.9e-41 172.9 123 61.8
Migut.N01704 Erythranthe guttata HOM05D007737 ORTHO05D009754 2.1e-40 169.5 104 67.3
COL.COLO4_19346 Corchorus olitorius HOM05D007737 ORTHO05D009754 3.6e-40 168.7 155 52.3
LjContig00564g0006359 Lotus japonicus HOM05D007737 ORTHO05D009754 3.6e-40 168.7 132 58.3
Lalb_Chr17g0347681 Lupinus albus HOM05D007737 ORTHO05D009754 7.9e-40 167.5 137 57.7
Duzib128G0131 Durio zibethinus HOM05D007737 ORTHO05D009754 3.0e-39 165.6 154 52.6
Thecc.10G000900 Theobroma cacao HOM05D007737 ORTHO05D009754 3.0e-39 165.6 153 50.3
Actinidia30967 Actinidia chinensis HOM05D007737 ORTHO05D009754 3.9e-39 165.2 127 59.8
PGR119G2515 Punica granatum HOM05D007737 ORTHO05D009754 3.9e-39 165.2 126 61.1
Actinidia05801 Actinidia chinensis HOM05D007737 ORTHO05D009754 8.8e-39 164.1 121 62.0
Glyma.02G276300 Glycine max HOM05D007737 ORTHO05D009754 8.8e-39 164.1 132 57.6
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.5e-38 163.3 138 53.6
CSS0024286 Camellia sinensis var. sinensis HOM05D007737 ORTHO05D009754 1.5e-38 163.3 139 58.3
DCAR_029388 Daucus carota HOM05D007737 ORTHO05D009754 4.4e-38 161.8 137 51.8
SalBow4G2387 Salvia bowleyana HOM05D007737 ORTHO05D009754 5.7e-38 161.4 168 47.6
Sed0019089 Sechium edule HOM05D007737 ORTHO05D009754 5.7e-38 161.4 132 55.3
arahy.Tifrunner.gnm1.ann1.BW18VB Arachis hypogaea HOM05D007737 ORTHO05D009754 9.7e-38 160.6 134 56.0
arahy.Tifrunner.gnm1.ann1.HH45UC Arachis hypogaea HOM05D007737 ORTHO05D009754 2.8e-37 159.1 134 54.5
CsaV3_6G006540 Cucumis sativus L. HOM05D007737 ORTHO05D009754 1.8e-36 156.4 137 53.3
Sc02g0003320 Simmondsia chinensis HOM05D007737 ORTHO05D009754 1.8e-36 156.4 133 55.6
Psat0s4932g0040 Pisum sativum HOM05D007737 ORTHO05D009754 3.1e-36 155.6 133 55.6
TWI14G0846 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 4.1e-36 155.2 126 57.9
ECA236G0282 Erigeron canadensis HOM05D007737 ORTHO05D009754 2.6e-35 152.5 142 52.1
Phvul.008G205200 Phaseolus vulgaris HOM05D007737 ORTHO05D009754 2.2e-34 149.4 132 54.5
TWI23G0770 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 2.2e-34 149.4 110 61.8
FAN06G2876 Fragaria x ananassa HOM05D007737 ORTHO05D009754 8.5e-34 147.5 80 83.8
Ciclev10022762m.g Citrus clementina HOM05D007737 ORTHO05D009754 2.1e-32 142.9 134 52.2
CAN.G1183.16 Capsicum annuum HOM05D007737 ORTHO05D009754 2.7e-32 142.5 129 50.4
SGA_v2.0_scaffold77G25232 Striga asiatica HOM05D007737 ORTHO05D009754 3.6e-32 142.1 177 45.2
Eucgr.D01138 Eucalyptus grandis HOM05D007737 ORTHO05D009754 1.0e-31 140.6 160 45.0
Prupe.2G111200 Prunus persica HOM05D007737 ORTHO05D009754 2.3e-31 139.4 118 53.4
Potri.014G179800 Populus trichocarpa HOM05D007737 ORTHO05D009754 1.3e-29 133.7 102 56.9
GSVIVG01018401001 Vitis vinifera HOM05D007737 ORTHO05D009754 6.3e-29 131.3 155 44.5
Atru.chr5.19 Acer truncatum HOM05D007737 ORTHO05D009754 9.1e-28 127.5 101 56.4
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 2.0e-27 126.3 105 53.3
AUR62023349 Chenopodium quinoa HOM05D007737 ORTHO05D009754 2.0e-27 126.3 158 42.4
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.0e-26 124.0 93 62.4
Sopen06g017020 Solanum pennellii HOM05D007737 ORTHO05D009754 8.5e-26 120.9 89 59.6
AagrBONN_evm.TU.Sc2ySwM_344.418 Anthoceros agrestis HOM05D007737 ORTHO05D009754 1.9e-25 119.8 101 49.5
Os04g0589200 Oryza sativa ssp. japonica HOM05D007737 ORTHO05D009754 5.5e-25 118.2 121 45.5
AUR62013808 Chenopodium quinoa HOM05D007737 ORTHO05D009754 1.2e-24 117.1 121 44.6
PSO210G3425 Papaver somniferum HOM05D007737 ORTHO05D009754 3.0e-23 112.5 119 46.2
PSO210G3843 Papaver somniferum HOM05D007737 ORTHO05D009754 5.2e-23 111.7 115 47.0
THA.LOC104806480 Tarenaya hassleriana HOM05D007737 ORTHO05D009754 1.2e-22 110.5 130 42.3
Mapoly0099s0043 Marchantia polymorpha HOM05D007737 ORTHO05D009754 2.0e-22 109.8 104 47.1
ClCG06G000750 Citrullus lanatus HOM05D007737 ORTHO05D009754 2.8e-21 105.9 69 66.7
Carub.0003s1738 Capsella rubella HOM05D007737 ORTHO05D009754 8.3e-21 104.4 120 42.5
HPP92_007265 Vanilla planifolia HOM05D007737 ORTHO05D009754 8.3e-21 104.4 107 44.9
BraA01t03730Z Brassica rapa HOM05D007737 ORTHO05D009754 2.4e-20 102.8 125 40.0
Nitab4.5_0000507g0110 Nicotiana tabacum HOM05D007737 ORTHO05D009754 7.0e-20 101.3 89 49.4
unitig_22.g5837 Utricularia gibba HOM05D007737 ORTHO05D009754 1.6e-19 100.1 82 50.0
CARHR093000 Cardamine hirsuta HOM05D007737 ORTHO05D009754 1.3e-18 97.1 103 41.7
AL3G30770 Arabidopsis lyrata HOM05D007737 ORTHO05D009754 2.3e-18 96.3 133 37.6
MELO3C022466.2 Cucumis melo HOM05D007737 ORTHO05D009754 2.3e-18 96.3 137 40.9
Sp3g15800 Schrenkiella parvula HOM05D007737 ORTHO05D009754 3.8e-18 95.5 122 38.5
Thhalv10021734m.g Eutrema salsugineum HOM05D007737 ORTHO05D009754 5.0e-18 95.1 128 37.5
vmacro13551 Vaccinium macrocarpon HOM05D007737 ORTHO05D009754 6.5e-18 94.7 167 37.7
BcaC09g48726 Brassica carinata HOM05D001802 ORTHO05D001788 4.2e-17 92.0 107 39.3
Pp3c17_5190 Physcomitrium patens HOM05D007737 ORTHO05D009754 4.2e-17 92.0 93 43.0
C01p46550 Brassica napus HOM05D007737 ORTHO05D009754 9.5e-17 90.9 102 39.2
Pp3c8_23020 Physcomitrium patens HOM05D007737 ORTHO05D009754 9.5e-17 90.9 93 43.0
AT3G17668 Arabidopsis thaliana HOM05D007737 ORTHO05D009754 1.2e-16 90.5 131 35.1
BcaB04g20827 Brassica carinata HOM05D001802 ORTHO05D001788 1.8e-15 86.7 95 41.1
Aqoxy3G02490 Aquilegia oxysepala HOM05D007737 ORTHO05D009754 7.5e-14 81.3 91 47.3
Cre02.g091193 Chlamydomonas reinhardtii HOM05D007737 ORTHO05D009754 2.4e-12 76.3 73 49.3
EL10Ac1g00699 Beta vulgaris HOM05D007737 ORTHO05D009754 5.9e-11 71.6 56 55.4
PRCOL_00000087 Prasinoderma coloniale HOM05D003082 ORTHO05D003497 1.0e-10 70.9 72 44.4
Peaxi162Scf01343g00168 Petunia axillaris HOM05D007737 ORTHO05D009754 3.8e-10 68.9 95 43.2
HPP92_007269 Vanilla planifolia HOM05D007737 ORTHO05D009754 6.6e-10 68.2 54 53.7


User provided reference genes

Program Settings