Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c20g0500231 Rosa chinensis HOM05D005010 ORTHO05D006065 5.1e-40 167.2 77 100.0
arahy.Tifrunner.gnm1.ann1.99Z3M1 Arachis hypogaea HOM05D005010 ORTHO05D006065 1.4e-18 95.9 56 76.8
arahy.Tifrunner.gnm1.ann1.L7E1K8 Arachis hypogaea HOM05D005010 ORTHO05D006065 1.4e-18 95.9 56 76.8
TWI14G0418 Tripterygium wilfordii HOM05D005010 ORTHO05D006065 1.4e-18 95.9 56 76.8
MD07G1084500 Malus domestica HOM05D005010 ORTHO05D006065 2.5e-18 95.1 56 76.8
Prupe.2G112100 Prunus persica HOM05D005010 ORTHO05D006065 2.5e-18 95.1 56 76.8
RcHm_v2.0_Chr1g0343231 Rosa chinensis HOM05D005010 ORTHO05D006065 2.5e-18 95.1 56 76.8
Cfa003937 Carpinus fangiana HOM05D005010 ORTHO05D006065 3.2e-18 94.7 56 75.0
CiPaw.01G060000 Carya illinoinensis HOM05D005010 ORTHO05D006065 3.2e-18 94.7 56 75.0
Duzib268G0644 Durio zibethinus HOM05D005010 ORTHO05D006065 3.2e-18 94.7 56 75.0
Thhalv10025283m.g Eutrema salsugineum HOM05D005010 ORTHO05D006065 3.2e-18 94.7 56 75.0
Lalb_Chr17g0339751 Lupinus albus HOM05D005010 ORTHO05D006065 3.2e-18 94.7 56 75.0
Manes.05G035400 Manihot esculenta HOM05D005010 ORTHO05D006065 3.2e-18 94.7 56 75.0
Peaxi162Scf00020g00235 Petunia axillaris HOM05D005010 ORTHO05D006065 3.2e-18 94.7 56 75.0
Sabra14G0060200 Salix brachista HOM05D005010 ORTHO05D006065 3.2e-18 94.7 56 75.0
SalBow1G2229 Salvia bowleyana HOM05D005010 ORTHO05D006065 3.2e-18 94.7 56 75.0
CARHR227510 Cardamine hirsuta HOM05D005010 ORTHO05D006065 5.5e-18 94.0 56 75.0
Dinv32470 Davidia involucrata HOM05D005010 ORTHO05D006065 5.5e-18 94.0 56 73.2
GSVIVG01026897001 Vitis vinifera HOM05D005010 ORTHO05D006065 5.5e-18 94.0 56 76.8
Haze_15489 Corylus avellana HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 73.2
ECA234G3587 Erigeron canadensis HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 75.0
Eucgr.D02284 Eucalyptus grandis HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 73.2
FvH4_1g22161 Fragaria vesca HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 75.0
FvH4_7g08470 Fragaria vesca HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 75.0
FAN01G2345 Fragaria x ananassa HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 75.0
FAN06G0276 Fragaria x ananassa HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 75.0
FAN19G0035 Fragaria x ananassa HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 75.0
FAN26G0391 Fragaria x ananassa HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 75.0
QL08p049016 Quercus lobata HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 75.0
Thecc.01G360400 Theobroma cacao HOM05D005010 ORTHO05D006065 7.2e-18 93.6 56 73.2
MSTRG.17259 Avicennia marina HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 73.2
BcaB03g11707 Brassica carinata HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 73.2
BcaC01g00726 Brassica carinata HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 73.2
BraA03t14331Z Brassica rapa HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 73.2
Carub.0007s2048 Capsella rubella HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 73.2
Duzib138G0257 Durio zibethinus HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 73.2
Rhsim07G0016300 Rhododendron simsii HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 71.4
RcHm_v2.0_Chr2g0122991 Rosa chinensis HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 75.0
SalBow6G7245 Salvia bowleyana HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 73.2
Sp7g19030 Schrenkiella parvula HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 73.2
HPP92_014015 Vanilla planifolia HOM05D005010 ORTHO05D006065 9.3e-18 93.2 56 73.2
COL.COLO4_12702 Corchorus olitorius HOM05D005010 ORTHO05D006065 1.2e-17 92.8 56 73.2
Oeu034880.2 Olea europaea HOM05D005010 ORTHO05D006065 1.2e-17 92.8 56 71.4
Psat4g028280 Pisum sativum HOM05D005010 ORTHO05D006065 1.2e-17 92.8 56 73.2
Sopen01g038310 Solanum pennellii HOM05D005010 ORTHO05D006065 1.2e-17 92.8 56 73.2
BolC7t45602H Brassica oleracea HOM05D005010 ORTHO05D006065 1.6e-17 92.4 56 73.2
Migut.B01743 Erythranthe guttata HOM05D005010 ORTHO05D006065 1.6e-17 92.4 56 73.2
FAN03G3376 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.6e-17 92.4 56 73.2
Lsat_1_v5_gn_4_36200 Lactuca sativa HOM05D005010 ORTHO05D006065 1.6e-17 92.4 56 73.2
Lj4g0008215 Lotus japonicus HOM05D005010 ORTHO05D006065 1.6e-17 92.4 56 73.2
Os03g0117200 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 1.6e-17 92.4 56 71.4
PGSC0003DMG400000164 Solanum tuberosum HOM05D005010 ORTHO05D006065 1.6e-17 92.4 56 73.2
TPR.G14634 Trifolium pratense HOM05D005010 ORTHO05D006065 1.6e-17 92.4 56 73.2
Aqoxy7G00336 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 2.1e-17 92.0 56 73.2
AL7G33190 Arabidopsis lyrata HOM05D005010 ORTHO05D006065 2.1e-17 92.0 56 73.2
AT4G20960 Arabidopsis thaliana HOM05D005010 ORTHO05D006065 2.1e-17 92.0 56 73.2
CANSAT21G0157 Cannabis sativa HOM05D005010 ORTHO05D006065 2.1e-17 92.0 56 73.2
Cc02_g37880 Coffea canephora HOM05D005010 ORTHO05D006065 2.1e-17 92.0 56 73.2
Glyma.07G071800 Glycine max HOM05D005010 ORTHO05D006065 2.1e-17 92.0 56 73.2
Sed0013033 Sechium edule HOM05D005010 ORTHO05D006065 2.1e-17 92.0 56 71.4
Atru.chr5.463 Acer truncatum HOM05D005010 ORTHO05D006065 2.7e-17 91.7 56 71.4
C07p51010 Brassica napus HOM05D005010 ORTHO05D006065 2.7e-17 91.7 56 73.2
Potri.002G158800 Populus trichocarpa HOM05D005010 ORTHO05D006065 2.7e-17 91.7 56 73.2
Hund16928 Selenicereus undatus HOM05D005010 ORTHO05D006065 2.7e-17 91.7 56 75.0
BcaC01g00732 Brassica carinata HOM05D005010 ORTHO05D006065 3.6e-17 91.3 56 71.4
BolC3t20645H Brassica oleracea HOM05D005010 ORTHO05D006065 3.6e-17 91.3 56 71.4
BraA08t33517Z Brassica rapa HOM05D005010 ORTHO05D006065 3.6e-17 91.3 56 71.4
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 3.6e-17 91.3 56 73.2
PSO782G1000 Papaver somniferum HOM05D005010 ORTHO05D006065 3.6e-17 91.3 56 73.2
THA.LOC104812937 Tarenaya hassleriana HOM05D005010 ORTHO05D006065 3.6e-17 91.3 56 73.2
Ah.05g180680 Amaranthus hybridus HOM05D005010 ORTHO05D006065 4.6e-17 90.9 56 71.4
BcaNung05416 Brassica carinata HOM05D005010 ORTHO05D006065 4.6e-17 90.9 56 71.4
CAN.G78.54 Capsicum annuum HOM05D005010 ORTHO05D006065 4.6e-17 90.9 56 71.4
Ciclev10020258m.g Citrus clementina HOM05D005010 ORTHO05D006065 4.6e-17 90.9 56 71.4
Glyma.03G010700 Glycine max HOM05D005010 ORTHO05D006065 4.6e-17 90.9 56 71.4
Zm00001eb001180 Zea mays HOM05D005010 ORTHO05D006065 4.6e-17 90.9 56 71.4
Actinidia10021 Actinidia chinensis HOM05D005010 ORTHO05D006065 6.1e-17 90.5 56 71.4
Gorai.004G042100 Gossypium raimondii HOM05D005010 ORTHO05D006065 6.1e-17 90.5 56 71.4
HanXRQChr16g0522801 Helianthus annuus HOM05D005010 ORTHO05D006065 6.1e-17 90.5 56 71.4
PGR031G1307 Punica granatum HOM05D005010 ORTHO05D006065 6.1e-17 90.5 56 73.2
Solyc01g094500.3 Solanum lycopersicum HOM05D005010 ORTHO05D006065 6.1e-17 90.5 56 71.4
Aa31LG6G3020 Aethionema arabicum HOM05D005010 ORTHO05D006065 7.9e-17 90.1 56 71.4
CSS0001208 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 7.9e-17 90.1 56 69.6
CSS0029232 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 7.9e-17 90.1 56 69.6
Cpa.g.c27491.2 Carica papaya HOM05D005010 ORTHO05D006065 7.9e-17 90.1 56 71.4
Gohir.A08G032600 Gossypium hirsutum HOM05D005010 ORTHO05D006065 7.9e-17 90.1 56 71.4
Nitab4.5_0007225g0010 Nicotiana tabacum HOM05D005010 ORTHO05D006065 7.9e-17 90.1 56 69.6
Nitab4.5_0007690g0020 Nicotiana tabacum HOM05D005010 ORTHO05D006065 7.9e-17 90.1 56 69.6
Rhsim11G0072000 Rhododendron simsii HOM05D005010 ORTHO05D006065 7.9e-17 90.1 56 67.9
Sc23g0002970 Simmondsia chinensis HOM05D005010 ORTHO05D006065 7.9e-17 90.1 56 71.4
A08p15390 Brassica napus HOM05D005010 ORTHO05D006065 1.0e-16 89.7 56 69.6
Oeu058611.3 Olea europaea HOM05D005010 ORTHO05D006065 1.0e-16 89.7 56 69.6
SGA_v2.0_scaffold4G02331 Striga asiatica HOM05D005010 ORTHO05D006065 1.0e-16 89.7 56 71.4
TAR629G1525 Trochodendron aralioides HOM05D005010 ORTHO05D006065 1.0e-16 89.7 56 69.6
ATR0680G350 Amborella trichopoda HOM05D005010 ORTHO05D006065 1.3e-16 89.4 56 71.4
AUR62004345 Chenopodium quinoa HOM05D005010 ORTHO05D006065 1.3e-16 89.4 52 75.0
C03p83660 Brassica napus HOM05D005010 ORTHO05D006065 1.8e-16 89.0 56 69.6
AUR62022551 Chenopodium quinoa HOM05D005010 ORTHO05D006065 1.8e-16 89.0 52 73.1
DCAR_006924 Daucus carota HOM05D005010 ORTHO05D006065 1.8e-16 89.0 56 67.9
Nn2g11699 Nelumbo nucifera HOM05D005010 ORTHO05D006065 1.8e-16 89.0 56 69.6
Aqoxy3G02565 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 2.3e-16 88.6 56 71.4
ClCG06G003790 Citrullus lanatus HOM05D005010 ORTHO05D006065 2.3e-16 88.6 56 67.9
FAN03G2591 Fragaria x ananassa HOM05D005010 ORTHO05D006065 2.3e-16 88.6 56 69.6
FAN03G3310 Fragaria x ananassa HOM05D005010 ORTHO05D006065 2.3e-16 88.6 56 69.6
MBI18_g42176_MAGBIO Magnolia biondii HOM05D005010 ORTHO05D006065 2.3e-16 88.6 56 69.6
Medtr4g119220 Medicago truncatula HOM05D005010 ORTHO05D006065 2.3e-16 88.6 56 69.6
CsaV3_6G000480 Cucumis sativus L. HOM05D005010 ORTHO05D006065 3.0e-16 88.2 56 67.9
Ciclev10013015m.g Citrus clementina HOM05D005010 ORTHO05D006065 3.9e-16 87.8 56 67.9
EL10Ac1g00427 Beta vulgaris HOM05D005010 ORTHO05D006065 5.1e-16 87.4 52 73.1
SEGI_16261 Sequoiadendron giganteum HOM05D005010 ORTHO05D006065 5.1e-16 87.4 56 67.9
TAR629G2224 Trochodendron aralioides HOM05D005010 ORTHO05D006065 5.1e-16 87.4 56 67.9
FAN28G0697 Fragaria x ananassa HOM05D005010 ORTHO05D006065 8.7e-16 86.7 56 67.9
VMungo0331G1782 Vigna mungo HOM05D005010 ORTHO05D006065 1.1e-15 86.3 56 67.9
Eucgr.D00187 Eucalyptus grandis HOM05D005010 ORTHO05D006065 1.5e-15 85.9 51 74.5
Mapoly0008s0021 Marchantia polymorpha HOM05D005010 ORTHO05D006065 1.5e-15 85.9 56 66.1
Phvul.010G097500 Phaseolus vulgaris HOM05D005010 ORTHO05D006065 1.5e-15 85.9 56 66.1
unitig_749.g13796 Utricularia gibba HOM05D005010 ORTHO05D006065 1.5e-15 85.9 56 64.3
Os04g0177400 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 2.5e-15 85.1 56 66.1
arahy.Tifrunner.gnm1.ann1.MH5UBF Arachis hypogaea HOM05D005010 ORTHO05D006065 3.3e-15 84.7 74 58.1
Pp3c7_11900 Physcomitrium patens HOM05D005010 ORTHO05D006065 3.3e-15 84.7 56 64.3
arahy.Tifrunner.gnm1.ann1.23H0YW Arachis hypogaea HOM05D005010 ORTHO05D006065 7.4e-15 83.6 70 60.0
MELO3C021216.2 Cucumis melo HOM05D005010 ORTHO05D006065 9.7e-15 83.2 59 64.4
AagrBONN_evm.TU.Sc2ySwM_228.296 Anthoceros agrestis HOM05D005010 ORTHO05D006065 1.6e-14 82.4 56 62.5
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 2.2e-14 82.0 56 66.1
vmacro13278 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 9.1e-13 76.6 92 44.6
Lj9C582G27 Lonicera japonica HOM05D005010 ORTHO05D006065 2.0e-12 75.5 78 52.6
SMO119G0342 Selaginella moellendorffii HOM05D005010 ORTHO05D006065 6.5e-11 70.5 57 54.4
Actinidia20915 Actinidia chinensis HOM05D005010 ORTHO05D006065 1.9e-10 68.9 44 68.2
MCO15G184 Micromonas commoda HOM05D005010 ORTHO05D006065 5.5e-10 67.4 58 53.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 7.2e-10 67.0 52 55.8
PRCOL_00002917 Prasinoderma coloniale HOM05D005010 ORTHO05D006065 1.8e-08 62.4 73 45.2
Potri.014G083000 Populus trichocarpa HOM05D005010 ORTHO05D006065 2.3e-08 62.0 56 60.7
Lalb_Chr04g0256911 Lupinus albus HOM05D005010 ORTHO05D006065 7.4e-07 57.0 36 66.7
MD02G1227800 Malus domestica HOM05D005010 ORTHO05D006065 3.7e-06 54.7 28 82.1


User provided reference genes

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